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NBDC - LSDB Archive
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BP916730
Clone id YMU001_000090_H05
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCTAAGTAGAGCAAGGCATTACTTAGGTGATTGCACCTGGAGAGATGGCCTTTTCGCATT
GCGTATGGTGAAAACATATGCAAAATTCCACGGGCCTACAAGTTCCATGCATAGGTGATT
GCATTTGAAGCGGGGCCCTTTTTGCTTCACATTTAGTGAACATCCTGGAATGAACTCGCT
CCAAGAGACGCCCTGGGCATAGAGCTCATCCAGGGCCCTTCCTTTCAATTGGCCCGCGCT
AGCTGGTATACATTTGTGCACTCCAGTGACCAATCCAGCCCTTGCAATCCCTGTTGCCCC
TAGCCTCTGTTCAGTCCCTATTCTGCAACCCCAATGTTGGCCCTCAAACCTGTCCCCACT
TCCTACTAGAAATGCCATTCAACATGGCCCTCATTCCTCACAATCGGCCCTTA
■■Homology search results ■■ -
sp_hit_id Q7TPN9
Definition sp|Q7TPN9|PRR14_MOUSE Proline-rich protein 14 OS=Mus musculus
Align length 99
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916730|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_H05.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TPN9|PRR14_MOUSE Proline-rich protein 14 OS=Mus musculus GN...    34   0.20 
sp|A7SDW5|EIF3L_NEMVE Eukaryotic translation initiation factor 3...    32   0.76 
sp|P23207|TPB5_BPT5 Tail protein PB5 OS=Enterobacteria phage T5 ...    31   1.7  
sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Dani...    30   2.9  
sp|Q9Y6N6|LAMC3_HUMAN Laminin subunit gamma-3 OS=Homo sapiens GN...    30   3.8  
sp|A4WFX7|UBID_ENT38 3-octaprenyl-4-hydroxybenzoate carboxy-lyas...    29   6.5  
sp|Q6CAP3|IML1_YARLI Vacuolar membrane-associated protein IML1 O...    29   6.5  
sp|P15709|ST2A1_RAT Bile salt sulfotransferase OS=Rattus norvegi...    29   8.4  

>sp|Q7TPN9|PRR14_MOUSE Proline-rich protein 14 OS=Mus musculus
           GN=Prr14 PE=2 SV=1
          Length = 612

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +2

Query: 74  TYAKFHGPTSSMHR*-LHLKRGPFCFTFSEHPGMNSLQET--PWA*SSSRALPFNWPALA 244
           T+    GP    HR  L L+  P   T S HP    + +   P    S    PF    L 
Sbjct: 184 TFRSLKGPGKHCHRRGLDLEARP-TLTLSLHPRAEPVTKAGQPMPTPSDLEPPFQLSTLP 242

Query: 245 GIHLCTPVTNPALAIPVAPSLCSVPILQPQCWPSNLSPL 361
                +PV +PAL  PV P+  S  +L+P+  P  L+PL
Sbjct: 243 ADPPESPVPDPALETPVIPT--SSSLLRPRLSPWGLAPL 279


>sp|A7SDW5|EIF3L_NEMVE Eukaryotic translation initiation factor 3
           subunit L OS=Nematostella vectensis GN=v1g169424 PE=3
           SV=1
          Length = 525

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = -2

Query: 202 LCPGRLLERVHSRMFTKCEAKRAPLQMQSPMHGTCRPVEFCICFHHTQCEKAISP 38
           LCP +L E VHS++  KC  K     MQ    G  +  E C  +    C K +SP
Sbjct: 342 LCPQQLDENVHSQLREKCTEK-----MQKLQKGDLQMFEECFSY---SCPKFVSP 388


>sp|P23207|TPB5_BPT5 Tail protein PB5 OS=Enterobacteria phage T5
           GN=oad PE=4 SV=1
          Length = 640

