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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916699
Clone id YMU001_000090_E08
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACTGGAAGAATTCGCGGCCGCGAATATGATGGTGGGTTATGAGGAGATTCATGGAAACT
TATAAAAAAATGATGCTTTTTGCATTAAACTTGATACTTATGGTGAGAATGGTAACATTG
CGAGTTATGGTGCCAAAATCTGAATTTGGAAAGTTGCAGTTGTTTATTTGGTTATGATAC
ATACAATTTGCAAAAAATCTAGCTCAAAAAAATGGATCTAATACTTGATGATACTTGTAT
GATAACTTTTGTATCTCATGAGGTTTCCATGAATATTCCTTTGACTCTTTACAGGTTTAA
TCTCTTCAAAATTAACCAAACACTGGTCTTATAAATCTACAACCTGCTTACTGGTTACTA
GATGGCTTTTTGGGTCTTGGATTTCTGGCATAGTCCCGATCTTTCTCTGGTTAGATCTTA
CTCTCATGAACTTGGGTGTGGTTGGAGTTAGCTGGATCTGGCTCTGGTTCTAAGTGGTAC
ATCATTGGCTCTGGCTTATACTGCTCTGGGCTG
■■Homology search results ■■ -
sp_hit_id O60806
Definition sp|O60806|TBX19_HUMAN T-box transcription factor TBX19 OS=Homo sapiens
Align length 40
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916699|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_E08.
         (486 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60806|TBX19_HUMAN T-box transcription factor TBX19 OS=Homo s...    31   3.4  
sp|Q1ZXC2|PABPA_DICDI Polyadenylate-binding protein 1-A OS=Dicty...    31   3.4  
sp|P79778|TBXT_CHICK T-box-containing protein TBXT OS=Gallus gal...    30   5.7  
sp|Q99ME7|TBX19_MOUSE T-box transcription factor TBX19 OS=Mus mu...    30   5.7  
sp|Q5XNS0|TBX19_CANFA T-box transcription factor TBX19 OS=Canis ...    30   5.7  
sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287...    29   9.9  
sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein DDB...    29   9.9  

>sp|O60806|TBX19_HUMAN T-box transcription factor TBX19 OS=Homo
           sapiens GN=TBX19 PE=1 SV=3
          Length = 448

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 149 HNQINNCNFPNSDFGTIT--RNVTILTISIKFNAKSIIFL 36
           H  + NC+FP + F  +T  +N  I  + IK+N  +  FL
Sbjct: 178 HRMVTNCSFPETQFIAVTAYQNEEITALKIKYNPFAKAFL 217


>sp|Q1ZXC2|PABPA_DICDI Polyadenylate-binding protein 1-A
           OS=Dictyostelium discoideum GN=pabp1A PE=3 SV=1
          Length = 814

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 105 HHNSQCYHSHHKYQV*CKKHHFFISFHESPHNPP 4
           HH+ Q  H HH++Q    +HH     H+  H  P
Sbjct: 123 HHHHQHQHQHHQHQHHQHQHHQHHQHHQHHHTSP 156


>sp|P79778|TBXT_CHICK T-box-containing protein TBXT OS=Gallus gallus
           GN=TBXT PE=2 SV=1
          Length = 397

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 149 HNQINNCNFPNSDFGTIT--RNVTILTISIKFNAKSIIFL 36
           H  + NC+FP + F  +T  +N  I  + IK+N  +  FL
Sbjct: 176 HRMVMNCSFPETQFIAVTAYQNEEITALKIKYNPFAKAFL 215


>sp|Q99ME7|TBX19_MOUSE T-box transcription factor TBX19 OS=Mus
           musculus GN=Tbx19 PE=2 SV=1
          Length = 446

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 149 HNQINNCNFPNSDFGTIT--RNVTILTISIKFNAKSIIFL 36
           H  + NC+FP + F  +T  +N  I  + IK+N  +  FL
Sbjct: 176 HRMVMNCSFPETQFIAVTAYQNEEITALKIKYNPFAKAFL 215


>sp|Q5XNS0|TBX19_CANFA T-box transcription factor TBX19 OS=Canis
           familiaris GN=TBX19 PE=2 SV=1
          Length = 445

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 149 HNQINNCNFPNSDFGTIT--RNVTILTISIKFNAKSIIFL 36
           H  + NC+FP + F  +T  +N  I  + IK+N  +  FL
Sbjct: 178 HRMVMNCSFPETQFIAVTAYQNEEITALKIKYNPFAKAFL 217


>sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287191
           OS=Dictyostelium discoideum GN=DDB_G0287191 PE=4 SV=1
          Length = 72

