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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916679
Clone id YMU001_000090_C11
Library
Length 578
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAACAAATTAAAAAATGTGGGAGATTAATACAAGGTTCATAAGAGAAGTGTTGCATCTGT
TTCCGACCATCTCTTACGAATAATCTCACCATGGATATGTTCACCCATGTCAGCTTCTCA
CATAAAGCACAAGCTTTGAAGATGCAAGCAAAGGTGATCGTATCTAGAGAGAGGCCCCTC
ATTTGCATCCTCTAAACATTGCTCATACCCTTGCTGGGCATACTCTGCATAATGCACAAC
TGGTCACAAGAGCCCCACATCCTGAATACGACACTTGTCGAGCACCTTTTGTGCTTCAAT
GACTGCCACATTTGGCAACATCTTTTCCAAAAAAACTGACATTGCGTTGTGAGTCAAATC
CTCAAATTTCAAGGAAATTGGACCCACACTAGTAATTGAAATTGCATAGAGCTTCACCCA
AACATCTCTCGATGACATGTATATATTTACCATGTCAGCTTCTTACATAATTCCAGATAC
AAGTAGAAAAGATTGCATTTGGAGAGAGGCCCTTTCTTCCAAGCAATCAGCCAAGAGCTT
CTTTACCCATGTACTCCCCAAAGAAGTGTGCTCCAAGA
■■Homology search results ■■ -
sp_hit_id O49680
Definition sp|O49680|PP324_ARATH Pentatricopeptide repeat-containing protein At4g19220, mitochondrial OS=Arabidopsis thaliana
Align length 72
Score (bit) 39.7
E-value 0.01
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916679|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_C11.
         (564 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O49680|PP324_ARATH Pentatricopeptide repeat-containing protei...    40   0.010
sp|Q9PQ32|SYFA_UREPA Phenylalanyl-tRNA synthetase alpha chain OS...    31   3.7  
sp|B1AJ99|SYFA_UREP2 Phenylalanyl-tRNA synthetase alpha chain OS...    31   3.7  
sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protei...    31   4.9  
sp|Q8CGB3|UACA_MOUSE Uveal autoantigen with coiled-coil domains ...    30   8.3  

>sp|O49680|PP324_ARATH Pentatricopeptide repeat-containing protein
           At4g19220, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E2 PE=2 SV=2
          Length = 951

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -1

Query: 243 WGSCDQLCIMQSMPSKGMSNV*RMQMRGLSLDTITFACIFKACALCEKLTWVNISMVRLF 64
           W +    C+    P K +     M   G   DT+TF+C+  AC+  E+LT +  S+  L 
Sbjct: 257 WNTIMTKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVISACSSIEELT-LGESLHGLV 315

Query: 63  VRDGRKQMQHFS 28
           ++ G     H S
Sbjct: 316 IKSGYSPEAHVS 327


>sp|Q9PQ32|SYFA_UREPA Phenylalanyl-tRNA synthetase alpha chain
           OS=Ureaplasma parvum GN=pheS PE=3 SV=1
          Length = 333

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 153 LDTITFACIFKACALCEKLTWVNI 82
           +D   F C  K CA+C+K TW+ I
Sbjct: 253 VDVQCFKCDLKGCAVCKKSTWIEI 276


>sp|B1AJ99|SYFA_UREP2 Phenylalanyl-tRNA synthetase alpha chain
           OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 /
           NCTC 11736) GN=pheS PE=3 SV=1
          Length = 333

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 153 LDTITFACIFKACALCEKLTWVNI 82
           +D   F C  K CA+C+K TW+ I
Sbjct: 253 VDVQCFKCDLKGCAVCKKSTWIEI 276


>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein
           At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
          Length = 548

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 213 QSM-PSKGMSNV*RMQMRGLSLDTITFACIFKACALCEKLTW 91
           QSM P K +S    M+ RG+S D  TF  + KAC+   KL W
Sbjct: 89  QSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACS---KLEW 127


>sp|Q8CGB3|UACA_MOUSE Uveal autoantigen with coiled-coil domains and
           ankyrin repeats OS=Mus musculus GN=Uaca PE=1 SV=2
          Length = 1411

