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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916668
Clone id YMU001_000090_B12
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTCGTCCCCCATCCAAACTGATGCATAGACTGGATCTTCACACAAGCAAGCAGCAAGTCC
ACCTCAGTCTCTACACACAAGCAATCAGTTGCAGCACCACAAACAGTAAAATGTATCAAA
GCATACTTAAGAATAGGGGTGAACATAACATGCAGCCACATCATCCATGCACTCACATCA
CGCAGGGCCTCTGAAGATGTCTCCCAAGCCAACCCACGCACAAACAGCTTCCGATGGGCA
GGATCCTTGCTTGCAACTTCCCTAATATCATCTGCAATCGCAGGGTATTGAAAACCTCTG
CACGGTACCAACATCAAGCATGACCAGTCAAAGGCACATACTCTATTCAAAACCTCCCAT
GCAAGCAGTAACAAAATCAAACACTGGCACCCCCTTCCCAAAACAATATCAATGTTTGCT
TATCCTGACGATGACACTGTCTCCAAGCTTTACAAAGGGTTGGGAGCTAAACAACTGAAA
ATCCTCAGGTAAAAATCGGTTAACTACCAAGATAAAACAACAAAAGTACAGATGTCGAAG
AACCTTATAAATACGGCTAAGAACG
■■Homology search results ■■ -
sp_hit_id Q08473
Definition sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster
Align length 19
Score (bit) 31.6
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916668|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_B12.
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila mela...    32   2.8  
sp|Q5RAU9|ZN131_PONAB Zinc finger protein 131 OS=Pongo abelii GN...    30   8.2  
sp|P56299|RPOB_CHLVU DNA-directed RNA polymerase subunit beta OS...    30   8.2  
sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B...    30   8.2  
sp|Q3KD78|GLGB_PSEPF 1,4-alpha-glucan-branching enzyme OS=Pseudo...    30   8.2  
sp|Q8N8D9|YE002_HUMAN Putative uncharacterized protein LOC441108...    30   8.3  

>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila
           melanogaster GN=sqd PE=1 SV=3
          Length = 344

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -3

Query: 233 RKLFVRGLAWETSSEALRD 177
           RKLFV GL+WET+ + LRD
Sbjct: 56  RKLFVGGLSWETTEKELRD 74


>sp|Q5RAU9|ZN131_PONAB Zinc finger protein 131 OS=Pongo abelii
           GN=ZNF131 PE=2 SV=1
          Length = 589

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 204 PSQPTHKQLPMGRILACNFPNIICNRRVLKTSARYQH 314
           PS PT KQ  M      +F   ICN+R L+ SA  QH
Sbjct: 236 PSDPTSKQEHMKSHSTESFKCEICNKRYLRESAWKQH 272


>sp|P56299|RPOB_CHLVU DNA-directed RNA polymerase subunit beta
            OS=Chlorella vulgaris GN=rpoB PE=3 SV=1
          Length = 1301

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 72   YTQAISCSTTNSKMYQSILKNRGEHNMQPHHP 167
            Y    S S   SK+YQ+ LK R     +PHHP
Sbjct: 1109 YGAEASRSLVYSKLYQASLKTRNPWVFEPHHP 1140


>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B
           OS=Homo sapiens GN=HNRNPAB PE=1 SV=2
          Length = 332

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 305 PCRGFQYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRD 177
           P  G Q  A  D I    +++ A  K+FV GL+W+TS + L+D
Sbjct: 46  PPSGNQNGAEGDQINASKNEEDAG-KMFVGGLSWDTSKKDLKD 87


>sp|Q3KD78|GLGB_PSEPF 1,4-alpha-glucan-branching enzyme
           OS=Pseudomonas fluorescens (strain Pf0-1) GN=glgB PE=3
           SV=1
          Length = 743

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = -3

Query: 359 WEVLNRVCAFDWSCLMLVPCRGFQYPAIADDIREVASKDPAHRKL--FVRGLAWETSSEA 186
           W   N     DW  L     +G Q   +  D+  +  ++PA  +     +G  W    +A
Sbjct: 593 WREWNHDQQLDWYLLQYSEHKGVQ--KLVSDLNRLYREEPALHEQDDAPQGFQWLIGDDA 650

