BP916650 |
Clone id |
YMU001_000090_A06 |
Library |
YMU01 |
Length |
486 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000090_A06. |
Accession |
BP916650 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4146Contig1 |
Sequence |
TTGATTCACAACCATTGTTCCGTCAAAATGCTTAAAAGAACACTCACACTCTCAATCACA GCCATTCCAATTGCCCGCATTGTGCCGTAGCACATAAACAATGTGAAATAAAAATACTCA CCTCACTTTTTATATTTTTTGATGCATATCTACACAACACTTTCAGGCCCCTCCCAACAA TATTTCCAAGTACCAATATGCACATCAAGTTCAGACAGGCTGGCATCATTTAGCATACTA CATCACTGTCTTTTTCTTGTGACCAGCAATCGCAACTACCCCGCCAGTTACCAGAGGATC CAAACCGGGGATAACCCATGTCAAGCAGAAACCCTTGAGAATTCCATGACAGTTACTTCC ATCCCTTAGCTTCAGGGACGTGAGTGCAGATTGCCTCATCCACTTCTCAAACTCCTCTGT TCCCATGCTGAACTTTGCATTTTGCTATGTGCCATTGCATAAAATCTCATGTTCCTTCAG ATGTCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8CY42 |
Definition |
sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis |
Align length |
71 |
Score (bit) |
35.8 |
E-value |
0.11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916650|Adiantum capillus-veneris mRNA, clone: YMU001_000090_A06. (486 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis G... 36 0.11 sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (... 36 0.11 sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melite... 36 0.11 sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortu... 36 0.11 sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortu... 36 0.11 sp|O19133|G6PC_CANFA Glucose-6-phosphatase OS=Canis familiaris G... 31 3.4 sp|Q29RU6|G6PC_BOVIN Glucose-6-phosphatase OS=Bos taurus GN=G6PC... 31 3.4 sp|P03380|ENV_BLVJ Envelope glycoprotein OS=Bovine leukemia viru... 30 5.8 sp|P25507|ENV_BLVB5 Envelope glycoprotein OS=Bovine leukemia vir... 30 5.8 sp|P25506|ENV_BLVB2 Envelope glycoprotein OS=Bovine leukemia vir... 30 5.8 sp|P25505|ENV_BLVAV Envelope glycoprotein OS=Bovine leukemia vir... 30 5.8 sp|P25057|ENV_BLVAU Envelope glycoprotein OS=Bovine leukemia vir... 30 5.8 sp|P25504|ENV_BLVAF Envelope glycoprotein OS=Bovine leukemia vir... 30 5.8 sp|P51519|ENV_BLV Envelope glycoprotein OS=Bovine leukemia virus... 30 5.8 sp|Q4V8G4|WDR78_RAT WD repeat-containing protein 78 OS=Rattus no... 30 7.5 sp|P16490|ORF2A_CMVFN RNA-directed RNA polymerase 2A OS=Cucumber... 30 7.5 sp|P35575|G6PC_HUMAN Glucose-6-phosphatase OS=Homo sapiens GN=G6... 30 7.6 sp|Q19KA1|G6PC_FELCA Glucose-6-phosphatase OS=Felis silvestris c... 30 7.6 sp|Q6W5P4|NPSR1_HUMAN Neuropeptide S receptor OS=Homo sapiens GN... 29 9.9
>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis GN=rsh PE=1 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 0.11 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rsh PE=3 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 0.11 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis GN=rsh PE=1 SV=2 Length = 750
Score = 35.8 bits (81), Expect = 0.11 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortus GN=rsh PE=1 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 0.11 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh PE=3 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 0.11 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>sp|O19133|G6PC_CANFA Glucose-6-phosphatase OS=Canis familiaris GN=G6PC PE=1 SV=1 Length = 357
