BP916639
Clone id YMU001_000089_H06
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000089_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTGTTGCAATAGCCTTTTCACATAAATTCAATCTGAAAGAGAAATGAAATACAAACAG
GATAATAGAAACCAAAGAAGCTTCCCATGCCTCGCAACAAATTCCATGGGGGCGAGGTAC
GGCATGAGGTTTTCCTACATGTTTCGTAAACAGACCATCTATCATCCACCATCTGTTCTT
GGCGCATACACTCTCATGCTCTCACTCTGATCCCCTTCATGCAACAAGCCCCTCTCTTTT
CGTCCTGGTGTAGCATAGTGGTGCAACACATCGTGGTGATGGACAACCATGGATGGTTGC
TCTTCAACCAAATCTACTAGAACGTGCCCTGCTTAATAGAATCTTCGTTCGCCTCTCCAA
GTGCAGCTTCATTGAGGTACTTCTCAGCCAATTGCACCCTTTTCACGTTCTCTTGCTCCT
TCACCAACATAAACCCATACTCAAGAAGTTTGTCGACGGTCATGGTTGGCTTCGTGAATG
TCGGGGGTCCCTCCCTA
■■Homology search results ■■ -
sp_hit_id Q7X999
Definition sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata
Align length 59
Score (bit) 97.8
E-value 2.0e-20
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916639|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_H06.
(497 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase... 98 2e-20
sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase ... 97 3e-20
sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase ... 97 5e-20
sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase ... 96 1e-19
sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase... 96 1e-19
sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase... 94 3e-19
sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase ... 94 5e-19
sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase ... 93 8e-19
sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase... 91 3e-18
sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase... 89 9e-18
sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase ... 88 2e-17
sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase ... 88 2e-17
sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase... 87 4e-17
sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase ... 86 9e-17
sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase ... 57 4e-08
sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase ... 44 4e-04
sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase ... 39 0.017
sp|P58555|RCA_ANASP Ribulose bisphosphate carboxylase/oxygenase ... 35 0.19
sp|P51533|PDR10_YEAST ATP-dependent permease PDR10 OS=Saccharomy... 32 2.1
sp|P84562|RCA_POPEU Ribulose bisphosphate carboxylase/oxygenase ... 31 3.6

>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase
activase 2, chloroplastic OS=Larrea tridentata GN=RCA2
PE=2 SV=1
Length = 435

Score = 97.8 bits (242), Expect = 2e-20
Identities = 44/59 (74%), Positives = 56/59 (94%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPPTF +P MT+DKLL+YG MLV+EQENVKRVQLA+KY++EAALG+AN+D+IK+GTF
Sbjct: 377 KEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435


>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433

Score = 97.4 bits (241), Expect = 3e-20
Identities = 45/59 (76%), Positives = 54/59 (91%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPPTF +P +T++KLLEYG MLV EQENVKRVQLA+KYLNEAALGEANED++K G+F
Sbjct: 373 KEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSF 431


>sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2
SV=2
Length = 439

Score = 96.7 bits (239), Expect = 5e-20
Identities = 45/59 (76%), Positives = 54/59 (91%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPPTF +P M++DKLL+YG MLV+EQENVKRVQLA+KYLNEAALG ANED+IK G+F
Sbjct: 379 KEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSF 437


>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Oryza sativa subsp. japonica
GN=RCA PE=1 SV=2
Length = 466

Score = 95.5 bits (236), Expect = 1e-19
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
REGPP F +P MT++KL+EYG+MLVKEQENVKRVQLAE+YL+EAALG+AN D++K G+F
Sbjct: 368 REGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSF 426


>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase
activase B, chloroplastic OS=Hordeum vulgare GN=RCAB
PE=2 SV=1
Length = 425

Score = 95.5 bits (236), Expect = 1e-19
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
REGPPTF +P MT++KL+EYG MLV+EQENVKRVQLA+KYL+EAALG+AN+D++K G F
Sbjct: 364 REGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAF 422


>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase
activase 1, chloroplastic OS=Larrea tridentata GN=RCA1
PE=2 SV=1
Length = 476

Score = 94.0 bits (232), Expect = 3e-19
Identities = 43/59 (72%), Positives = 54/59 (91%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPP+F +P MT+DKLL YG MLV+EQENVKRVQLA+KY++EAALG+AN D+IK+GTF
Sbjct: 377 KEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTF 435


