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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916646
Clone id YMU001_000090_A02
Library
Length 247
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGTGGTGAATCGGAGCTTTTGGTCTTGTCCCGGATTACCAACAGCCAATTATTGTGTAC
ATTCCTGAACATGAGACAAAAGGGTTTAGCGGTTCGTGGAGGTCTGGCTTTGTGCCAATT
GCACAATATGGGTCAGAGTTTGTGACAGCCTCCAAGGAGGTGGCTTGCAAGCCTGTGAGA
CTACTTTTTAGTGGCAGCAATCACTATGACTTATTGATTTAACCTGCATGATCTCCTCAT
GAGCCTC
■■Homology search results ■■ -
sp_hit_id Q9FQ20
Definition sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana
Align length 40
Score (bit) 32.0
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916646|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_A02.
         (247 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=A...    32   0.98 
sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 OS=Homo s...    29   8.3  

>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2
           OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2
          Length = 810

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 64  PEHETKGFSGSWRSGFVPIAQYGSEFVTASKEVACKPVRL 183
           PE  TK F+  +RS   P+ QYGS  +   + + C+P++L
Sbjct: 500 PERRTKRFANPFRSFLEPLIQYGSSDL---QSLFCQPIKL 536


>sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 OS=Homo
           sapiens GN=CD6 PE=1 SV=2
          Length = 668

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 21  WSCPGLPTANYCVH 62
           W CPGLP  +YC H
Sbjct: 238 WDCPGLPGQHYCGH 251
tr_hit_id A9NQ98
Definition tr|A9NQ98|A9NQ98_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 60
Score (bit) 78.6
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916646|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_A02.
         (247 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NQ98|A9NQ98_PICSI Putative uncharacterized protein OS=Picea...    79   1e-13
tr|A7PNZ9|A7PNZ9_VITVI Chromosome chr8 scaffold_23, whole genome...    71   1e-12
tr|A9TDC9|A9TDC9_PHYPA Predicted protein (Fragment) OS=Physcomit...    74   5e-12
tr|Q10NL4|Q10NL4_ORYSJ Os03g0266000 protein OS=Oryza sativa subs...    65   6e-11
tr|B8AKN1|B8AKN1_ORYSI Putative uncharacterized protein OS=Oryza...    65   6e-11
tr|Q10NL2|Q10NL2_ORYSJ OTU-like cysteine protease family protein...    65   6e-11
tr|B4FU62|B4FU62_MAIZE Putative uncharacterized protein OS=Zea m...    65   1e-10
tr|Q8GYW0|Q8GYW0_ARATH Putative auxin-regulated protein (At2g380...    62   6e-10
tr|Q84J40|Q84J40_ORYSJ Putative uncharacterized protein OJ1012B0...    42   3e-04
tr|A9SFY8|A9SFY8_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.21 
tr|B8LMJ1|B8LMJ1_PICSI Putative uncharacterized protein OS=Picea...    36   1.1  
tr|A9S6N6|A9S6N6_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   1.5  
tr|A9S8P6|A9S8P6_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   1.9  
tr|Q9M2R6|Q9M2R6_ARATH Putative uncharacterized protein T10K17.2...    35   2.5  
tr|Q8LBZ4|Q8LBZ4_ARATH Putative uncharacterized protein (At3g578...    35   2.5  
tr|Q682S6|Q682S6_ARATH Putative uncharacterized protein At3g5781...    35   2.5  
tr|A5AJL3|A5AJL3_VITVI Putative uncharacterized protein OS=Vitis...    33   5.5  
tr|Q00TE7|Q00TE7_OSTTA OTU (Ovarian tumor)-like cysteine proteas...    33   9.4  
tr|B4FF42|B4FF42_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.4  
tr|A9U337|A9U337_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   9.4  

>tr|A9NQ98|A9NQ98_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 239

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 40/60 (66%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
 Frame = +1

Query: 43  QPIIVYIPEHETKGFSGSWRSGFVPIAQYGSEFVTASKE-VACKPVRLLFSGSNHYDLLI 219
           QPIIVYIPE E K   G W +GF+PIA+YG EF+  SK+    KPVRLL+SGSNHYDLLI
Sbjct: 181 QPIIVYIPESEAKQ-GGKWGTGFIPIAEYGEEFMKPSKQRKGRKPVRLLYSGSNHYDLLI 239