Query: 185 LRDVSAWMMW 156
           +  V AW+ W
Sbjct: 651 INSVYAWLRW 660


>sp|Q8N8D9|YE002_HUMAN Putative uncharacterized protein LOC441108
           OS=Homo sapiens PE=2 SV=2
          Length = 126

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
 Frame = -1

Query: 466 LPTLCKAWRQCHRQDKQTLILFWEGGASV*FCYCL--------HGRF*IEYVPLTGHA*C 311
           +P     WR+ H+ + QTL+L W     +  C CL        H  F +EY     HA C
Sbjct: 17  VPEFVAYWRKTHQGNLQTLLLHW-----LLLCSCLHHLYNASCHPAFPVEY----SHAVC 67

Query: 310 ------WYRAEVFNTLRLQMILGKLQARILPIGSCLCVGW 209
                 W     F++     +  K         +CLC  W
Sbjct: 68  CLQPRFWKEMSPFSSSSTTHLFSKCF-----FYTCLCWAW 102
tr_hit_id A9S9U5
Definition tr|A9S9U5|A9S9U5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 40
Score (bit) 69.3
E-value 1.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916668|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_B12.
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S9U5|A9S9U5_PHYPA Predicted protein (Fragment) OS=Physcomit...    69   1e-10
tr|A9NUP9|A9NUP9_PICSI Putative uncharacterized protein OS=Picea...    68   3e-10
tr|A7PVU6|A7PVU6_VITVI Chromosome chr8 scaffold_34, whole genome...    61   4e-08
tr|A5BGN9|A5BGN9_VITVI Putative uncharacterized protein OS=Vitis...    61   4e-08
tr|A9NVQ7|A9NVQ7_PICSI Putative uncharacterized protein OS=Picea...    57   7e-07
tr|Q2V9B8|Q2V9B8_SOLTU RNA-binding protein AKIP1-like OS=Solanum...    52   3e-05
tr|A7PG82|A7PG82_VITVI Chromosome chr6 scaffold_15, whole genome...    51   5e-05
tr|A5B1I9|A5B1I9_VITVI Putative uncharacterized protein OS=Vitis...    51   5e-05
tr|A9SEJ6|A9SEJ6_PHYPA Predicted protein (Fragment) OS=Physcomit...    49   2e-04
tr|A9TVT0|A9TVT0_PHYPA Predicted protein (Fragment) OS=Physcomit...    47   5e-04
tr|Q9LES2|Q9LES2_ARATH Putative uncharacterized protein T8M16_19...    47   7e-04
tr|Q94B29|Q94B29_ARATH Putative uncharacterized protein T8M16_19...    47   7e-04
tr|Q5ZDX8|Q5ZDX8_ORYSJ Heterogeneous nuclear ribonucleoprotein A...    47   0.001
tr|B6TV58|B6TV58_MAIZE Heterogeneous nuclear ribonucleoprotein A...    47   0.001
tr|A7Q9Y0|A7Q9Y0_VITVI Chromosome chr8 scaffold_68, whole genome...    45   0.002
tr|A5BZL6|A5BZL6_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|B8LRC5|B8LRC5_PICSI Putative uncharacterized protein OS=Picea...    43   0.010
tr|A9NL61|A9NL61_PICSI Putative uncharacterized protein OS=Picea...    43   0.010
tr|A5ADJ5|A5ADJ5_VITVI Putative uncharacterized protein (Chromos...    43   0.010
tr|Q8LLE6|Q8LLE6_VICFA RNA-binding protein AKIP1 OS=Vicia faba P...    42   0.018
tr|Q2PEU9|Q2PEU9_TRIPR Putative uncharacterized protein (Fragmen...    42   0.018
tr|Q2PET5|Q2PET5_TRIPR Putative uncharacterized protein (Fragmen...    42   0.018
tr|Q2HUH7|Q2HUH7_MEDTR RNA-binding region RNP-1 (RNA recognition...    42   0.018
tr|A7PL41|A7PL41_VITVI Chromosome chr7 scaffold_20, whole genome...    41   0.051
tr|A5BLC5|A5BLC5_VITVI Putative uncharacterized protein OS=Vitis...    41   0.051
tr|O80678|O80678_ARATH Putative RNA-binding protein (At2g41060/T...    40   0.067
tr|B6TJJ4|B6TJJ4_MAIZE RNA binding protein OS=Zea mays PE=2 SV=1       40   0.088
tr|B4FQC3|B4FQC3_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.088
tr|B4FLV1|B4FLV1_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.088
tr|B6SXV2|B6SXV2_MAIZE RNA-binding protein AKIP1 OS=Zea mays PE=...    39   0.19 

