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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916735
Clone id YMU001_000090_H10
Library
Length 435
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000090_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAATGCTGGGAGAACTATAGGTCATTGGCAGGAGACTTCGATTCGCTA
AGACAGCACCTCATCCTGATCCACAAGGAAAGGTTCCACATGGTGTTGTTAGGTACTCTT
TGGGAAGAAGAGATCGACTCTTAACCATGCATGCACGCTTTTATGGCATGCTCTCCTTTT
CTTCCTTCTTTAAACGTATTCTTATCAAAAAGCGGCTTTAGCCTTTTACACAAGAACCCC
CTATCTTTCACGAGTCAAGCTTATTACTAGTTCTGTTAAAGAGCCTTACACCCTGTATGG
ATAGAGCAGATTGTTTCGCACTACAAACAATTTAGGGCGTACTACAGGTGGCTGAACGGG
CGCCCTACTAGACCAACCCACTATAATAATACCATAAACCCCTAAGGAAGATATAGCAAA
TGGATGGAATATACC
■■Homology search results ■■ -
sp_hit_id Q01148
Definition sp|Q01148|NU1M_WHEAT NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum
Align length 25
Score (bit) 40.8
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916735|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_H10.
         (435 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01148|NU1M_WHEAT NADH-ubiquinone oxidoreductase chain 1 OS=T...    41   0.002
sp|Q01300|NU1M_PETHY NADH-ubiquinone oxidoreductase chain 1 OS=P...    41   0.002
sp|P31839|NU1M_OENBE NADH-ubiquinone oxidoreductase chain 1 OS=O...    41   0.002
sp|P92558|NU1M_ARATH NADH-ubiquinone oxidoreductase chain 1 OS=A...    41   0.002
sp|Q0BSK9|NUOH_GRABC NADH-quinone oxidoreductase subunit H OS=Gr...    40   0.006
sp|Q73IK1|NUOH_WOLPM NADH-quinone oxidoreductase subunit H OS=Wo...    39   0.009
sp|A7HY42|NUOH_PARL1 NADH-quinone oxidoreductase subunit H OS=Pa...    39   0.009
sp|Q2W3J1|NUOH_MAGMM NADH-quinone oxidoreductase subunit H OS=Ma...    39   0.009
sp|Q5HB99|NUOH_EHRRW NADH-quinone oxidoreductase subunit H OS=Eh...    39   0.009
sp|Q5FGW5|NUOH_EHRRG NADH-quinone oxidoreductase subunit H OS=Eh...    39   0.009
sp|Q2GGK6|NUOH_EHRCR NADH-quinone oxidoreductase subunit H OS=Eh...    39   0.009
sp|Q3YS40|NUOH_EHRCJ NADH-quinone oxidoreductase subunit H OS=Eh...    39   0.009
sp|Q5GSR1|NUOH_WOLTR NADH-quinone oxidoreductase subunit H OS=Wo...    39   0.012
sp|Q2G5Z3|NUOH_NOVAD NADH-quinone oxidoreductase subunit H OS=No...    38   0.016
sp|Q0APY3|NUOH_MARMM NADH-quinone oxidoreductase subunit H OS=Ma...    38   0.016
sp|P26845|NU1M_MARPO NADH-ubiquinone oxidoreductase chain 1 OS=M...    38   0.016
sp|Q1QL92|NUOH_NITHX NADH-quinone oxidoreductase subunit H OS=Ni...    38   0.021
sp|Q5WT27|NUOH_LEGPL NADH-quinone oxidoreductase subunit H OS=Le...    38   0.021
sp|Q5ZRU5|NUOH_LEGPH NADH-quinone oxidoreductase subunit H OS=Le...    38   0.021
sp|A5IHV6|NUOH_LEGPC NADH-quinone oxidoreductase subunit H OS=Le...    38   0.021
sp|Q5X1B4|NUOH_LEGPA NADH-quinone oxidoreductase subunit H OS=Le...    38   0.021
sp|Q0C1D7|NUOH_HYPNA NADH-quinone oxidoreductase subunit H OS=Hy...    38   0.021
sp|Q4FM84|NUOH_PELUB NADH-quinone oxidoreductase subunit H OS=Pe...    37   0.028
sp|P48899|NU1M_CYACA NADH-ubiquinone oxidoreductase chain 1 OS=C...    37   0.028
sp|Q2RU33|NUOH_RHORT NADH-quinone oxidoreductase subunit H OS=Rh...    37   0.036
sp|Q8F7Q5|NUOH_LEPIN NADH-quinone oxidoreductase subunit H OS=Le...    37   0.047
sp|Q72NT2|NUOH_LEPIC NADH-quinone oxidoreductase subunit H OS=Le...    37   0.047
sp|Q04YB0|NUOH_LEPBL NADH-quinone oxidoreductase subunit H OS=Le...    37   0.047
sp|Q04V66|NUOH_LEPBJ NADH-quinone oxidoreductase subunit H OS=Le...    37   0.047
sp|A4YVK3|NUOH_BRASO NADH-quinone oxidoreductase subunit H OS=Br...    37   0.047

