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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916710
Clone id YMU001_000090_F08
Library
Length 239
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCATGAGGCCTGCTCCATTTAAAATCATAATGAAGAAGTCAAAGGAGGGATTCCCCTAG
AAGGGGGCTCTTCACCCAAGGCAAAAGAGCATCCCTCCAAGAGAACCCACCCAAAATATA
ATCAAGGTATGCAATTCCATGAGGAAGCTTACCCATTTAAAATCATAATGTACATTTGGG
GGTGTACGCATGCTTGAGTGTGTGAGAAAAGAGGCCGCTCGGTACTCGTGGCCGTCCGC
■■Homology search results ■■ -
sp_hit_id A6LHS1
Definition sp|A6LHS1|IF2_PARD8 Translation initiation factor IF-2 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
Align length 36
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916710|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_F08.
         (239 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6LHS1|IF2_PARD8 Translation initiation factor IF-2 OS=Paraba...    29   6.4  
sp|Q2Z1W2|CENPU_CHICK Centromere protein U OS=Gallus gallus GN=M...    29   8.4  

>sp|A6LHS1|IF2_PARD8 Translation initiation factor IF-2
           OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
           20701 / NCTC 11152) GN=infB PE=3 SV=1
          Length = 973

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 39  VKGGIPLEGGSSPKAKEHPSKRTHPKYNQGMQFHEE 146
           +KG I L+GG   K +E P  +  PK  +  +  EE
Sbjct: 95  MKGHIDLDGGQHKKQQEEPKAKEEPKVKEEPKVKEE 130


>sp|Q2Z1W2|CENPU_CHICK Centromere protein U OS=Gallus gallus
           GN=MLF1IP PE=1 SV=1
          Length = 345

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 61  KGALHPRQKSIPPREPTQNIIKVCNSMRKLTHL 159
           KG  HPR+K +PP EP  + I     + +L  L
Sbjct: 20  KGRSHPRRKFLPPEEPDVSRISKVAGVNQLEEL 52
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916710|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_F08.
         (239 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******