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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916662
Clone id YMU001_000090_B06
Library
Length 492
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACGTGGATGTCTGGGCCAATTTTGGGATAGCAGCAATAGAAGTTGGAAAGGAACATATTA
ATTGGTCTCCCATTTCCACCTTAGCAAGACTCAAAGTTTGTTGGCCACTAGAGCTTTGGA
ATGGCTAGACAGAGGTGGGATACCCTCTTGTGAATCTAGGTTCAAGTGGAAGGCGTGGTG
GTGGCCCAAGAATAGACATTTCATAAAATCACAAACCAAGGATGTGTACAACACCCTTCT
GATCTCAAAGGATTGGTTTTTCGCTTTGAATAAGTAATGGGGCAACCAATGGTAGGAATC
AAGATGGGTGTCGATCACTAAGAACATCTGGTTCCCACATTTTTCGCTTAGGATGAAGGT
TTTTCTTTCGAGGTGTTTTGGGGCCTTACCAATGGGTGTGAATATTGTATTGGTCATGAT
AGATGCTCGCAATGCCAAACGGCTAGGGAGGACCTCCCTCACTTATTCAAGGAATGCCCA
ATAATAAGTGGA
■■Homology search results ■■ -
sp_hit_id Q95BZ7
Definition sp|Q95BZ7|MATK_ACTDE Maturase K OS=Actinidia deliciosa
Align length 87
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916662|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_B06.
         (492 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q95BZ7|MATK_ACTDE Maturase K OS=Actinidia deliciosa GN=matK P...    32   1.6  
sp|O47141|MATK_ACTCH Maturase K OS=Actinidia chinensis GN=matK P...    30   4.5  
sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog OS=Nyc...    30   4.5  

>sp|Q95BZ7|MATK_ACTDE Maturase K OS=Actinidia deliciosa GN=matK PE=3
           SV=1
          Length = 504

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/87 (26%), Positives = 40/87 (45%)
 Frame = +2

Query: 71  HFHLSKTQSLLATRALEWLDRGGIPSCESRFKWKAWWWPKNRHFIKSQTKDVYNTLLISK 250
           +FH+ +++S+      +      I S    F  + +++ K  HF+K  TKD  + L + K
Sbjct: 212 NFHVCESESIFVFLRNQSSHLRSISS--GTFLERIYFYGKIEHFVKVFTKDFQDILWLFK 269

Query: 251 DWFFALNK*WGNQW*ESRWVSITKNIW 331
           D F    +  GN    S+  S+  N W
Sbjct: 270 DPFMHYVRYQGNSILASKGTSLLMNKW 296


>sp|O47141|MATK_ACTCH Maturase K OS=Actinidia chinensis GN=matK PE=3
           SV=1
          Length = 504

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 22/87 (25%), Positives = 39/87 (44%)
 Frame = +2

Query: 71  HFHLSKTQSLLATRALEWLDRGGIPSCESRFKWKAWWWPKNRHFIKSQTKDVYNTLLISK 250
           +FH+ +++S+      +      I S    F  + +++ K  HF+K  TKD  + L + K
Sbjct: 212 NFHVCESESIFVFLRNQXSHLRSISS--GTFLERIYFYGKIEHFVKVFTKDFQDILWLFK 269

Query: 251 DWFFALNK*WGNQW*ESRWVSITKNIW 331
           D F    +  G     S+  S+  N W
Sbjct: 270 DPFMHYVRYQGKSILASKGTSLLMNKW 296


>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog
            OS=Nycticebus coucang PE=1 SV=1
          Length = 1260

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
 Frame = +2

Query: 62   LVSHFHLSKTQSLLATRALEWLDR-GGIPSCESRFKWK------AWWWPKNRHF-----I 205
            ++ HF  ++ +  +A   L   ++ GGI   + R  +K      AW+W KNR       I
Sbjct: 842  IILHFIWNQKKPQIAKTLLSNKNKAGGITLPDLRLYYKSIVIKTAWYWHKNREVDVWNRI 901

