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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916637
Clone id YMU001_000089_H03
Library
Length 450
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGGCACCCCATAGGAACCACCCATTTCGAGCTTGCTTTGGACCCGAACTTTCCATATCC
ACTCCCTCTTAACTGGGGCATCGATGCTACCAACCCTTCTTTCAAAAAAGTTGGACCTTT
ACAGTCACGTGAACAACACCGCCACATGGGCTCCCATGTTAGCATATGACTGTCCTCTAA
TGGCACCATCAAGTGCCCACTGTGCCACCGAACACATAGAGCACCAGCGCCAACAAGCGG
CGGAACCATGCACGCTCTCGCAGCGCCCGACACCAAGCGGCCATGGCCAACAGCTCACTG
GAGCTTGCACTCTGCCCTTCGATGCCCAATAGAAGTGCCTTTTGCCATATAAATACCCCG
ACGACCCAAGCTAGCCTTTGCATACGAGTTTATGCACCCACCATGTGGCACGCTCTCGAA
ATCCCATCCCTCCTTGTTCAACAAAACACT
■■Homology search results ■■ -
sp_hit_id Q9UPR5
Definition sp|Q9UPR5|NAC2_HUMAN Sodium/calcium exchanger 2 OS=Homo sapiens
Align length 51
Score (bit) 32.7
E-value 0.73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916637|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_H03.
         (450 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UPR5|NAC2_HUMAN Sodium/calcium exchanger 2 OS=Homo sapiens ...    33   0.73 
sp|Q88QV3|PQQF_PSEPK Coenzyme PQQ synthesis protein F OS=Pseudom...    32   0.95 
sp|P01590|IL2RA_MOUSE Interleukin-2 receptor alpha chain OS=Mus ...    32   0.95 
sp|P01864|GCAB_MOUSE Ig gamma-2A chain C region secreted form OS...    32   1.2  
sp|Q1LV22|K1370_DANRE Uncharacterized protein KIAA1370 homolog O...    32   1.6  
sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor ...    30   4.7  
sp|Q7XC54|HOX1_ORYSJ Homeobox-leucine zipper protein HOX1 OS=Ory...    30   4.7  
sp|Q40691|HOX1_ORYSI Homeobox-leucine zipper protein HOX1 OS=Ory...    30   4.7  
sp|A7MB40|K1931_BOVIN Uncharacterized protein KIAA1931 ortholog ...    30   4.8  
sp|A1AZW2|HTPX_PARDP Probable protease htpX homolog OS=Paracoccu...    30   4.8  
sp|Q8NGU9|GP150_HUMAN Probable G-protein coupled receptor 150 OS...    30   6.1  
sp|Q95336|GON2_TUPGB Progonadoliberin-2 OS=Tupaia glis belangeri...    30   6.1  
sp|A8L5A4|RIMM_FRASN Ribosome maturation factor rimM OS=Frankia ...    30   6.3  
sp|P0AA80|GARP_ECOLI Probable galactarate transporter OS=Escheri...    30   6.3  
sp|P0AA81|GARP_ECO57 Probable galactarate transporter OS=Escheri...    30   6.3  

>sp|Q9UPR5|NAC2_HUMAN Sodium/calcium exchanger 2 OS=Homo sapiens
           GN=SLC8A2 PE=2 SV=2
          Length = 921

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = +3

Query: 237 AAEPCTLSQRPTPS------GHGQQLTGACTLPFDAQ*KCLLPYKYPDDPS 371
           AA PC+ +  PTPS            TG C   +  Q   LLP   PDDPS
Sbjct: 14  AAPPCSGAATPTPSLPPPPANDSDTSTGGCQGSYRCQPGVLLPVWEPDDPS 64


>sp|Q88QV3|PQQF_PSEPK Coenzyme PQQ synthesis protein F
           OS=Pseudomonas putida (strain KT2440) GN=pqqF PE=3 SV=1
          Length = 766

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -2

Query: 275 WCRALRERAWFRRLLALVLYVFGG 204
           W  ALRER W RR  A  LY F G
Sbjct: 266 WLGALRERGWLRRFTAERLYAFAG 289


>sp|P01590|IL2RA_MOUSE Interleukin-2 receptor alpha chain OS=Mus
           musculus GN=Il2ra PE=2 SV=1
          Length = 268