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = -3

Query: 357 GDRFEGQHWGCRIGTEQ-RLGATGIARAGLVTGVHKCIPASAGQLKGRALDELYAQGVSW 181
           G+R + +  GC +  +    G +GIA  GL T      P+    +KG  +  L+A  VS 
Sbjct: 369 GNRADFRDVGCNLSKDSPSTGISGIATFGLPTTESNNAPS----IKGGNVGGLHANVVSI 424

Query: 180 SEFIPGCSLNVKQKGPRFKCNH 115
             F+P  S  V    P+   N+
Sbjct: 425 YNFLPSTSWYVSSNPPKIGNNY 446


>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio
           rerio GN=rxrgb PE=2 SV=1
          Length = 452

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
 Frame = +2

Query: 119 LHLKRGPFCFTFSEHPGMNSLQETPWA*SSSRALPFNWPALAG--------IHLCTP-VT 271
           LHL   P   + S+ P M+S+   P   SSSR LP     L            + TP ++
Sbjct: 8   LHLHSSPLNSSPSQPPVMSSMVGHPSVISSSRPLPSPMSTLGSSMNGLPSPYSVITPSLS 67

Query: 272 NPALAIPVAPSLCSVPILQPQ 334
           +P++++P  PS+    +  PQ
Sbjct: 68  SPSISLPSTPSMGFNTLNSPQ 88


>sp|Q9Y6N6|LAMC3_HUMAN Laminin subunit gamma-3 OS=Homo sapiens
           GN=LAMC3 PE=2 SV=2
          Length = 1587

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = -2

Query: 109 HGTCRP-VEFCICFHHTQ---CEKAISPG 35
           HGTC P    C+C HHT+   CE+ + PG
Sbjct: 712 HGTCDPNTGICVCSHHTEGPSCERCL-PG 739


>sp|A4WFX7|UBID_ENT38 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
           OS=Enterobacter sp. (strain 638) GN=ubiD PE=3 SV=2
          Length = 497

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 296 APSLCSVPILQPQCWPSNLSPLPTRN-AIQHGPHSSQSAL 412
           A  L  +PI+Q  CWP + +PL T    +  GPH  +  L
Sbjct: 136 AVDLTRIPIMQ--CWPEDAAPLITWGLTVTRGPHKERQNL 173


>sp|Q6CAP3|IML1_YARLI Vacuolar membrane-associated protein IML1
           OS=Yarrowia lipolytica GN=IML1 PE=3 SV=1
          Length = 1547

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 290 PVAPSLCSVPILQPQCWPSNLSPLPTRNAIQHGP 391
           P+APSL   P L+P+   S LS  PT N I   P
Sbjct: 592 PIAPSLPFAPNLKPKKSTSTLSQSPTYNRIAATP 625


>sp|P15709|ST2A1_RAT Bile salt sulfotransferase OS=Rattus norvegicus
           GN=St2a1 PE=2 SV=3
          Length = 284

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 183 WSEFIPGCSLNVKQKGPRFKCNHLCMELVGPWNFA----YVFTIRNAK 52
           W E   G  + +K+KGPR   +HL M L     F+     ++ IRN +
Sbjct: 76  WIETDVGYDILIKKKGPRLMTSHLPMHLFSKSLFSSKAKVIYLIRNPR 123
tr_hit_id A2R9Y8
Definition tr|A2R9Y8|A2R9Y8_ASPNC Similarity to hypothetical esterase SCD10.24 - Streptomyces coelicolor OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
Align length 45
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916730|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_H05.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2R9Y8|A2R9Y8_ASPNC Similarity to hypothetical esterase SCD10...    35   1.4  
tr|Q16VX8|Q16VX8_AEDAE DNA-binding protein smubp-2 OS=Aedes aegy...    35   1.9  
tr|Q5K9E1|Q5K9E1_CRYNE Putative uncharacterized protein OS=Crypt...    34   3.2  
tr|Q55K59|Q55K59_CRYNE Putative uncharacterized protein OS=Crypt...    34   3.2  
tr|A4I1M4|A4I1M4_LEIIN Putative uncharacterized protein OS=Leish...    34   4.2  
tr|Q20VT4|Q20VT4_9INFA Hemagglutinin OS=Influenza A virus (A/mal...    33   7.1  
tr|Q20VF7|Q20VF7_9INFA Hemagglutinin OS=Influenza A virus (A/mal...    33   7.1  
tr|Q0A4C7|Q0A4C7_9INFA Hemagglutinin OS=Influenza A virus (A/san...    33   7.1  
tr|A7CVQ7|A7CVQ7_9BACT Putative uncharacterized protein OS=Opitu...    33   7.1  
tr|Q89SC5|Q89SC5_BRAJA Blr2477 protein OS=Bradyrhizobium japonic...    33   9.3  
tr|B1Z6I4|B1Z6I4_BURA4 CblD family pilus biogenesis initiator pr...    33   9.3  
tr|Q6WLF4|Q6WLF4_9BACT Putative uncharacterized protein OS=uncul...    33   9.3  
tr|B6KRW0|B6KRW0_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.3  
tr|B3MWJ6|B3MWJ6_DROAN GF22506 OS=Drosophila ananassae GN=GF2250...    33   9.3  