>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Malus domestica GN=RCA PE=2
SV=1
Length = 437

Score = 93.6 bits (231), Expect = 5e-19
Identities = 43/59 (72%), Positives = 53/59 (89%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPPTF +P MT++KLLEYG MLV+EQENVKRVQLA+KYL+EAALG+AN D++ GTF
Sbjct: 377 KEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTF 435


>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase
activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1
PE=2 SV=1
Length = 441

Score = 92.8 bits (229), Expect = 8e-19
Identities = 44/59 (74%), Positives = 52/59 (88%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPPTF +P MT+DKLL Y MLV+EQENVKRVQLA++YLNEAALG ANED+IK G+F
Sbjct: 381 KEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSF 439


>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase
activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
Length = 442

Score = 90.9 bits (224), Expect = 3e-18
Identities = 42/58 (72%), Positives = 51/58 (87%)
Frame = -2

Query: 493 EGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+GPPTF +P MT++KLLEYG MLV+EQENVKRVQLA+KYL EAALG+AN D+I G+F
Sbjct: 382 DGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSF 439


>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase
activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA
PE=2 SV=1
Length = 439

Score = 89.4 bits (220), Expect = 9e-18
Identities = 43/58 (74%), Positives = 49/58 (84%)
Frame = -2

Query: 493 EGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+GPPTF +P MTV+KLLEYG MLV+EQENVKRVQLAE YL EAALG+AN D+I G F
Sbjct: 382 DGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439


tr_hit_id Q9AXG0
Definition tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium hirsutum
Align length 59
Score (bit) 100.0
E-value 5.0e-20
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916639|Adiantum capillus-veneris mRNA, clone:
YMU001_000089_H06.
(497 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy... 100 5e-20
tr|A7PNR4|A7PNR4_VITVI Chromosome chr8 scaffold_23, whole genome... 100 7e-20
tr|A9NX94|A9NX94_PICSI Putative uncharacterized protein OS=Picea... 99 8e-20
tr|A9NV87|A9NV87_PICSI Putative uncharacterized protein OS=Picea... 99 8e-20
tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate car... 99 8e-20
tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy... 99 1e-19
tr|A9PGU7|A9PGU7_POPTR Putative uncharacterized protein OS=Popul... 98 2e-19
tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Popul... 98 2e-19
tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Popul... 98 2e-19
tr|A9NXN4|A9NXN4_PICSI Putative uncharacterized protein OS=Picea... 98 2e-19
tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate carboxylase/oxy... 97 3e-19
tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygena... 97 3e-19
tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genom... 97 3e-19
tr|Q19RP2|Q19RP2_9MAGN Ribulose-1,5-bisphosphate carboxylase/oxy... 97 4e-19
tr|A9PJ06|A9PJ06_POPJC Putative uncharacterized protein OS=Popul... 97 4e-19
tr|Q9AXG1|Q9AXG1_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy... 97 6e-19
tr|Q9ATC2|Q9ATC2_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 96 7e-19
tr|Q9ATC1|Q9ATC1_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 96 7e-19
tr|Q9ATC0|Q9ATC0_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 96 7e-19
tr|Q9ATB9|Q9ATB9_ZANAE Rubisco activase (Fragment) OS=Zantedesch... 96 7e-19
tr|Q06B51|Q06B51_ACERU Chloroplast ribulose-1,5-bisphosphate car... 96 7e-19
tr|Q06B50|Q06B50_ACERU Chloroplast ribulose-1,5-bisphosphate car... 96 7e-19
tr|Q06B49|Q06B49_ACERU Chloroplast ribulose-1,5-bisphosphate car... 96 7e-19
tr|Q06B48|Q06B48_ACERU Chloroplast ribulose-1,5-bisphosphate car... 96 7e-19
tr|Q9AT38|Q9AT38_ORYSA Ribulose-1,5-bisphosphate carboxylase act... 96 1e-18
tr|B8BIM0|B8BIM0_ORYSI Putative uncharacterized protein OS=Oryza... 96 1e-18
tr|B7EAB2|B7EAB2_ORYSJ cDNA clone:J013001C24, full insert sequen... 96 1e-18
tr|A7NYV5|A7NYV5_VITVI Chromosome chr6 scaffold_3, whole genome ... 96 1e-18
tr|A6N1P5|A6N1P5_ORYSI Ribulose bisphosphate carboxylase/oxygena... 96 1e-18
tr|A5C3D4|A5C3D4_VITVI Putative uncharacterized protein OS=Vitis... 96 1e-18

>tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate
carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium
hirsutum PE=2 SV=1
Length = 435

Score = 100 bits (248), Expect = 5e-20
Identities = 48/59 (81%), Positives = 54/59 (91%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
REGPPTF +P MT++KLLEYG MLV EQENVKRVQLA+KYL+EAALGEANEDSI +GTF
Sbjct: 338 REGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTF 396


>tr|A7PNR4|A7PNR4_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021361001
PE=4 SV=1
Length = 474

Score = 99.8 bits (247), Expect = 7e-20
Identities = 47/59 (79%), Positives = 55/59 (93%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPPTF KP MT+DKLLEYG MLV+EQENVKRVQLA+KYL+EAALG+ANED+IK G+F
Sbjct: 377 KEGPPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKSGSF 435


>tr|A9NX94|A9NX94_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 440

Score = 99.4 bits (246), Expect = 8e-20
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPPTF KP MT++KLLEYG MLV EQ+NVKRVQLA+KY++EAALG+ANEDSIK+GTF
Sbjct: 380 KEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYMSEAALGDANEDSIKRGTF 438


>tr|A9NV87|A9NV87_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 480

Score = 99.4 bits (246), Expect = 8e-20
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPPTF KP MT++KLLEYG MLV EQ+NVKRVQLA+KY++EAALG+ANEDSIK+GTF
Sbjct: 380 KEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYMSEAALGDANEDSIKRGTF 438


>tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate
carboxylase/oxygenase activase (Fragment) OS=Morus alba
var. multicaulis PE=2 SV=1
Length = 246

Score = 99.4 bits (246), Expect = 8e-20
Identities = 47/59 (79%), Positives = 55/59 (93%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPPTF +P MTV+KLLEYG MLV+EQENVKRVQLA+KYL+EAALG+AN+DSIK GTF
Sbjct: 151 KEGPPTFDQPKMTVEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANQDSIKSGTF 209


>tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate
carboxylase/oxygenase activase alpha 2 OS=Gossypium
hirsutum PE=2 SV=1
Length = 421

Score = 99.0 bits (245), Expect = 1e-19
Identities = 47/59 (79%), Positives = 54/59 (91%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
R+GPPTF +P MT++KLLEYG MLV EQENVKRVQLA+KYL+EAALGEANEDSI +GTF
Sbjct: 324 RDGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTF 382


>tr|A9PGU7|A9PGU7_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 476

Score = 98.2 bits (243), Expect = 2e-19
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
REGPPTF +P MT++KLLEYG MLV+EQENVKRVQLA+KYL+EA+LGEAN+DSI +GTF
Sbjct: 379 REGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEASLGEANQDSIDRGTF 437


>tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 361

Score = 98.2 bits (243), Expect = 2e-19
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
REGPPTF +P MTV+KL EYG MLVKEQENVKRVQLA+KYL++AALGEAN+D+I++GTF
Sbjct: 301 REGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSDAALGEANQDAIERGTF 359


>tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 475

Score = 98.2 bits (243), Expect = 2e-19
Identities = 46/59 (77%), Positives = 55/59 (93%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
REGPPTF +P MTV+KL EYG MLVKEQENVKRVQLA+KYL++AALGEAN+D+I++GTF
Sbjct: 380 REGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSDAALGEANQDAIERGTF 438


>tr|A9NXN4|A9NXN4_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 310

Score = 98.2 bits (243), Expect = 2e-19
Identities = 45/59 (76%), Positives = 55/59 (93%)
Frame = -2

Query: 496 REGPPTFTKPTMTVDKLLEYGFMLVKEQENVKRVQLAEKYLNEAALGEANEDSIKQGTF 320
+EGPPTF KP MT++KLLEYG MLV EQ+NVKR+QLA+KY++EAALG+ANEDSIK+GTF
Sbjct: 250 KEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRLQLADKYMSEAALGDANEDSIKRGTF 308