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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916682
Clone id YMU001_000090_D02
Library
Length 341
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCATTTGAATTGACTACTTGACCTTTCTTGAGAGCTATTACAGTTAAAAAGCCTGTACAA
AGGAGCCTTGTGTGGCTTAATTGCTAAAAACAAACCTTCAATCAAGATGCAAAACAACTT
TGCCATGAGCTTGTTTTCTTTCTTGACAATAGTGAGCCTGTGCTGCCTCCCACAAAGAGA
AAACTTTACCGACAGGAATCTTCAGTTTTCCATTTCTCACTAACATTGCAATGTCCTGAA
GGGCTTCAGAATCAGTCCTCATAATAGTCCAGGCATACTCAATGCCATAGGCTTGTCGGT
ATTGAACTTGCTTCTTGAGCAAAACAGCAGCCGCTGCTGCA
■■Homology search results ■■ -
sp_hit_id Q0VC50
Definition sp|Q0VC50|RT4I1_BOVIN Reticulon-4-interacting protein 1 OS=Bos taurus
Align length 61
Score (bit) 40.4
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916682|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_D02.
         (341 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0VC50|RT4I1_BOVIN Reticulon-4-interacting protein 1 OS=Bos t...    40   0.003
sp|Q8WWV3|RT4I1_HUMAN Reticulon-4-interacting protein 1 OS=Homo ...    39   0.011
sp|Q924D0|RT4I1_MOUSE Reticulon-4-interacting protein 1 OS=Mus m...    38   0.018
sp|Q7T3C7|RT4I1_DANRE Reticulon-4-interacting protein 1 homolog ...    37   0.031

>sp|Q0VC50|RT4I1_BOVIN Reticulon-4-interacting protein 1 OS=Bos
           taurus GN=RTN4IP1 PE=2 SV=1
          Length = 396

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -2

Query: 286 GIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHGKVVLH 107
           G+ Y W         L DIA LV  GK++  + K F   +  +A    ER  A GK V++
Sbjct: 335 GVHYRWAFFMASGPCLDDIAELVEAGKIQPVIEKTFPFSKVPEAFLKVERGHARGKTVIN 394

Query: 106 L 104
           +
Sbjct: 395 V 395


>sp|Q8WWV3|RT4I1_HUMAN Reticulon-4-interacting protein 1 OS=Homo
           sapiens GN=RTN4IP1 PE=1 SV=2
          Length = 396

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 286 GIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHGKVVLH 107
           G+ Y W         L DIA LV  GK++  + + F   +  +A    ER  A GK V++
Sbjct: 335 GVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVIN 394

Query: 106 L 104
           +
Sbjct: 395 V 395


>sp|Q924D0|RT4I1_MOUSE Reticulon-4-interacting protein 1 OS=Mus
           musculus GN=Rtn4ip1 PE=1 SV=2
          Length = 396

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 286 GIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHGKVVLH 107
           G+ Y W         L +IA LV  GK++  + + F   E  +A    ER  A GK V++
Sbjct: 335 GVHYRWAFFMASGPYLDEIAELVDAGKIRPVIERTFPFSEVPEAFLKVERGHARGKTVVN 394

Query: 106 L 104
           +
Sbjct: 395 V 395


>sp|Q7T3C7|RT4I1_DANRE Reticulon-4-interacting protein 1 homolog
           OS=Danio rerio GN=rtn4ip1 PE=2 SV=2
          Length = 387

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -2

Query: 286 GIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHGKVVLH 107
           G+ Y W        AL +++ +V  GK++  V +VFS  +  +A    E+  A GK V+ 
Sbjct: 321 GVHYRWGFFAPSGSALDEVSEMVDAGKVRPVVEEVFSFAQVPEAFQKVEQGHARGKTVVS 380