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 207 TEHIEHQRQQAAEPCTLSQRPTPSGHGQQLTGACTLP 317
           T  +EHQ++Q  +  T  Q+PT S H + LTG C  P
Sbjct: 90  TAQLEHQKEQ--QTTTDMQKPTQSMHQENLTGHCREP 124


>sp|P01864|GCAB_MOUSE Ig gamma-2A chain C region secreted form
           OS=Mus musculus PE=1 SV=1
          Length = 335

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
 Frame = +3

Query: 42  TRTFHIHSLLTGASMLPTLLSKKL-DLYSHVNNTATWAPMLAYDCPLMAPSSAHCATEHI 218
           T T++  SL +G    P LL   L  L S V  T+   P     C +  P+S+    + I
Sbjct: 38  TLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKI 97

Query: 219 EHQRQQAAEPCTLSQRPTPSGHGQQLTGACTLPFDAQ*KCLL 344
           E +      PC   QR  P      L G     F  + K +L
Sbjct: 98  EPRVPITQNPCPPHQRVPPCAAPDLLGGPSVFIFPPKIKDVL 139


>sp|Q1LV22|K1370_DANRE Uncharacterized protein KIAA1370 homolog
           OS=Danio rerio GN=si:dkey-266j9.3 PE=4 SV=1
          Length = 1021

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = +3

Query: 24  ISSLLWTRTFHIHSLLTGASMLPTLLSKKLDLYSHVNNTATWAPMLAYDCPLMAPSSAHC 203
           IS L+  R  H +SLL G   L T  ++++   +H   T  +  + ++  P  AP+    
Sbjct: 532 ISRLIQERLQHSYSLLNGTYKLKTSQNEQVGS-NHGAQTNGFVSLSSHKKPTNAPNGEES 590

Query: 204 ATEHIEHQRQQAAEPCTLSQRP 269
              HI H  +    P +  ++P
Sbjct: 591 TDPHISHATKCCRSPDSSRRKP 612


>sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor 1
           OS=Homo sapiens GN=PEAR1 PE=1 SV=1
          Length = 1037

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +2

Query: 191 KCPLCHRTHRAPAPTSGGTMHALAA---PDTKRPWPTAHWSLHSALRC 325
           +C  C   + +    S GT + LA    PD  +P P  HW  + A  C
Sbjct: 618 RCVPCKCANHSFCHPSNGTCYCLAGWTGPDCSQPCPPGHWGENCAQTC 665


>sp|Q7XC54|HOX1_ORYSJ Homeobox-leucine zipper protein HOX1 OS=Oryza
           sativa subsp. japonica GN=HOX1 PE=1 SV=1
          Length = 311

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 194 CPLCHRTHRAPAPTSGGTMHALAAPDTKRPWPTA 295
           CP C R   A   T   +  A A P   RPWP A
Sbjct: 271 CPSCERVASAATTTRNNSGAAPARPVPTRPWPPA 304


>sp|Q40691|HOX1_ORYSI Homeobox-leucine zipper protein HOX1 OS=Oryza
           sativa subsp. indica GN=HOX1 PE=1 SV=2
          Length = 311

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 194 CPLCHRTHRAPAPTSGGTMHALAAPDTKRPWPTA 295
           CP C R   A   T   +  A A P   RPWP A
Sbjct: 271 CPSCERVASAATTTRNNSGAAPARPVPTRPWPPA 304


>sp|A7MB40|K1931_BOVIN Uncharacterized protein KIAA1931 ortholog
           OS=Bos taurus PE=2 SV=1
          Length = 823

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 19/59 (32%), Positives = 20/59 (33%)
 Frame = -1

Query: 249 MVPPLVGAGALCVRWHSGHLMVPLEDSHMLTWEPMWRCCSRDCKGPTFLKEGLVASMPQ 73
           M PP  G    C    SGH   PL         P        CKG  F   GL   +PQ
Sbjct: 321 MPPPFSGCSHPCSGHCSGHCSGPLLPPPSSQQLPSTHSRDPGCKGHKFTHSGLTCQLPQ 379


>sp|A1AZW2|HTPX_PARDP Probable protease htpX homolog OS=Paracoccus
           denitrificans (strain Pd 1222) GN=htpX PE=3 SV=1
          Length = 292