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 115 TSFEDASKGDRI*REAPHLHPLNIAHTLAGHTLHNAQLVTRAPHPEYD 258
           T+ E+ +KG  + R+ P L   N++HT    ++ + Q   R PH   D
Sbjct: 256 TASENTNKGRELWRKGPPLQQRNLSHTQDEGSVKSTQREQREPHSFQD 303
tr_hit_id Q3J0Y1
Definition tr|Q3J0Y1|Q3J0Y1_RHOS4 Putative uncharacterized protein OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Align length 46
Score (bit) 34.3
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916679|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_C11.
         (564 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3J0Y1|Q3J0Y1_RHOS4 Putative uncharacterized protein OS=Rhodo...    34   4.9  
tr|A3PLB9|A3PLB9_RHOS1 FAD dependent oxidoreductase OS=Rhodobact...    34   4.9  
tr|A7PUI0|A7PUI0_VITVI Chromosome chr7 scaffold_31, whole genome...    33   8.3  
tr|A5CA14|A5CA14_VITVI Putative uncharacterized protein OS=Vitis...    33   8.3  
tr|P91289|P91289_CAEEL Putative uncharacterized protein OS=Caeno...    33   8.3  

>tr|Q3J0Y1|Q3J0Y1_RHOS4 Putative uncharacterized protein
           OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
           NCIB 8253 / DSM 158) GN=RHOS4_19850 PE=4 SV=1
          Length = 433

 Score = 34.3 bits (77), Expect = 4.9
 Identities = 23/46 (50%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 127 DASKGDRI*REAPHLHPLNIAHTL------AGHTLHNAQLVTRAPH 246
           DA  G  I R A HLHPLN A  L      AG  LH   LVTR  H
Sbjct: 177 DAYVGGDIDRGAGHLHPLNFAIGLARACDAAGVRLHEQSLVTRIVH 222


>tr|A3PLB9|A3PLB9_RHOS1 FAD dependent oxidoreductase OS=Rhodobacter
           sphaeroides (strain ATCC 17029 / ATH 2.4.9)
           GN=Rsph17029_2032 PE=4 SV=1
          Length = 433

 Score = 34.3 bits (77), Expect = 4.9
 Identities = 23/46 (50%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 127 DASKGDRI*REAPHLHPLNIAHTL------AGHTLHNAQLVTRAPH 246
           DA  G  I R A HLHPLN A  L      AG  LH   LVTR  H
Sbjct: 177 DAYVGGDIDRGAGHLHPLNFAIGLARACDAAGVRLHEQSLVTRIVH 222


>tr|A7PUI0|A7PUI0_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023808001
           PE=4 SV=1
          Length = 950

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = -1

Query: 339 LTTQCQFFWKRC-C-----QMWQSLKHKRCSTSVVFRMWGSCDQLCIMQSMPSKGMSNV* 178
           L+T+  F + +C C     +++  + HK   T      W +     +    P   +    
Sbjct: 109 LSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFT------WNAMIGAYVTNGEPLGSLELYR 162

Query: 177 RMQMRGLSLDTITFACIFKACAL 109
            M++ G+ LD  TF CI KAC L
Sbjct: 163 EMRVSGIPLDACTFPCILKACGL 185


>tr|A5CA14|A5CA14_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_014689 PE=4 SV=1
          Length = 957

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
 Frame = -1

Query: 339 LTTQCQFFWKRC-C-----QMWQSLKHKRCSTSVVFRMWGSCDQLCIMQSMPSKGMSNV* 178
           L+T+  F + +C C     +++  + HK   T      W +     +    P   +    
Sbjct: 116 LSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFT------WNAMIGAYVTNGEPLGSLELYR 169

Query: 177 RMQMRGLSLDTITFACIFKACAL 109
            M++ G+ LD  TF CI KAC L
Sbjct: 170 EMRVSGIPLDACTFPCILKACGL 192


>tr|P91289|P91289_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=F27C1.11 PE=2 SV=3
          Length = 1037

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 382 LKLHRASPKHLSMTCIYLPCQLLT*FQIQVEKIAFGERPFLPSNQPRASLPMYSPKKCAP 561
           LK      KH ++    L   +   ++IQ+      ERP+L  N  +  LP   PK+ AP
Sbjct: 93  LKKKTTKKKHFTLVPKLLIFNVNYFYRIQIIACPRNERPYLNENSTKEKLPQILPKRYAP 152

Query: 562 R 564
           R
Sbjct: 153 R 153