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -1

Query: 105 HHNSQCYHS---HHKYQV*CKKHHFFISFHESPHNPPS 1
           HH++  YHS   HH +      HH   S   SP +PPS
Sbjct: 21  HHHNYHYHSYPHHHHHHSHHHHHHHLPSSPPSPPSPPS 58


>sp|Q8MP30|Y7791_DICDI Uncharacterized histidine-rich protein
           DDB0167791 OS=Dictyostelium discoideum GN=DDB_G0274557
           PE=4 SV=1
          Length = 233

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 105 HHNSQCYHSHHKYQV*CKKHHFFISFHESPHNPP 4
           HH+   +H HH +      HH     H  PH+ P
Sbjct: 126 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHP 159
tr_hit_id Q7QB08
Definition tr|Q7QB08|Q7QB08_ANOGA AGAP004249-PA (Fragment) OS=Anopheles gambiae
Align length 35
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916699|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_E08.
         (486 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7QB08|Q7QB08_ANOGA AGAP004249-PA (Fragment) OS=Anopheles gam...    34   3.2  
tr|B6LT34|B6LT34_BRAFL Putative uncharacterized protein OS=Branc...    34   4.1  
tr|A7T6H4|A7T6H4_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   4.2  
tr|Q9RJV6|Q9RJV6_STRCO Putative binding-protein-dependent transp...    33   5.3  
tr|Q6HNF5|Q6HNF5_BACHK Oligopeptide ABC transporter, ATP-binding...    33   5.3  
tr|Q5WDD3|Q5WDD3_BACSK Oligopeptide ABC transporter ATP-binding ...    33   5.3  
tr|B5RPX6|B5RPX6_BORRA Exodeoxyribonuclease V, beta chain OS=Bor...    33   5.3  
tr|B5RMI0|B5RMI0_BORDL Exodeoxyribonuclease V, beta chain OS=Bor...    33   7.0  
tr|A9VET9|A9VET9_BACWK ABC transporter related OS=Bacillus weihe...    33   7.0  
tr|Q81V42|Q81V42_BACAN Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|Q73DI5|Q73DI5_BACC1 Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|Q63FY7|Q63FY7_BACCZ Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|A7GL95|A7GL95_BACCN ABC transporter-related protein OS=Bacill...    33   9.1  
tr|A0R9U5|A0R9U5_BACAH Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B7JQE4|B7JQE4_BACCE Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B7HVG5|B7HVG5_BACCE Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B3ZVB0|B3ZVB0_BACCE Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B3ZFC6|B3ZFC6_BACCE Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B3YYA0|B3YYA0_BACCE Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B3JAH0|B3JAH0_BACAN Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B1USI0|B1USI0_BACAN Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B1GNR8|B1GNR8_BACAN Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B1F3Z6|B1F3Z6_BACAN Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B0QLA7|B0QLA7_BACAN Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B0Q764|B0Q764_BACAN Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|B0AWW5|B0AWW5_BACAN Oligopeptide ABC transporter, ATP-binding...    33   9.1  
tr|Q869U8|Q869U8_DICDI Similar to Plasmodium falciparum (Isolate...    33   9.1  
tr|Q551L2|Q551L2_DICDI Putative uncharacterized protein OS=Dicty...    33   9.1  
tr|A5DY21|A5DY21_LODEL Putative uncharacterized protein OS=Lodde...    33   9.1  

>tr|Q7QB08|Q7QB08_ANOGA AGAP004249-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP004249 PE=4 SV=4
          Length = 1120

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 105 HHNSQCYHSHHKYQV*CKKHHFFISFHESPHNPPS 1
           HH+   YH HH +      HH     H +PH PPS
Sbjct: 389 HHHHHHYHPHHHHP----NHHHPHHLHHNPHGPPS 419


>tr|B6LT34|B6LT34_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_74208 PE=4 SV=1
          Length = 1009

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 482  PEQYKPEPMMYHLEPEPDPANSNHTQVHE-SKI*PEKDRD-YARNPRPKKP 336
            P+ Y PEP  Y  +PEPDP      +  +     P  +RD ++  P PK+P
Sbjct: 868  PDPYVPEPDPYPYQPEPDPYPYQPEEPEQPDPYDPYAERDRFSNEPEPKEP 918


>tr|A7T6H4|A7T6H4_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g7830 PE=4 SV=1
          Length = 82

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 156 YVS*PNKQLQLSKFRFWHHNSQCYHSHHKYQV*CKKHHFFISFHESPH 13
           Y S  +  L   K   +HH++  YH HH +   C  HH   + H   H
Sbjct: 11  YHSHCHHNLHHQKHYHYHHHNNHYHHHHHHHSFCHHHHHHHNHHHHHH 58


>tr|Q9RJV6|Q9RJV6_STRCO Putative binding-protein-dependent transport
           protein OS=Streptomyces coelicolor GN=SCO0354 PE=3 SV=1
          Length = 280