>tr|A9S9U5|A9S9U5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_44443 PE=4 SV=1
          Length = 210

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = -3

Query: 296 GFQYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRD 177
           G  +PA+ADDIR++ASKDP HRKLFVRGLAWETSS ALR+
Sbjct: 32  GSLFPAVADDIRDIASKDPVHRKLFVRGLAWETSSMALRE 71


>tr|A9NUP9|A9NUP9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 365

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 31/40 (77%), Positives = 36/40 (90%)
 Frame = -3

Query: 296 GFQYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRD 177
           G  YPAIA++I++VASKDPAHRKLFVRGLAWETSS+ L D
Sbjct: 48  GSSYPAIAEEIKDVASKDPAHRKLFVRGLAWETSSQTLCD 87


>tr|A7PVU6|A7PVU6_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025362001
           PE=4 SV=1
          Length = 907

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = -3

Query: 296 GFQYPAIADDIREVASKDPAHRKLFVRGLAWETSSEAL 183
           G QYP+IA++I+ VAS DP HRKLFVRGLAW T+SE L
Sbjct: 44  GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETL 81


>tr|A5BGN9|A5BGN9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031367 PE=4 SV=1
          Length = 294

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = -3

Query: 296 GFQYPAIADDIREVASKDPAHRKLFVRGLAWETSSEAL 183
           G QYP+IA++I+ VAS DP HRKLFVRGLAW T+SE L
Sbjct: 44  GSQYPSIAEEIKSVASADPVHRKLFVRGLAWNTTSETL 81


>tr|A9NVQ7|A9NVQ7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 442

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = -3

Query: 284 PAIADDIREVASKDPAHRKLFVRGLAWETSSEALRDV 174
           P + + IR++A KDPAHRK+FVRGL WET+SEAL+ V
Sbjct: 74  PQLLESIRKLADKDPAHRKIFVRGLGWETTSEALKSV 110


>tr|Q2V9B8|Q2V9B8_SOLTU RNA-binding protein AKIP1-like OS=Solanum
           tuberosum PE=2 SV=1
          Length = 498

 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 21/41 (51%), Positives = 31/41 (75%)
 Frame = -3

Query: 290 QYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRDVSA 168
           +YP   ++I+++A KDPAHRK+FV GL W+T++E L  V A
Sbjct: 140 KYPDFKENIQKLADKDPAHRKIFVHGLGWDTTAETLTSVFA 180


>tr|A7PG82|A7PG82_VITVI Chromosome chr6 scaffold_15, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017427001
           PE=4 SV=1
          Length = 516

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = -3

Query: 290 QYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRDV 174
           +YP   D +R +A  DPAHRK+FV GL W+T++E L  V
Sbjct: 176 KYPDFVDSVRRLADADPAHRKIFVHGLGWDTTAETLTSV 214


>tr|A5B1I9|A5B1I9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037734 PE=4 SV=1
          Length = 478

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = -3

Query: 290 QYPAIADDIREVASKDPAHRKLFVRGLAWETSSEALRDV 174
           +YP   D +R +A  DPAHRK+FV GL W+T++E L  V
Sbjct: 138 KYPDFVDSVRRLADADPAHRKIFVHGLGWDTTAETLTSV 176


>tr|A9SEJ6|A9SEJ6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_44234 PE=4 SV=1
          Length = 242

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 19/35 (54%), Positives = 28/35 (80%)
 Frame = -3

Query: 278 IADDIREVASKDPAHRKLFVRGLAWETSSEALRDV 174
           +  +IR++A KDP HRK+FVRGL W+T++E L+ V
Sbjct: 50  VLHEIRKLADKDPGHRKIFVRGLGWDTTTETLKTV 84


>tr|A9TVT0|A9TVT0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_8989 PE=4 SV=1
          Length = 84

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -3

Query: 248 KDPAHRKLFVRGLAWETSSEALRD 177
           KDP HRKLFVRGLAWETSS ALR+
Sbjct: 1   KDPVHRKLFVRGLAWETSSVALRE 24