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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916728
Clone id YMU001_000090_H02
Library
Length 611
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGAACACCCCGGATAACTGAAAGAACAGTTGTGGTTTTATTGTCATTACATACCCATCAC
AAGGACATTTTGTAACCTCTGTCATGCAGGTCTTTGTCCTATGCAGAAAAATGCAAGACA
TTTTGTAGTTACCACGTCCGCCCCTTGCTTGGTTCAGAGATACCACCCAACCATATCACC
CTTCAACAGGGGACCATTGAGGAGTTTAGCAGTAAAGGCCAAACCTCTATTGTGATCAAC
CACTTCCCCTATGCTCGCAAACAACCCCACCTTGACACTGAGCATCCAAAATCATATGCA
CGCACTATGCAATGAAGTAATGCTGTTATCTGCCAGGGAATTCACAAACTTTCTTTTAGA
AGACCTTTCATGTCCTCAGCAACTGAGTTGAAGCACTTTGACAAATTCCCAAAATGTTGA
TGTTCCAGATTGGCCCTTCCATTTCTTCCAATGGCAATATCAGCATCGCTTAGCCTTTCA
TGGGGCAACGTGAGTGAAATGTAACACTGTCCATGCCACCCATAAGGACAGTTATCTCTA
GATTAGATCTCAAAACCACAGGTCCATATGCAGTACAAACTATCAAAGCTCATACGTAAT
ATGTACTCGAG
■■Homology search results ■■ -
sp_hit_id Q9HBW1
Definition sp|Q9HBW1|LRRC4_HUMAN Leucine-rich repeat-containing protein 4 OS=Homo sapiens
Align length 117
Score (bit) 32.3
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916728|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_H02.
         (611 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HBW1|LRRC4_HUMAN Leucine-rich repeat-containing protein 4 O...    32   2.0  
sp|A5IHA2|ARLY_LEGPC Argininosuccinate lyase OS=Legionella pneum...    31   4.4  
sp|Q5X7P8|ARLY_LEGPA Argininosuccinate lyase OS=Legionella pneum...    31   4.4  
sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropica...    31   5.7  
sp|A0JNH9|APLF_BOVIN Aprataxin and PNK-like factor OS=Bos taurus...    30   7.5  
sp|A7HC45|MUTL_ANADF DNA mismatch repair protein mutL OS=Anaerom...    30   9.7  
sp|Q5WZ49|ARLY_LEGPL Argininosuccinate lyase OS=Legionella pneum...    30   9.7  
sp|Q5ZY77|ARLY_LEGPH Argininosuccinate lyase OS=Legionella pneum...    30   9.7  

>sp|Q9HBW1|LRRC4_HUMAN Leucine-rich repeat-containing protein 4
           OS=Homo sapiens GN=LRRC4 PE=1 SV=2
          Length = 653

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
 Frame = +2

Query: 32  WFYCHYIPITRTFCNLCHAGLCPMQKNARHFV------VTTSAPCLVQRYHPTISPFNRG 193
           W+   YIP   T C  CHA   PM    R+ V         SAP ++    P     + G
Sbjct: 313 WWLREYIPTNSTCCGRCHA---PMHMRGRYLVEVDQASFQCSAPFIMDA--PRDLNISEG 367

Query: 194 PLRSLAVKAKPLL*STTSPMLANNPTLTLSIQNHMHALCNEVMLLSAREFTNFLLED 364
            +  L  +  P+  S+   +L N   L+ + ++   ++ N+  L     F++ LL D
Sbjct: 368 RMAELKCRTPPM--SSVKWLLPNGTVLSHASRHPRISVLNDGTL----NFSHVLLSD 418


>sp|A5IHA2|ARLY_LEGPC Argininosuccinate lyase OS=Legionella
           pneumophila (strain Corby) GN=argH PE=3 SV=1
          Length = 411

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 284 IQNHMHALCNEVMLLSAREFTNFLLEDLSCPQQLS*STLTNSQNVDVPD 430
           I  H+  LC +++L S +EF   +L+D         S + N +N DVP+
Sbjct: 247 IMMHLSRLCEDLILWSTQEFNFVILDDAFATGS---SLMPNKKNPDVPE 292


>sp|Q5X7P8|ARLY_LEGPA Argininosuccinate lyase OS=Legionella
           pneumophila (strain Paris) GN=argH PE=3 SV=1
          Length = 411