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 22/81 (27%), Positives = 40/81 (49%)
 Frame = +2

Query: 236 VSMNIPLTLYRFNLFKINQTLVL*IYNLLTGY*MAFWVLDFWHSPDLSLVRSYSHELGCG 415
           + M +P+ L   N FK  Q ++   ++   G     ++ D W++PD S+++ Y       
Sbjct: 21  LGMLVPMYLLVVNAFKSQQEILANPFSPSFGTATFQYLADAWNNPDFSILKGYG------ 74

Query: 416 WS*LDLALVLSGTSLALAYTA 478
              + +ALVL   +LA+A  A
Sbjct: 75  ---VTIALVLCVNALAMAVCA 92


>tr|Q6HNF5|Q6HNF5_BACHK Oligopeptide ABC transporter, ATP-binding
           protein OS=Bacillus thuringiensis subsp. konkukian
           GN=oppF PE=3 SV=1
          Length = 308

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -3

Query: 352 QDPKSHLVTSKQVVDL*DQCLVNFEEIKPVKSQRNIHGNLMRYKSYHTSIIKY 194
           QDP S L   K+V+D+  + L NFE++ P + +R +  +L +      SI KY
Sbjct: 98  QDPYSSLNPKKRVMDIIAEPLRNFEKLSPDEERRAVQEHLDKVGLNPESIYKY 150


>tr|Q5WDD3|Q5WDD3_BACSK Oligopeptide ABC transporter ATP-binding
           protein OS=Bacillus clausii (strain KSM-K16) GN=ABC3093
           PE=3 SV=1
          Length = 311

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -3

Query: 352 QDPKSHLVTSKQVVDL*DQCLVNFEEIKPVKSQRNIHGNLMRYKSYHTSIIKY 194
           QDP S L   K+V+D+  + L NF ++   + Q+N+   L +      SI+KY
Sbjct: 97  QDPYSSLNPKKRVLDIIAEPLRNFRKMTKAEEQKNVEELLEKVGLSRESIVKY 149


>tr|B5RPX6|B5RPX6_BORRA Exodeoxyribonuclease V, beta chain
           OS=Borrelia recurrentis (strain A1) GN=recB PE=4 SV=1
          Length = 1147

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -2

Query: 266 CKESKEYSWKPHEIQKLSYKYHQVLDPFF*ARFFANCMYHNQINNCNFPNSDFGTITRNV 87
           C+ SKE ++   E++K + K H+  +PFF  + F    Y   +  C     DF T+   +
Sbjct: 527 CRTSKEINFIDRELKKNNIKTHKTKEPFFKTKEFNEIFY---LVKCLSKKQDFKTLNYVL 583

Query: 86  TILTISI 66
           T   I++
Sbjct: 584 TSKMINL 590


>tr|B5RMI0|B5RMI0_BORDL Exodeoxyribonuclease V, beta chain
           OS=Borrelia duttonii (strain Ly) GN=recB PE=4 SV=1
          Length = 1147

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -2

Query: 266 CKESKEYSWKPHEIQKLSYKYHQVLDPFF*ARFFANCMYHNQINNCNFPNSDFGTITRNV 87
           C+ SKE ++   E++K + K H+  +PFF  + F    Y   +  C     DF T+   +
Sbjct: 527 CRTSKEINFIDRELKKNNIKTHKTKEPFFKTKEFNEIFY---LVKCLSRKQDFKTLNYVL 583

Query: 86  TILTISI 66
           T   I++
Sbjct: 584 TSKMINL 590


>tr|A9VET9|A9VET9_BACWK ABC transporter related OS=Bacillus
           weihenstephanensis (strain KBAB4) GN=BcerKBAB4_0573 PE=4
           SV=1
          Length = 308

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 352 QDPKSHLVTSKQVVDL*DQCLVNFEEIKPVKSQRNIHGNLMRYKSYHTSIIKY 194
           QDP S L   K+V+D+  + L NFE++ P + +R +   L +      SI KY
Sbjct: 98  QDPYSSLNPKKRVIDIIAEPLRNFEKLSPDEERRAVQEYLDKVGLNPESIYKY 150


>tr|Q81V42|Q81V42_BACAN Oligopeptide ABC transporter, ATP-binding
           protein OS=Bacillus anthracis GN=BAS0626 PE=3 SV=1
          Length = 308

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 352 QDPKSHLVTSKQVVDL*DQCLVNFEEIKPVKSQRNIHGNLMRYKSYHTSIIKY 194
           QDP S L   K+V+D+  + L NFE++ P + +R +   L +      SI KY
Sbjct: 98  QDPYSSLNPKKRVMDIIAEPLRNFEKLSPDEERRAVQDYLDKVGLNPESIYKY 150