Query: 206  KSQTKD--VYNTLLISKDWFFALNK*WG-----NQW*ESRWVSITKNIWF-PHFSLRMKV 361
            ++Q  D   Y+ L+  K      N  WG     N+W    W++I + +   PH S   K+
Sbjct: 902  ENQEMDPATYHYLIFDKP---IKNIQWGKDSLFNKWCWVNWLAICRRLKLDPHLSPLTKI 958
tr_hit_id A8HRF4
Definition tr|A8HRF4|A8HRF4_9HIV1 Envelope glycoprotein OS=Human immunodeficiency virus 1
Align length 106
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916662|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_B06.
         (492 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8HRF4|A8HRF4_9HIV1 Envelope glycoprotein OS=Human immunodefi...    35   1.9  
tr|Q4E330|Q4E330_TRYCR Putative uncharacterized protein OS=Trypa...    35   1.9  
tr|Q4DT25|Q4DT25_TRYCR Putative uncharacterized protein OS=Trypa...    35   1.9  
tr|Q8UTD6|Q8UTD6_9HIV1 Envelope glycoprotein OS=Human immunodefi...    35   2.4  
tr|Q8UTM6|Q8UTM6_9HIV1 Envelope glycoprotein OS=Human immunodefi...    34   4.2  
tr|Q95BZ3|Q95BZ3_9ERIC Maturase K OS=Actinidia fulvicoma var. la...    34   4.2  
tr|Q94PT8|Q94PT8_9ERIC Maturase K OS=Actinidia melliana GN=matK ...    34   4.2  
tr|Q7IFN0|Q7IFN0_9ERIC Maturase K OS=Actinidia glaucophylla GN=m...    34   4.2  
tr|Q8AF21|Q8AF21_9HIV1 Envelope glycoprotein OS=Human immunodefi...    33   7.1  
tr|A1XIR5|A1XIR5_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    33   7.1  
tr|A8M8F9|A8M8F9_SALAI Binding-protein-dependent transport syste...    33   7.1  
tr|Q95BZ8|Q95BZ8_9ERIC Maturase K OS=Clematoclethra lasioclada G...    33   9.3  

>tr|A8HRF4|A8HRF4_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 864

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
 Frame = +2

Query: 167 WKAWWWPKNRHFIKSQTKDVYNTLLISKDW-------FFALNK*WGNQW*ESRWVSITKN 325
           W    W +    I + TK++YN +  S++           L+K W + W    W  ITK 
Sbjct: 635 WDNMTWMEWEREISNYTKEIYNLIEESQNQQEKNELELLELDK-WASLW---NWFDITKW 690

Query: 326 IWFPHFSLRMKVFLSRCFGALPMGVNIVLVMIDARNAKRLGRTSLT 463
           +W+      +K+F+    G   +G+ IV  ++   N  RLG   L+
Sbjct: 691 LWY------IKIFIMVVGGL--VGLRIVFTVLSIVNRVRLGYLPLS 728


>tr|Q4E330|Q4E330_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053506435.20 PE=4 SV=1
          Length = 2724

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 309  THLDSYHWLPHYLFKAKNQSFEIRRVLYTSLVCDFMK 199
            TH D +HWL H +++A    FE+R +L  S+ C  +K
Sbjct: 2215 THTDIFHWLGHVVYRAIPFLFELRLLLDWSVSCTALK 2251


>tr|Q4DT25|Q4DT25_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053506265.20 PE=4 SV=1
          Length = 2729

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 309  THLDSYHWLPHYLFKAKNQSFEIRRVLYTSLVCDFMK 199
            TH D +HWL H +++A    FE+R +L  S+ C  +K
Sbjct: 2220 THTDIFHWLGHVVYRAIPFLFELRLLLDWSVSCTALK 2256


>tr|Q8UTD6|Q8UTD6_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 859

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
 Frame = +2

Query: 98  LLATRALEWLDRGGIPSCESRFKWKAWW-WPKNRHFIKSQTKDVYNTLLIS-------KD 253
           L+ T  + W       S +  +K   W  W K    I + TK +YN L  S       + 
Sbjct: 598 LICTTPVPWNSSWSNKSVDDIWKNMTWMEWDKE---INNYTKIIYNLLEKSQKQQEKNEQ 654

Query: 254 WFFALNK*WGNQW*ESRWVSITKNIWFPHFSLRMKVFLSRCFGALPMGVNIVLVMIDARN 433
              AL+  W N W    W SI++ +W+      +K+F+    G +  G+ I+  ++   N
Sbjct: 655 ELLALDS-WENLW---NWFSISRWLWY------IKIFIMIVGGLI--GLRIIFAVLSVVN 702

Query: 434 AKRLGRTSLTY 466
             R G + L++
Sbjct: 703 RVRQGYSPLSF 713


>tr|Q8UTM6|Q8UTM6_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 853

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
 Frame = +2

Query: 98  LLATRALEWLDRGGIPSCESRFKWKAWWWPKNRHFIKSQTKDVYNTLLISKDW------- 256
           L+ T A+ W       S +S   W    W +    I + T  +Y  L  S++        
Sbjct: 591 LICTTAVPWNSSWSNKSYDSI--WDNMTWMQWDREINNYTDTIYKLLEESQNQQEQNEKD 648