>tr|A7PNZ9|A7PNZ9_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021456001
           PE=4 SV=1
          Length = 249

 Score = 70.9 bits (172), Expect(2) = 1e-12
 Identities = 39/62 (62%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
 Frame = +1

Query: 43  QPIIVYIPEHETKGFSGSWRSGFVPIAQYGSEFVTASKEVACKP---VRLLFSGSNHYDL 213
           QPIIVYIPEHE     G W  GF+PIA+YGSEF  +S+    KP   VRLL+SG NHYDL
Sbjct: 192 QPIIVYIPEHEHT--RGGWSPGFIPIAEYGSEFGKSSRN--GKPRGVVRLLYSGKNHYDL 247

Query: 214 LI 219
           LI
Sbjct: 248 LI 249



 Score = 25.0 bits (53), Expect(2) = 1e-12
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 2   GGESELLVLSRITNSQLL 55
           GGESELLVLS++ +  ++
Sbjct: 178 GGESELLVLSKLCHQPII 195


>tr|A9TDC9|A9TDC9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_143822 PE=4 SV=1
          Length = 167

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 36/60 (60%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
 Frame = +1

Query: 43  QPIIVYIPEHETKGFSGSWRSGFVPIAQYGSEFVTASKE-VACKPVRLLFSGSNHYDLLI 219
           QP+IVYIPE E K  +  W +G++PIA+YGSE+    K+  A KPVRLL++GSNHYDLLI
Sbjct: 109 QPVIVYIPESEAKQ-AARWGTGYIPIAEYGSEYTKPGKDRKARKPVRLLYNGSNHYDLLI 167


>tr|Q10NL4|Q10NL4_ORYSJ Os03g0266000 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0266000 PE=2 SV=1
          Length = 224

 Score = 65.5 bits (158), Expect(2) = 6e-11
 Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = +1

Query: 40  QQPIIVYIPEHETKGFSGSWRSGFVPIAQYGSEFVTASKEVACK-PVRLLFSGSNHYDLL 216
           +QPII+YIPE E  G      +GF+PIA+YG EF   SK+   K PVRLL+SG NHYDLL
Sbjct: 168 RQPIIIYIPEREYHGRG----NGFIPIAEYGLEFSKDSKQWKKKVPVRLLYSGRNHYDLL 223

Query: 217 I 219
           +
Sbjct: 224 V 224



 Score = 24.6 bits (52), Expect(2) = 6e-11
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   GGESELLVLSRITNSQLL 55
           GGESELLVLS++    ++
Sbjct: 155 GGESELLVLSKLCRQPII 172


>tr|B8AKN1|B8AKN1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10875 PE=4 SV=1
          Length = 224

 Score = 65.5 bits (158), Expect(2) = 6e-11
 Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = +1

Query: 40  QQPIIVYIPEHETKGFSGSWRSGFVPIAQYGSEFVTASKEVACK-PVRLLFSGSNHYDLL 216
           +QPII+YIPE E  G      +GF+PIA+YG EF   SK+   K PVRLL+SG NHYDLL
Sbjct: 168 RQPIIIYIPEREYHGRG----NGFIPIAEYGLEFSKDSKQWKKKVPVRLLYSGRNHYDLL 223

Query: 217 I 219
           +
Sbjct: 224 V 224



 Score = 24.6 bits (52), Expect(2) = 6e-11
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   GGESELLVLSRITNSQLL 55
           GGESELLVLS++    ++
Sbjct: 155 GGESELLVLSKLCRQPII 172


>tr|Q10NL2|Q10NL2_ORYSJ OTU-like cysteine protease family protein,
           expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g15930 PE=4 SV=1
          Length = 217

 Score = 65.5 bits (158), Expect(2) = 6e-11
 Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = +1

Query: 40  QQPIIVYIPEHETKGFSGSWRSGFVPIAQYGSEFVTASKEVACK-PVRLLFSGSNHYDLL 216
           +QPII+YIPE E  G      +GF+PIA+YG EF   SK+   K PVRLL+SG NHYDLL
Sbjct: 161 RQPIIIYIPEREYHGRG----NGFIPIAEYGLEFSKDSKQWKKKVPVRLLYSGRNHYDLL 216