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 284 IQNHMHALCNEVMLLSAREFTNFLLEDLSCPQQLS*STLTNSQNVDVPD 430
           I  H+  LC +++L S +EF   +L+D         S + N +N DVP+
Sbjct: 247 IMMHLSRLCEDLILWSTQEFNFVILDDAFATGS---SLMPNKKNPDVPE 292


>sp|Q0IJ20|RN145_XENTR RING finger protein 145 OS=Xenopus tropicalis
           GN=rnf145 PE=2 SV=1
          Length = 695

 Score = 30.8 bits (68), Expect = 5.7
 Identities = 27/105 (25%), Positives = 41/105 (39%)
 Frame = +2

Query: 5   HPG*LKEQLWFYCHYIPITRTFCNLCHAGLCPMQKNARHFVVTTSAPCLVQRYHPTISPF 184
           HPG LK+  W Y       +  C LCH  L  + + A     +++ P  V     T  P 
Sbjct: 557 HPGCLKK--WLY------VQETCPLCHCQLKSLSQQATGESGSSTNP--VSEQSATNPPL 606

Query: 185 NRGPLRSLAVKAKPLL*STTSPMLANNPTLTLSIQNHMHALCNEV 319
             GP+    V  +PL    T   L   PT+ + +   +     E+
Sbjct: 607 --GPVSRAEVTTEPLAAVPTRSALEQEPTMDIKVSGSVEKRIGEL 649


>sp|A0JNH9|APLF_BOVIN Aprataxin and PNK-like factor OS=Bos taurus
           GN=APLF PE=2 SV=1
          Length = 485

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 22/94 (23%)
 Frame = -1

Query: 563 TCGFEI*SRDNCPYG--------WHGQCYISLTLPHERLSDADIAIGRNGRANLEHQHFG 408
           TC  E   R  CPYG         H   Y   T P   +SD D  +G+    NL      
Sbjct: 384 TCQDEADDRPECPYGASCYRKNPQHKIEYRHSTFPVRSISDEDDNVGQPNEYNLNDSFID 443

Query: 407 NLSKCFNSV--------------AEDMKGLLKES 348
           +  + +                  EDM+GLLKE+
Sbjct: 444 DEEEEYEPTDEDSDWEPEKEDLEKEDMEGLLKEA 477


>sp|A7HC45|MUTL_ANADF DNA mismatch repair protein mutL
           OS=Anaeromyxobacter sp. (strain Fw109-5) GN=mutL PE=3
           SV=1
          Length = 601

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 538 EITVLMGGMDSVTFHSRCPMKG*AMLILPLEEME 437
           E   L+ G+D++ F +RCP     +  LPL E+E
Sbjct: 562 EARALLDGLDAIDFKARCPHGRPVVFELPLAELE 595


>sp|Q5WZ49|ARLY_LEGPL Argininosuccinate lyase OS=Legionella
           pneumophila (strain Lens) GN=argH PE=3 SV=1
          Length = 411

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 284 IQNHMHALCNEVMLLSAREFTNFLLEDLSCPQQLS*STLTNSQNVDVPD 430
           I  H+  LC +++L S +EF    L+D         S + N +N DVP+
Sbjct: 247 IMMHLSRLCEDLILWSTQEFNFVTLDDAFATGS---SLMPNKKNPDVPE 292


>sp|Q5ZY77|ARLY_LEGPH Argininosuccinate lyase OS=Legionella
           pneumophila subsp. pneumophila (strain Philadelphia 1 /
           ATCC 33152 / DSM 7513) GN=argH PE=3 SV=2
          Length = 411

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 284 IQNHMHALCNEVMLLSAREFTNFLLEDLSCPQQLS*STLTNSQNVDVPD 430
           I  H+  LC +++L S +EF    L+D         S + N +N DVP+
Sbjct: 247 IMMHLSRLCEDLILWSTQEFNFVTLDDAFATGS---SLMPNKKNPDVPE 292
tr_hit_id B7YQF4
Definition tr|B7YQF4|B7YQF4_VARPD ABC transporter related protein OS=Variovorax paradoxus S110
Align length 62
Score (bit) 34.3
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916728|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_H02.
         (611 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7YQF4|B7YQF4_VARPD ABC transporter related protein OS=Variov...    34   5.8  
tr|Q6C859|Q6C859_YARLI Serine hydroxymethyltransferase OS=Yarrow...    34   5.8  
tr|A7HCT3|A7HCT3_ANADF Cell surface receptor IPT/TIG domain prot...    34   7.6  
tr|B6NMF1|B6NMF1_BRAFL Putative uncharacterized protein OS=Branc...    34   7.6  
tr|A4HUR2|A4HUR2_LEIIN Chromosome 10 (Fragment) OS=Leishmania in...    33   10.0 