>tr|A2R9Y8|A2R9Y8_ASPNC Similarity to hypothetical esterase SCD10.24
           - Streptomyces coelicolor OS=Aspergillus niger (strain
           CBS 513.88 / FGSC A1513) GN=An18g00690 PE=4 SV=1
          Length = 297

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 269 TNPALAIPVAPSLCSVPILQPQCWPSNLSPLPTRNAIQHGPHSSQ 403
           T P LA+  AP +  +  L   CW SN++P PT   +    HS +
Sbjct: 99  TKPTLAVTKAPGIPLLQALSSVCWDSNMAPFPTIVFVPGAWHSPE 143


>tr|Q16VX8|Q16VX8_AEDAE DNA-binding protein smubp-2 OS=Aedes aegypti
           GN=AAEL009411 PE=4 SV=1
          Length = 638

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
 Frame = -3

Query: 366 VGSGDRFEGQHWGCRIGTEQRLGATGIARAGLVTGVHKCIPASAGQLKGRALDELYAQGV 187
           VGS + F+G+     I T  R GATG+     V  ++  +  +   L      E   Q  
Sbjct: 521 VGSVEAFQGREKPIMILTTVRSGATGVGFLSNVKRLNVALTRAKALLIVIGNPETLQQDP 580

Query: 186 SWSEFIPGCSLNVKQKGPRFKCN---HLCMELVGPWNFAYVFTIRN 58
           +W EFI  C  N   +G +F+ +   H+  EL  P   AY+  I++
Sbjct: 581 NWFEFIRYCYDNGAIRGVKFELDEKRHMVKEL--PAKDAYMTMIQD 624


>tr|Q5K9E1|Q5K9E1_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNK02260 PE=4 SV=1
          Length = 334

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 251 HLCTPVTNPALAIPVAPSLCSVPILQPQCWP--SNLSPLPTRNAIQHGPHSS 400
           HL TP+T+PA A   APS  + P   P   P  SN +PL + + I++ P SS
Sbjct: 122 HLATPITHPAQA---APSSAAYPFPTPLPVPHASNAAPLMSSSPIRNQPPSS 170


>tr|Q55K59|Q55K59_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBK1270 PE=4 SV=1
          Length = 334

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 251 HLCTPVTNPALAIPVAPSLCSVPILQPQCWP--SNLSPLPTRNAIQHGPHSS 400
           HL TP+T+PA A   APS  + P   P   P  SN +PL + + I++ P SS
Sbjct: 122 HLATPITHPAQA---APSSAAYPFPTPLPIPHASNAAPLMSSSPIRNQPPSS 170


>tr|A4I1M4|A4I1M4_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ25.1850 PE=4 SV=1
          Length = 501

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 254 LCTPVTNPALAIPVAPSLCSVPILQPQCWPSNLSPLPTRNAIQHGPH 394
           + +PV++PAL    + SL ++P+   +CWP+        +A QH PH
Sbjct: 304 VASPVSSPALPPQQSQSLAALPLQPLRCWPA--------HAAQHPPH 342