Query: 217 I 219
           +
Sbjct: 217 V 217



 Score = 24.6 bits (52), Expect(2) = 6e-11
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   GGESELLVLSRITNSQLL 55
           GGESELLVLS++    ++
Sbjct: 148 GGESELLVLSKLCRQPII 165


>tr|B4FU62|B4FU62_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 221

 Score = 65.1 bits (157), Expect(2) = 1e-10
 Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = +1

Query: 40  QQPIIVYIPEHETKGFSGSWRSGFVPIAQYGSEFVTASKEVACK-PVRLLFSGSNHYDLL 216
           +QPII+YIPE E  G      +GF+PIA+YG EF   +K+   K PVRLL+SG NHYDLL
Sbjct: 165 RQPIIIYIPEREYHGRG----NGFIPIAEYGLEFTKNTKQWKKKTPVRLLYSGRNHYDLL 220

Query: 217 I 219
           +
Sbjct: 221 V 221



 Score = 24.3 bits (51), Expect(2) = 1e-10
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 2   GGESELLVLSRITNSQLL 55
           GGESE LVLSR+    ++
Sbjct: 152 GGESEFLVLSRLCRQPII 169


>tr|Q8GYW0|Q8GYW0_ARATH Putative auxin-regulated protein (At2g38025)
           OS=Arabidopsis thaliana GN=At2g38025 PE=2 SV=1
          Length = 234

 Score = 62.0 bits (149), Expect(2) = 6e-10
 Identities = 34/61 (55%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
 Frame = +1

Query: 40  QQPIIVYIPEHETKGFSGSWRSGFVPIAQYGSEFVTA--SKEVACKPVRLLFSGSNHYDL 213
           +QPIIVYIPEHE  G  G +  GF+PI +YGSEF       +     VRLL+SG NHYDL
Sbjct: 174 KQPIIVYIPEHE-HGRGGGYGPGFIPIQEYGSEFRGGWGKGKTNKNVVRLLYSGRNHYDL 232

Query: 214 L 216
           L
Sbjct: 233 L 233



 Score = 24.6 bits (52), Expect(2) = 6e-10
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   GGESELLVLSRITNSQLL 55
           GGESELLVLS++    ++
Sbjct: 161 GGESELLVLSKLCKQPII 178


>tr|Q84J40|Q84J40_ORYSJ Putative uncharacterized protein
           OJ1012B02.19 (Putative uncharacterized protein)
           (Putative uncharacterized protein OJ1364E02.3) OS=Oryza
           sativa subsp. japonica GN=OJ1012B02.19 PE=4 SV=1
          Length = 231

 Score = 42.4 bits (98), Expect(2) = 3e-04
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = +1

Query: 40  QQPIIVYIPEHETKGFSGSWRSGFVPIAQYGSEFVTASKE 159
           +QPII+YIPE E  G      +GF+PIA+YG EF   SK+
Sbjct: 172 RQPIIIYIPEREYHGRG----NGFIPIAEYGLEFSKDSKQ 207



 Score = 24.6 bits (52), Expect(2) = 3e-04
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 2   GGESELLVLSRITNSQLL 55
           GGESELLVLS++    ++
Sbjct: 159 GGESELLVLSKLCRQPII 176


>tr|A9SFY8|A9SFY8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_211921 PE=4 SV=1
          Length = 289

 Score = 37.0 bits (84), Expect(2) = 0.21
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +1

Query: 40  QQPIIVYIPEHETKGFSGSWRSGFVPIAQYGSEFVTASKEVACKPVRLLFSGSNHYDLL 216
           + PI VY+ E +TK       SG + IA+YG E           P+R+L+ G  HY+ L
Sbjct: 233 EMPITVYMTEEKTK-------SGLIAIAEYGQEHGKID------PIRVLYHGFGHYEAL 278



 Score = 20.4 bits (41), Expect(2) = 0.21
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 2   GGESELLVLSRI 37
           GGE ELL+LS +
Sbjct: 220 GGEPELLMLSHV 231