Score = 30.8 bits (68), Expect = 3.4 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%) Frame = +1
Query: 139 LMHIYTTLSGPSQQ---YFQVPICTSSSDRLASFSILHHCL 252 L+H++ +L PSQ ++ + C S++ LAS S++ +CL Sbjct: 305 LLHLFDSLKPPSQTELIFYTLSFCKSAAVPLASVSLIPYCL 345
>sp|Q29RU6|G6PC_BOVIN Glucose-6-phosphatase OS=Bos taurus GN=G6PC PE=2 SV=1 Length = 357
Score = 30.8 bits (68), Expect = 3.4 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +1
Query: 139 LMHIYTTLSGPSQQ---YFQVPICTSSSDRLASFSILHHCLFLVTSNRN 276 L+H++ +L PSQ ++ + C S++ LAS S++ +CL V N Sbjct: 305 LLHLFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLAWVLGQPN 353
>sp|P03380|ENV_BLVJ Envelope glycoprotein OS=Bovine leukemia virus (isolate Japanese BLV-1) GN=env PE=1 SV=1 Length = 515
Score = 30.0 bits (66), Expect = 5.8 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -1
Query: 351 CHGILKGFCLTWVIPGLDPLVT 286 CHGI F LTW I G DPL+T Sbjct: 152 CHGI---FTLTWEIWGYDPLIT 170
>sp|P25507|ENV_BLVB5 Envelope glycoprotein OS=Bovine leukemia virus (isolate Belgium LB59) GN=env PE=3 SV=1 Length = 515
Score = 30.0 bits (66), Expect = 5.8 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -1
Query: 351 CHGILKGFCLTWVIPGLDPLVT 286 CHGI F LTW I G DPL+T Sbjct: 152 CHGI---FTLTWEIWGYDPLIT 170
>sp|P25506|ENV_BLVB2 Envelope glycoprotein OS=Bovine leukemia virus (isolate Belgium LB285) GN=env PE=3 SV=1 Length = 515
Score = 30.0 bits (66), Expect = 5.8 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -1
Query: 351 CHGILKGFCLTWVIPGLDPLVT 286 CHGI F LTW I G DPL+T Sbjct: 152 CHGI---FTLTWEIWGYDPLIT 170
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B2SAD0 |
Definition |
tr|B2SAD0|B2SAD0_BRUA1 RelA/SpoT family protein OS=Brucella abortus (strain S19) |
Align length |
71 |
Score (bit) |
35.8 |
E-value |
1.1 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916650|Adiantum capillus-veneris mRNA, clone: YMU001_000090_A06. (486 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B2SAD0|B2SAD0_BRUA1 RelA/SpoT family protein OS=Brucella abor... 36 1.1 tr|B0CKX8|B0CKX8_BRUSI RelA/SpoT family protein OS=Brucella suis... 36 1.1 tr|A9MA27|A9MA27_BRUC2 RelA/SpoT family protein OS=Brucella cani... 36 1.1 tr|A6X295|A6X295_OCHA4 (P)ppGpp synthetase I, SpoT/RelA OS=Ochro... 36 1.1 tr|Q11JT2|Q11JT2_MESSB (P)ppGpp synthetase I, SpoT/RelA OS=Mesor... 35 1.9 tr|A0NMC4|A0NMC4_9RHOB GTP pyrophosphokinase OS=Labrenzia aggreg... 34 3.2 tr|Q6G087|Q6G087_BARQU GTP pyrophosphokinase OS=Bartonella quint... 33 7.2 tr|Q20382|Q20382_CAEEL Putative uncharacterized protein OS=Caeno... 33 9.1 tr|A9LY81|A9LY81_BLV Gp51 protein (Fragment) OS=Bovine leukemia ... 33 9.3 tr|Q985B2|Q985B2_RHILO GTP pyrophosphokinase OS=Rhizobium loti G... 33 9.3 tr|Q6G464|Q6G464_BARHE GTP pyrophosphokinase OS=Bartonella hense... 33 9.3 tr|A1US31|A1US31_BARBK GTP pyrophosphokinase OS=Bartonella bacil... 33 9.3
>tr|B2SAD0|B2SAD0_BRUA1 RelA/SpoT family protein OS=Brucella abortus (strain S19) GN=BAbS19_I06290 PE=4 SV=1 Length = 720
Score = 35.8 bits (81), Expect = 1.1 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 276 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 335
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 336 TIEQLSEGDNP 346