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 291 VGHGRLVSGAARACMVPPLVGAGALCVRWHSGHLMVPLEDSHMLT 157
           +G G L+ G   A +   + GAG L   W+S  +++  + +H++T
Sbjct: 19  MGMGGLIGGRGGAVIALAIAGAGNLFAWWNSDKMVLRQQGAHLVT 63
tr_hit_id Q3BSV7
Definition tr|Q3BSV7|Q3BSV7_XANC5 Putative secreted protein OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
Align length 40
Score (bit) 37.0
E-value 0.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916637|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_H03.
         (450 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3BSV7|Q3BSV7_XANC5 Putative secreted protein OS=Xanthomonas ...    37   0.50 
tr|B4FPI0|B4FPI0_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.85 
tr|Q4SNA3|Q4SNA3_TETNG Chromosome 8 SCAF14543, whole genome shot...    35   2.5  
tr|Q4S9N4|Q4S9N4_TETNG Chromosome undetermined SCAF14696, whole ...    33   7.2  
tr|B4J5L6|B4J5L6_DROGR GH20831 OS=Drosophila grimshawi GN=GH2083...    33   7.2  
tr|A1DL02|A1DL02_NEOFI C2H2 finger domain protein, putative OS=N...    33   7.2  
tr|Q98290|Q98290_MCV1 MC123R OS=Molluscum contagiosum virus subt...    33   9.3  
tr|Q1V5A2|Q1V5A2_VIBAL Putative multicopper oxidase OS=Vibrio al...    33   9.4  
tr|A7Q5P6|A7Q5P6_VITVI Chromosome undetermined scaffold_53, whol...    33   9.4  
tr|B4DYQ9|B4DYQ9_HUMAN cDNA FLJ54485, highly similar to Sodium/c...    33   9.4  

>tr|Q3BSV7|Q3BSV7_XANC5 Putative secreted protein OS=Xanthomonas
           campestris pv. vesicatoria (strain 85-10) GN=XCV2425
           PE=3 SV=1
          Length = 605

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +3

Query: 186 PSSAHCATEHIEHQRQQAAEPCTLSQRPTPSGHGQQLTGA 305
           P  AH AT H   Q  Q   P TL+  P+PS H   LT A
Sbjct: 390 PDYAHLATPHFNAQMLQPGRPVTLNASPSPSPHAAPLTTA 429


>tr|B4FPI0|B4FPI0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 221

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
 Frame = +3

Query: 117 LYSHVNNTATWAPMLAYDCPLMAPSS---AHCATEHIEHQRQQAAEPCT----LSQRPTP 275
           L S V+NT TW  +L+  CPL    +    H A  H+EH+    A   T    L   PT 
Sbjct: 25  LVSFVDNTRTWERLLSRACPLCTTENMDELHAAAHHVEHEDGSEAIKATKFENLGSHPTL 84

Query: 276 SGHGQQLTG 302
                Q+ G
Sbjct: 85  KPDIDQMEG 93


>tr|Q4SNA3|Q4SNA3_TETNG Chromosome 8 SCAF14543, whole genome shotgun
            sequence OS=Tetraodon nigroviridis GN=GSTENG00015376001
            PE=4 SV=1
          Length = 1604

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
 Frame = +2

Query: 116  PLQSREQHRHMGSHVSI*LSSNGTIKCPL-CHRTHRAPAPTSGGTMHALAAPDTKRPWPT 292
            P+QS   H H G H       +G +  P   H +  AP   S    H+  +  T  P PT
Sbjct: 897  PIQSTTTHTHSGPH-------SGPVPAPTPAHVSPAAPLSCSSPPRHSPLSSCTPSPSPT 949

Query: 293  AHWSLHSALRCPIEVPFAI*IPRRPKLA--FAYEFMHPPCGT--LSKSHPSLFNKT 448
                       PI  P     P+R  +A   +     PPC T   + +HP LF+ T
Sbjct: 950  R--------LSPIPAPSQPPCPKRIPMAAPCSSSSSPPPCSTPPSAGTHPLLFSST 997


>tr|Q4S9N4|Q4S9N4_TETNG Chromosome undetermined SCAF14696, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00021804001 PE=4 SV=1
          Length = 939

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
 Frame = +2

Query: 173 SSNGTIKCPLCHRTHRAPAPTSGGTMHALAAPDTKRPWPTAHW--SLHSALRCPIEVPFA 346
           SS   +K P C       +P+   +  A A P  + P PTA W  SL +  RC      A
Sbjct: 299 SSPPPVKRPYCSVNIHYKSPSPPASPSAAATPCARSPPPTARWSSSLRTTRRCGAPGAAA 358