>tr|B7YQF4|B7YQF4_VARPD ABC transporter related protein
           OS=Variovorax paradoxus S110 GN=VaparDRAFT_3329 PE=4
           SV=1
          Length = 613

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -3

Query: 372 HERSSKRKFVNSLADNSITSLHSACI*FWMLSVKVGLFASIGEVVDHNRGLAFTAKLLNG 193
           ++R   R  V++LA      L   CI FW+ S +  L  + G ++DH    A    +LN 
Sbjct: 63  YDRVLSRSGVSTLAALVCGILFFLCIEFWLRSGRSRLLRNAGAIIDHGVSGALLHSMLNR 122

Query: 192 PL 187
           PL
Sbjct: 123 PL 124


>tr|Q6C859|Q6C859_YARLI Serine hydroxymethyltransferase OS=Yarrowia
           lipolytica GN=YALI0D22484g PE=3 SV=1
          Length = 481

 Score = 34.3 bits (77), Expect = 5.8
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 152 VQRYHPTISPFNRGPLRSLAVKAKPLL*STTSPMLANNPTLTLSIQNHMHALCNEVMLLS 331
           +QR+     P NRG LR+ A KA P    T   + A++P +   I+         + L+ 
Sbjct: 1   MQRFTRLSRPLNRGLLRAYATKASPDTQMTQQTLYASDPEIADIIKKETDRQIGSITLIP 60

Query: 332 AREFTN 349
           +  FT+
Sbjct: 61  SENFTS 66


>tr|A7HCT3|A7HCT3_ANADF Cell surface receptor IPT/TIG domain protein
             OS=Anaeromyxobacter sp. (strain Fw109-5) GN=Anae109_2327
             PE=4 SV=1
          Length = 12684

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 17/72 (23%), Positives = 36/72 (50%)
 Frame = +1

Query: 82    SCRSLSYAEKCKTFCSYHVRPLLGSEIPPNHITLQQGTIEEFSSKGQTSIVINHFPYARK 261
             SCR+    + C++FC+ +V P  G      ++ +    ++ F + G +S   +++PYA +
Sbjct: 10048 SCRTSYSNDDCQSFCAEYVVPASG------NVLVSAEALDVFGASGTSS--YSYYPYANQ 10099

Query: 262   QPHLDTEHPKSY 297
              P +     + Y
Sbjct: 10100 PPSVSMSERRDY 10111


>tr|B6NMF1|B6NMF1_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_96868 PE=4 SV=1
          Length = 3458

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +2

Query: 86   AGLCPMQKNARHFVVTTSAPCLVQRYHP-TISPFNRGPLRSLAVKAKPLL*STTSPMLAN 262
            +G CP  +  R F   +    L QR HP T+  F RG        +  L   T SP+LA 
Sbjct: 1319 SGGCPRAEVLRSFQCLSIFKHLTQRDHPPTLWIFTRG-------SSSVLEQDTVSPLLAG 1371

Query: 263  NPTLTLSI-QNHMHALCNEVMLLSAREFTNFLLEDLS 370
              +L LSI Q H       V L   + F++  +E LS
Sbjct: 1372 TSSLCLSISQEHPQFKVKAVDLTPQQNFSDAAVEVLS 1408


>tr|A4HUR2|A4HUR2_LEIIN Chromosome 10 (Fragment) OS=Leishmania
           infantum GN=LinJ10.1830 PE=4 SV=1
          Length = 1224

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = +1

Query: 166 PNHITLQQGTIEEFSSKGQTSIVINHFPYARKQPHLDTEHPKSYARTMQ*SNAVICQGIH 345
           P  ++   G   E   +G  ++   H   A K P LD  H  + + ++  S  V    +H
Sbjct: 215 PQRVSAAGGGRLELRMRGLVALPCLHLSAAPKSPSLDARHESTTSSSVHGSGDVAAGRLH 274

Query: 346 KLSFRRPFMSS 378
            +SFR+  +SS
Sbjct: 275 AVSFRQNAISS 285