>tr|B0CKX8|B0CKX8_BRUSI RelA/SpoT family protein OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=BSUIS_A0680 PE=4 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 1.1 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>tr|A9MA27|A9MA27_BRUC2 RelA/SpoT family protein OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=BCAN_A0665 PE=4 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 1.1 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>tr|A6X295|A6X295_OCHA4 (P)ppGpp synthetase I, SpoT/RelA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=Oant_2636 PE=3 SV=1 Length = 748
Score = 35.8 bits (81), Expect = 1.1 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKMSTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>tr|Q11JT2|Q11JT2_MESSB (P)ppGpp synthetase I, SpoT/RelA OS=Mesorhizobium sp. (strain BNC1) GN=Meso_0946 PE=3 SV=1 Length = 745
Score = 35.0 bits (79), Expect = 1.9 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 16/82 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLF------------LVTSNRNYPA-- 285 I+TT+ GPS+Q ++ I T DR+A + + H L+ ++ + N A Sbjct: 306 IHTTIVGPSRQRVELQIRTREMDRIAEYGVAAHSLYKDFGPKLNGTGHQISKDTNAYAWL 365
Query: 286 --SYQRIQTGDNPCQAETLENS 345 + +++ GDNP E LEN+ Sbjct: 366 RHTIEQLSEGDNP--EEFLENT 385
>tr|A0NMC4|A0NMC4_9RHOB GTP pyrophosphokinase OS=Labrenzia aggregata IAM 12614 GN=SIAM614_10333 PE=3 SV=1 Length = 748
Score = 34.3 bits (77), Expect = 3.2 Identities = 15/36 (41%), Positives = 24/36 (66%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLF 255 I+TT+ GPS+Q ++ I T + DR+A + I H L+ Sbjct: 306 IHTTIVGPSRQRVELQIRTIAMDRVAEYGIAAHALY 341
>tr|Q6G087|Q6G087_BARQU GTP pyrophosphokinase OS=Bartonella quintana GN=spoT PE=3 SV=1 Length = 742
Score = 33.1 bits (74), Expect = 7.2 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLF-----------LVTSNRNYPASYQ 294 I+TT+ GPS+Q ++ I T++ D +A + + H ++ L Y Q Sbjct: 306 IHTTIVGPSRQRVELQIRTAAMDEIAEYGVAAHSIYKDHGSDYSTSKLSNETNAYAWLRQ 365
Query: 295 RIQT---GDNP 318 IQ+ GDNP Sbjct: 366 TIQSLSDGDNP 376
>tr|Q20382|Q20382_CAEEL Putative uncharacterized protein OS=Caenorhabditis elegans GN=F44A2.7 PE=1 SV=2 Length = 313
Score = 32.7 bits (73), Expect = 9.1 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = +3
Query: 39 NTHTLNHSHSNCPHCAVAHKQCEIKILTSLFIFFDAYLHNTFRPLPTIFPSTNMHIKF 212 N T++ +S+CP A IL S+ F+ +TF+ L TI+PSTN+ I F Sbjct: 223 NRLTISPLYSDCPEIAAM-------ILKSILNSFE---FSTFKSLSTIYPSTNLAIPF 270
>tr|A9LY81|A9LY81_BLV Gp51 protein (Fragment) OS=Bovine leukemia virus GN=env PE=4 SV=1 Length = 249
Score = 32.7 bits (73), Expect = 9.3 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1
Query: 351 CHGILKGFCLTWVIPGLDPLVTGGVVAIAGH 259 CHGI F LTW I G DPL+T + I H Sbjct: 128 CHGI---FTLTWEIKGYDPLITFSLHKIPDH 155
>tr|Q985B2|Q985B2_RHILO GTP pyrophosphokinase OS=Rhizobium loti GN=mlr7755 PE=3 SV=1 Length = 742
Score = 32.7 bits (73), Expect = 9.3 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 16/82 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYPASY------------ 291 I+TT+ GPS+Q ++ I T +++A + + H ++ T + A + Sbjct: 306 IHTTIVGPSRQRVELQIRTREMNKIAEYGVAAHSIYKDTGGKTNGAGHAISKETNAYAWL 365
Query: 292 ----QRIQTGDNPCQAETLENS 345 +++ GDNP + LEN+ Sbjct: 366 RRTIEQLAEGDNP--EDFLENT 385
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