Query: 347 I*IPRRPKLAFAYEFMHPPCG 409
             +P   +   A    H  CG
Sbjct: 359 RAVPAGARAHAAGRRHHAACG 379


>tr|B4J5L6|B4J5L6_DROGR GH20831 OS=Drosophila grimshawi GN=GH20831
           PE=4 SV=1
          Length = 665

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
 Frame = +2

Query: 59  PLPLNWGIDATNPSFKKVGPLQSREQH---RH-MGSHVSI*LSSNGTIKCPLCHRTHR-- 220
           PL  + G+D        + P   R      RH M S  +  +SS+    C LC  +HR  
Sbjct: 273 PLSSSSGLDKRGMGSGHILPRSKRPPSPPPRHSMRSRSNSSMSSSSDDSCSLCSPSHRHR 332

Query: 221 -------APAPTSGGTMHALAAPDTKRPWPTAHWSLHSALRCP 328
                  +P P   G    + AP +  P P +H  LH     P
Sbjct: 333 SRSRGPRSPPPKPRGHYRGVGAPSSLAPPPDSHGRLHGRPTTP 375


>tr|A1DL02|A1DL02_NEOFI C2H2 finger domain protein, putative
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=NFIA_048100 PE=4 SV=1
          Length = 498

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +2

Query: 44  PNFPYPLPLNWGIDATNPSFKKVGPLQSREQHRHMGSHVSI*LSSNGTIKCPLCHRTHRA 223
           P+F  P P N+ I+   P +    PLQS   + H  +H S+    N  +  P   +    
Sbjct: 101 PSFELPPP-NFQINVGTPKY----PLQS---NAHPPAHPSV----NSLLTPPASTQAGEV 148

Query: 224 PAPTSGG-TMHALAAPDTKRPWPTAHWSLHS 313
            AP+S   T    A PD    + TA+W  HS
Sbjct: 149 TAPSSAAPTTTVSATPDVAPSYGTAYWQGHS 179


>tr|Q98290|Q98290_MCV1 MC123R OS=Molluscum contagiosum virus subtype
           1 GN=MC123R PE=4 SV=1
          Length = 694

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = -1

Query: 360 RGIYMAKGTSIGHRRAECKLQ*AVG------HGRLVSGAARACMVPPLVGAG 223
           RG     G  + H   EC+ + A G       GRL+ G  R  + PPL+G+G
Sbjct: 635 RGHAQRAGLQLAHIGEECEARLAHGARGARVRGRLLHGGTRLALAPPLLGSG 686


>tr|Q1V5A2|Q1V5A2_VIBAL Putative multicopper oxidase OS=Vibrio
           alginolyticus 12G01 GN=V12G01_09988 PE=4 SV=1
          Length = 460

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +2

Query: 290 TAHWSLHSALRCPIE---VPFAI*IPRRPKLAFAYEFMHPPCGT 412
           T HW     LR PIE   VPF   +P  P   F YEF  P  GT
Sbjct: 90  TIHWH---GLRIPIEMDGVPFLSQLPIMPGETFVYEFTPPDAGT 130


>tr|A7Q5P6|A7Q5P6_VITVI Chromosome undetermined scaffold_53, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00031037001 PE=4 SV=1
          Length = 599

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 135 NTATWAPMLAYDCPLMAPSSAHCATEHIEHQRQQAAEPCTLSQRPTPSGHGQQLTGA 305
           +++T +P+ ++   + +P      TEH+EH+ Q +     +     PS HGQQ T A
Sbjct: 109 SSSTNSPVKSFPLSVDSPKHFEIKTEHVEHEDQSSTPAYGIMNH--PSSHGQQNTCA 163


>tr|B4DYQ9|B4DYQ9_HUMAN cDNA FLJ54485, highly similar to
           Sodium/calcium exchanger 2 (Solute carrier family 8
           (Sodium-calcium exchanger), member 2, isoform CRA_b)
           OS=Homo sapiens GN=SLC8A2 PE=2 SV=1
          Length = 921

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = +3

Query: 237 AAEPCTLSQRPTPS------GHGQQLTGACTLPFDAQ*KCLLPYKYPDDPS 371
           AA PC+ +  PTPS            TG C   +  Q   LLP   PDDPS
Sbjct: 14  AAPPCSGAATPTPSLPPPPANDSDTSTGGCQGSYRCQPGVLLPVWEPDDPS 64