Query: 257 FFALNK*WGNQW*ESRWVSITKNIWFPHFSLRMKVFLSRCFGALPMGVNIVLVMIDARNA 436
             AL+  W + W    W SITK +W+      +K+F+    G +  G+ I+  ++   N 
Sbjct: 649 LLALDS-WQSLW---NWFSITKRLWY------IKIFIMIVGGLI--GLRIIFAVLSIINR 696

Query: 437 KRLGRTSLTY 466
            R G + L++
Sbjct: 697 VRQGYSPLSF 706


>tr|Q95BZ3|Q95BZ3_9ERIC Maturase K OS=Actinidia fulvicoma var.
           lanata GN=matK PE=3 SV=1
          Length = 504

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/87 (27%), Positives = 41/87 (47%)
 Frame = +2

Query: 71  HFHLSKTQSLLATRALEWLDRGGIPSCESRFKWKAWWWPKNRHFIKSQTKDVYNTLLISK 250
           +FH+ +++S+L     +      I S    F  + +++ K  HF+K  TKD  + L + K
Sbjct: 212 NFHVCESESILVFLRNQSSHLRSISS--GTFLERIYFYGKIEHFVKVFTKDFQDILWLFK 269

Query: 251 DWFFALNK*WGNQW*ESRWVSITKNIW 331
           D F    +  GN    S+  S+  N W
Sbjct: 270 DPFMHYVRYQGNSLLASKGTSLLMNKW 296


>tr|Q94PT8|Q94PT8_9ERIC Maturase K OS=Actinidia melliana GN=matK
           PE=3 SV=1
          Length = 504

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/87 (27%), Positives = 41/87 (47%)
 Frame = +2

Query: 71  HFHLSKTQSLLATRALEWLDRGGIPSCESRFKWKAWWWPKNRHFIKSQTKDVYNTLLISK 250
           +FH+ +++S+L     +      I S    F  + +++ K  HF+K  TKD  + L + K
Sbjct: 212 NFHVCESESILVFLRNQSSHLRSISS--GTFLERIYFYGKIEHFVKVFTKDFQDILWLFK 269

Query: 251 DWFFALNK*WGNQW*ESRWVSITKNIW 331
           D F    +  GN    S+  S+  N W
Sbjct: 270 DPFMHYVRYQGNSLLASKGTSLLMNKW 296


>tr|Q7IFN0|Q7IFN0_9ERIC Maturase K OS=Actinidia glaucophylla GN=matK
           PE=3 SV=1
          Length = 504

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/87 (27%), Positives = 41/87 (47%)
 Frame = +2

Query: 71  HFHLSKTQSLLATRALEWLDRGGIPSCESRFKWKAWWWPKNRHFIKSQTKDVYNTLLISK 250
           +FH+ +++S+L     +      I S    F  + +++ K  HF+K  TKD  + L + K
Sbjct: 212 NFHVCESESILVFLRNQSSHLRSISS--GTFLERIYFYGKIEHFVKVFTKDFQDILWLFK 269

Query: 251 DWFFALNK*WGNQW*ESRWVSITKNIW 331
           D F    +  GN    S+  S+  N W
Sbjct: 270 DPFMHYVRYQGNSLLASKGTSLLMNKW 296


>tr|Q8AF21|Q8AF21_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 853

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
 Frame = +2

Query: 167 WKAWWWPKNRHFIKSQTKDVYNTLLISKDW-------FFALNK*WGNQW*ESRWVSITKN 325
           W    W +    I + TK++YN +  S++           L+K W + W    W  ITK 
Sbjct: 624 WNNMTWMEWEREIDNYTKEIYNLIEESQNQQEKNEQELLELDK-WASLW---NWFEITKW 679

Query: 326 IWFPHFSLRMKVFLSRCFGALPMGVNIVLVMIDARNAKRLGRTSLT 463
           +W+      +K+F+    G   +G+ IV  ++   N  R G + L+
Sbjct: 680 LWY------IKIFIMIVGGL--VGLRIVCAILSIVNRVRQGYSPLS 717


>tr|A1XIR5|A1XIR5_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 666

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
 Frame = +2

Query: 167 WKAWWWPKNRHFIKSQTKDVYNTL--------LISKDWFFALNK*WGNQW*ESRWVSITK 322
           W    W +    I + T  +Y  L           KD F AL+  W N W   +W SITK
Sbjct: 426 WDNMTWMQWDREISNYTDTIYRLLDEAQKQQRKNEKD-FLALDS-WANFW---KWFSITK 480

Query: 323 NIWFPHFSLRMKVFLSRCFGALPMGVNIVLVMIDARNAKRLGRTSLTY 466
            +W+      +K+F+    G +  G+ I+  ++   N  R G + L++
Sbjct: 481 WLWY------IKIFIMIIGGLI--GLRIIFAVLSIVNRVRQGYSPLSF 520