Query: 106 L 104
           +
Sbjct: 381 I 381
tr_hit_id B8LP99
Definition tr|B8LP99|B8LP99_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 67
Score (bit) 84.7
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916682|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_D02.
         (341 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LP99|B8LP99_PICSI Putative uncharacterized protein OS=Picea...    85   2e-15
tr|A9TL14|A9TL14_PHYPA Predicted protein OS=Physcomitrella paten...    77   6e-13
tr|A7P1U8|A7P1U8_VITVI Chromosome chr19 scaffold_4, whole genome...    74   5e-12
tr|Q84N44|Q84N44_SETIT Oxidoreductase OS=Setaria italica PE=2 SV=1     72   1e-11
tr|B6TEK2|B6TEK2_MAIZE Putative uncharacterized protein OS=Zea m...    69   1e-10
tr|Q9LK96|Q9LK96_ARATH Oxidoreductase-like protein (AT3g15090/K1...    68   3e-10
tr|Q8LBA4|Q8LBA4_ARATH Zinc-binding dehydrogenase, putative OS=A...    68   3e-10
tr|Q5JMM6|Q5JMM6_ORYSJ Putative NOGO-interacting mitochondrial p...    67   6e-10
tr|B8A9U0|B8A9U0_ORYSI Putative uncharacterized protein OS=Oryza...    67   6e-10
tr|A2ZXX0|A2ZXX0_ORYSJ Putative uncharacterized protein OS=Oryza...    67   6e-10
tr|Q019Q5|Q019Q5_OSTTA Oxidoreductase-like protein (ISS) (Fragme...    46   0.001
tr|A3KI68|A3KI68_STRAM Putative dehydrogenase OS=Streptomyces am...    45   0.001
tr|B5HLD2|B5HLD2_9ACTO Alcohol dehydrogenase zinc-binding domain...    44   0.003
tr|B3KJT7|B3KJT7_9BACI Alcohol dehydrogenase zinc-binding domain...    44   0.003
tr|B8NQ76|B8NQ76_ASPFL Zinc-binding oxidoreductase, putative OS=...    44   0.003
tr|Q89CX0|Q89CX0_BRAJA Blr7675 protein OS=Bradyrhizobium japonic...    44   0.004
tr|A4RX70|A4RX70_OSTLU Predicted protein OS=Ostreococcus lucimar...    44   0.004
tr|B6QF60|B6QF60_PENMA Zinc-binding oxidoreductase, putative OS=...    44   0.004
tr|B8MAT1|B8MAT1_9EURO Zinc-binding oxidoreductase, putative OS=...    44   0.005
tr|A3US27|A3US27_VIBSP Zinc-binding oxidoreductase OS=Vibrio spl...    43   0.007
tr|Q0W1R4|Q0W1R4_UNCMA Predicted NADPH:quinone reductase (Alcoho...    43   0.009
tr|A0ADJ0|A0ADJ0_STRAM Putative zinc-binding oxidoreductase OS=S...    42   0.015
tr|Q7AKR2|Q7AKR2_STRCO Putative zinc-binding oxidoreductase OS=S...    42   0.020
tr|B0RIS0|B0RIS0_CLAMS Putative zinc-binding oxidoreductase OS=C...    42   0.020
tr|A5CUS5|A5CUS5_CLAM3 Putative zinc-dependant oxidoreductase OS...    42   0.020
tr|O85702|O85702_STRLI Putative oxidoreductase OS=Streptomyces l...    42   0.020
tr|B4UAQ4|B4UAQ4_ANASK Alcohol dehydrogenase zinc-binding domain...    41   0.026
tr|B1MI24|B1MI24_MYCA9 Putative oxidoreductase OS=Mycobacterium ...    41   0.026
tr|B6PIN7|B6PIN7_BRAFL Putative uncharacterized protein OS=Branc...    41   0.026
tr|Q0YJF6|Q0YJF6_9DELT Alcohol dehydrogenase superfamily, zinc-c...    41   0.034

>tr|B8LP99|B8LP99_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 366

 Score = 84.7 bits (208), Expect = 2e-15
 Identities = 40/67 (59%), Positives = 51/67 (76%)
 Frame = -2

Query: 301 YRQAYGIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHG 122
           YRQ++G+EY W  MRTD E L++IA L R GK+KIPVGK F L EAA+AH+ +E K A G
Sbjct: 300 YRQSHGVEYWWIHMRTDFEGLEEIARLTRAGKMKIPVGKTFPLGEAAEAHHVKESKLASG 359

Query: 121 KVVLHLD 101
           KVVL ++
Sbjct: 360 KVVLEIE 366


>tr|A9TL14|A9TL14_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170661 PE=4 SV=1
          Length = 362

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 36/67 (53%), Positives = 49/67 (73%)
 Frame = -2

Query: 301 YRQAYGIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHG 122
           Y+Q++GI+Y W IMRTD+E L++I  L  +G+LKIPVG  F L  AA+AH  ++ K A G
Sbjct: 295 YKQSHGIDYWWPIMRTDAEGLEEICRLASDGRLKIPVGLTFPLEMAAEAHRARDSKNAGG 354

Query: 121 KVVLHLD 101
           KVVL +D
Sbjct: 355 KVVLKVD 361


>tr|A7P1U8|A7P1U8_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027760001
           PE=4 SV=1
          Length = 361

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 35/67 (52%), Positives = 45/67 (67%)
 Frame = -2

Query: 301 YRQAYGIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHG 122
           YR ++GIEY+WT MR DSE L +I  L   GKLKIPV K F + +  +AH  ++ +Q  G
Sbjct: 295 YRFSHGIEYSWTYMRADSEGLYEICKLSEAGKLKIPVEKTFPITQVREAHEAKDNRQIPG 354