>tr|Q20VT4|Q20VT4_9INFA Hemagglutinin OS=Influenza A virus
           (A/mallard duck/ALB/761/1978(H6N8)) GN=HA PE=3 SV=1
          Length = 566

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 37/106 (34%), Positives = 45/106 (42%)
 Frame = -3

Query: 369 LVGSGDRFEGQHWGCRIGTEQRLGATGIARAGLVTGVHKCIPASAGQLKGRALDELYAQG 190
           L GSGDR+       R+GTE    A G   A          PA  GQ +GR   + Y   
Sbjct: 207 LYGSGDRY------VRMGTESMNFAKGPEIAAR--------PAVNGQ-RGRI--DYY--- 246

Query: 189 VSWSEFIPGCSLNVKQKGPRFKCNHLCMELVGPWNFAYVFTIRNAK 52
             WS   PG +LNV+  G           L+ PW +AY FT  N K
Sbjct: 247 --WSVLKPGETLNVESNG----------NLIAPW-YAYKFTSSNNK 279


>tr|Q20VF7|Q20VF7_9INFA Hemagglutinin OS=Influenza A virus
           (A/mallard duck/ALB/730/1981(H6N1)) GN=HA PE=3 SV=1
          Length = 566

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 37/106 (34%), Positives = 45/106 (42%)
 Frame = -3

Query: 369 LVGSGDRFEGQHWGCRIGTEQRLGATGIARAGLVTGVHKCIPASAGQLKGRALDELYAQG 190
           L GSGDR+       R+GTE    A G   A          PA  GQ +GR   + Y   
Sbjct: 207 LYGSGDRY------VRMGTESMNFAKGPEIAAR--------PAVNGQ-RGRI--DYY--- 246

Query: 189 VSWSEFIPGCSLNVKQKGPRFKCNHLCMELVGPWNFAYVFTIRNAK 52
             WS   PG +LNV+  G           L+ PW +AY FT  N K
Sbjct: 247 --WSMLKPGETLNVESNG----------NLIAPW-YAYKFTSSNNK 279


>tr|Q0A4C7|Q0A4C7_9INFA Hemagglutinin OS=Influenza A virus
           (A/sanderling/Delaware/1258/1986(H6N6)) GN=HA PE=3 SV=1
          Length = 566

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 37/106 (34%), Positives = 45/106 (42%)
 Frame = -3

Query: 369 LVGSGDRFEGQHWGCRIGTEQRLGATGIARAGLVTGVHKCIPASAGQLKGRALDELYAQG 190
           L GSGDR+       R+GTE    A G   A          PA  GQ +GR   + Y   
Sbjct: 207 LYGSGDRY------VRMGTESMNFAKGPEIAAR--------PAVNGQ-RGRI--DYY--- 246

Query: 189 VSWSEFIPGCSLNVKQKGPRFKCNHLCMELVGPWNFAYVFTIRNAK 52
             WS   PG +LNV+  G           L+ PW +AY FT  N K
Sbjct: 247 --WSVLKPGETLNVESNG----------NLIAPW-YAYKFTSSNNK 279


>tr|A7CVQ7|A7CVQ7_9BACT Putative uncharacterized protein
           OS=Opitutaceae bacterium TAV2 GN=ObacDRAFT_1123 PE=4
           SV=1
          Length = 553

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +2

Query: 212 RALPFNWPALAGIHLCTPVTNPALAIPVAPSLCSVPILQPQCWPSNL 352
           RALP NWPAL  I L        L  P+ P   S   LQ Q W ++L
Sbjct: 131 RALPLNWPALVAIALW------PLCAPIPPGTYSRLTLQLQFWITDL 171


>tr|Q89SC5|Q89SC5_BRAJA Blr2477 protein OS=Bradyrhizobium japonicum
           GN=blr2477 PE=4 SV=1
          Length = 284

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 339 QHWGCRIGTEQRLGATGIARAGLVTGVHKCI 247
           QH GC  G+E+RL   G +R GL T +H C+
Sbjct: 130 QHGGCAGGSEKRL--MGRSRGGLTTKIHACV 158