BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916686|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_D06.
         (343 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8SV54|Y707_ENCCU UPF0329 protein ECU07_0070 OS=Encephalitozo...    30   3.7  
sp|Q7TSA0|MIRO2_RAT Mitochondrial Rho GTPase 2 OS=Rattus norvegi...    30   4.9  
sp|O87627|NIFN_HERSE Nitrogenase iron-molybdenum cofactor biosyn...    30   4.9  
sp|Q7VDD5|COXX_PROMA Protoheme IX farnesyltransferase OS=Prochlo...    30   4.9  
sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa GN=...    29   6.4  
sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Pichia ...    29   8.3  
sp|P37463|CITB_SALTY Citrate utilization protein B OS=Salmonella...    29   8.3  

>sp|Q8SV54|Y707_ENCCU UPF0329 protein ECU07_0070 OS=Encephalitozoon
           cuniculi GN=ECU07_0070 PE=3 SV=1
          Length = 615

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -1

Query: 187 GSIACKVCGTFLDGLMSINSTTCSIMSLHVCRLYDSGVKETGVSAEMIYKRFFRLN 20
           G I C     F      I       +SL   ++Y  G K  G   EMIY+R F+ N
Sbjct: 121 GRIVCADDNRFQRSFDEIMEGYLKEISLDATKIYMKGNKSFGELLEMIYERMFKFN 176


>sp|Q7TSA0|MIRO2_RAT Mitochondrial Rho GTPase 2 OS=Rattus norvegicus
           GN=Rhot2 PE=2 SV=1
          Length = 622

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 169 VCGTFLDGLMSIN-STTCSIMSLHVCRLYDSGVKETGVSAEMIYKRFF 29
           +C    D L+  +  TTC +     C ++DS   ET V    IYKR++
Sbjct: 473 LCEVNADSLLDTSLDTTCDV----ACLMFDSSDPETFVQCATIYKRYY 516


>sp|O87627|NIFN_HERSE Nitrogenase iron-molybdenum cofactor
           biosynthesis protein nifN OS=Herbaspirillum seropedicae
           GN=nifN PE=3 SV=1
          Length = 443

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -3

Query: 251 MVGSCFALVHSGSSSANSFTEGLYCM*SMWDIFGRADVHQLDNLL---HYVPTCLSVIR 84
           + G C   + +G+S  + + + L  +   W+  GRAD  Q DNLL   H  P  +  +R
Sbjct: 126 LTGLCPHALTTGASQ-DGWAKALEALAGRWESRGRADARQADNLLAGCHLTPADIEEMR 183


>sp|Q7VDD5|COXX_PROMA Protoheme IX farnesyltransferase
           OS=Prochlorococcus marinus GN=ctaB PE=3 SV=1
          Length = 333

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 281 KGLFRVQSFIMVGSCFALVHSGSSSANSF-TEGLYCM*SMWDIFGRA 144
           KGLFR     M G C  LV S S+ A+ F  + +Y   +M  +F  A
Sbjct: 287 KGLFRWSILYMFGICLLLVVSRSTLADQFHNQAIYLFTNMGSVFSIA 333


>sp|Q7S9B7|REXO4_NEUCR RNA exonuclease 4 OS=Neurospora crassa
           GN=rex-4 PE=3 SV=1
          Length = 406

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 184 SIACKVCGTFLDGLMSINSTTCSIMSLHVCRLYDSGVKET 65
           SI C++ GT   G  S+ +  CSI+  H  ++YDS V+ T
Sbjct: 218 SIDCEMVGTGPSGATSVLAR-CSIVDFHGHQIYDSYVRPT 256


>sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Pichia
           stipitis GN=SPB4 PE=3 SV=2
          Length = 617

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
 Frame = -3

Query: 227 VHSGSSSANSFTEGLYCM*SMWDIFGRADVHQLDNLLH---------YVPTCLSVIRFRS 75
           V S S++ANS    L+    M  I     +  L  LLH         Y PTC SV  F S
Sbjct: 235 VKSKSTTANSAPSALHISYLM--IEPEKKITTLIKLLHDYRYKKCIVYFPTCTSVKHFYS 292

Query: 74  QRNRSVS*NDLQEIFSF 24
              + V+ ND  E F F
Sbjct: 293 IFQKIVNGNDNTESFKF 309


>sp|P37463|CITB_SALTY Citrate utilization protein B OS=Salmonella
           typhimurium GN=citB PE=4 SV=2
          Length = 379

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 155 FGRADVHQLDNLLHYVPTCLSVIRF 81
           FG+AD+H L NL H    CL   ++
Sbjct: 50  FGKADIHYLANLCHNCGACLHACQY 74

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916686|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_D06.
         (343 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******