Query: 121 KVVLHLD 101
           KVVL LD
Sbjct: 355 KVVLELD 361


>tr|Q84N44|Q84N44_SETIT Oxidoreductase OS=Setaria italica PE=2 SV=1
          Length = 364

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 33/67 (49%), Positives = 44/67 (65%)
 Frame = -2

Query: 301 YRQAYGIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHG 122
           YR ++G+EY WT MR D+E L +I  L   GKL+IPV K F + +  +AH  +E+K  HG
Sbjct: 298 YRSSHGVEYWWTYMRADAEGLHEIQRLSGAGKLQIPVEKTFPINQVREAHMAKEKKLVHG 357

Query: 121 KVVLHLD 101
           KVVL  D
Sbjct: 358 KVVLEFD 364


>tr|B6TEK2|B6TEK2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 363

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 34/67 (50%), Positives = 43/67 (64%)
 Frame = -2

Query: 301 YRQAYGIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHG 122
           YR ++GIEY WT MR D+E L +I  L   GKL+IPV K F +    +AH  +E+K A G
Sbjct: 297 YRYSHGIEYWWTYMRADAEGLHEIQRLSGAGKLQIPVEKTFPISHVREAHAAKEKKLAPG 356

Query: 121 KVVLHLD 101
           KVVL  D
Sbjct: 357 KVVLEFD 363


>tr|Q9LK96|Q9LK96_ARATH Oxidoreductase-like protein
           (AT3g15090/K15M2_24) OS=Arabidopsis thaliana
           GN=At3g15090 PE=2 SV=1
          Length = 366

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 33/64 (51%), Positives = 42/64 (65%)
 Frame = -2

Query: 301 YRQAYGIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHG 122
           Y+ ++GI+Y WT MR D E L +I  LV  GKLKIPV K F + +   AH  +E+KQ  G
Sbjct: 301 YQYSHGIDYWWTYMRADPEGLAEIQRLVGAGKLKIPVEKTFPITDVVAAHEAKEKKQIPG 360

Query: 121 KVVL 110
           KVVL
Sbjct: 361 KVVL 364


>tr|Q8LBA4|Q8LBA4_ARATH Zinc-binding dehydrogenase, putative
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 366

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 33/64 (51%), Positives = 42/64 (65%)
 Frame = -2

Query: 301 YRQAYGIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHG 122
           Y+ ++GI+Y WT MR D E L +I  LV  GKLKIPV K F + +   AH  +E+KQ  G
Sbjct: 301 YQYSHGIDYWWTYMRADPEGLAEIQRLVGAGKLKIPVEKTFPITDVVAAHEAKEKKQIPG 360

Query: 121 KVVL 110
           KVVL
Sbjct: 361 KVVL 364


>tr|Q5JMM6|Q5JMM6_ORYSJ Putative NOGO-interacting mitochondrial
           protein (Os01g0753100 protein) OS=Oryza sativa subsp.
           japonica GN=P0503C12.2 PE=4 SV=1
          Length = 365

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 32/67 (47%), Positives = 43/67 (64%)
 Frame = -2

Query: 301 YRQAYGIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHG 122
           YR ++GI+Y WT MR DSE L +I  L   GKL+IPV K F + +  +AH  +E++   G
Sbjct: 299 YRYSHGIDYWWTYMRADSEGLHEIQRLSGAGKLQIPVEKTFPISKVREAHEAKEKRLVPG 358

Query: 121 KVVLHLD 101
           KVVL  D
Sbjct: 359 KVVLEFD 365


>tr|B8A9U0|B8A9U0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03764 PE=4 SV=1
          Length = 365

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 32/67 (47%), Positives = 43/67 (64%)
 Frame = -2

Query: 301 YRQAYGIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHG 122
           YR ++GI+Y WT MR DSE L +I  L   GKL+IPV K F + +  +AH  +E++   G
Sbjct: 299 YRYSHGIDYWWTYMRADSEGLHEIQRLSGAGKLQIPVEKTFPISKVREAHEAKEKRLVPG 358

Query: 121 KVVLHLD 101
           KVVL  D
Sbjct: 359 KVVLEFD 365


>tr|A2ZXX0|A2ZXX0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_003392 PE=4 SV=1
          Length = 365

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 32/67 (47%), Positives = 43/67 (64%)
 Frame = -2

Query: 301 YRQAYGIEYAWTIMRTDSEALQDIAMLVRNGKLKIPVGKVFSLWEAAQAHYCQERKQAHG 122
           YR ++GI+Y WT MR DSE L +I  L   GKL+IPV K F + +  +AH  +E++   G
Sbjct: 299 YRYSHGIDYWWTYMRADSEGLHEIQRLSGAGKLQIPVEKTFPISKVREAHEAKEKRLVPG 358

Query: 121 KVVLHLD 101
           KVVL  D
Sbjct: 359 KVVLEFD 365