>sp|Q01148|NU1M_WHEAT NADH-ubiquinone oxidoreductase chain 1
           OS=Triticum aestivum GN=ND1 PE=2 SV=1
          Length = 325

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGIII GWSS +
Sbjct: 106 GLLYLFAISSLGVYGIIIAGWSSNS 130


>sp|Q01300|NU1M_PETHY NADH-ubiquinone oxidoreductase chain 1
           OS=Petunia hybrida GN=ND1 PE=3 SV=1
          Length = 325

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGIII GWSS +
Sbjct: 106 GLLYLFAISSLGVYGIIIAGWSSNS 130


>sp|P31839|NU1M_OENBE NADH-ubiquinone oxidoreductase chain 1
           OS=Oenothera bertiana GN=ND1 PE=2 SV=1
          Length = 331

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGIII GWSS +
Sbjct: 112 GLLYLFAISSLGVYGIIIAGWSSNS 136


>sp|P92558|NU1M_ARATH NADH-ubiquinone oxidoreductase chain 1
           OS=Arabidopsis thaliana GN=ND1 PE=1 SV=4
          Length = 325

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGIII GWSS +
Sbjct: 106 GLLYLFAISSLGVYGIIIAGWSSNS 130


>sp|Q0BSK9|NUOH_GRABC NADH-quinone oxidoreductase subunit H
           OS=Granulibacter bethesdensis (strain ATCC BAA-1260 /
           CGDNIH1) GN=nuoH PE=3 SV=1
          Length = 342

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYG+II GW+S +
Sbjct: 120 GVLYLFAISSLGVYGVIIAGWASNS 144


>sp|Q73IK1|NUOH_WOLPM NADH-quinone oxidoreductase subunit H
           OS=Wolbachia pipientis wMel GN=nuoH PE=3 SV=1
          Length = 341

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ +  AISSLGVYG+II GWSS +
Sbjct: 116 GVLYVLAISSLGVYGVIIAGWSSNS 140


>sp|A7HY42|NUOH_PARL1 NADH-quinone oxidoreductase subunit H
           OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023
           / NCIMB 13966) GN=nuoH PE=3 SV=1
          Length = 337

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           GI + FAISSLGVYG+I+ GW+S +
Sbjct: 116 GILYIFAISSLGVYGVIMAGWASNS 140


>sp|Q2W3J1|NUOH_MAGMM NADH-quinone oxidoreductase subunit H
           OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
           700264) GN=nuoH PE=3 SV=1
          Length = 341

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGII+ GW+S +
Sbjct: 120 GVLYLFAISSLGVYGIIMAGWASNS 144


>sp|Q5HB99|NUOH_EHRRW NADH-quinone oxidoreductase subunit H
           OS=Ehrlichia ruminantium (strain Welgevonden) GN=nuoH
           PE=3 SV=1
          Length = 367

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ +  AISSLGVYGIII GWSS +
Sbjct: 133 GVLYILAISSLGVYGIIIAGWSSNS 157


>sp|Q5FGW5|NUOH_EHRRG NADH-quinone oxidoreductase subunit H
           OS=Ehrlichia ruminantium (strain Gardel) GN=nuoH PE=3
           SV=1
          Length = 367

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 17/25 (68%), Positives = 20/25 (80%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ +  AISSLGVYGIII GWSS +
Sbjct: 133 GVLYILAISSLGVYGIIIAGWSSNS 157
tr_hit_id Q6JP54
Definition tr|Q6JP54|Q6JP54_9FILI NADH-ubiquinone oxidoreductase chain 1 (Fragment) OS=Adiantum sp. Qiu 95118
Align length 25
Score (bit) 51.6
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916735|Adiantum capillus-veneris mRNA, clone:
YMU001_000090_H10.
         (435 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6JP54|Q6JP54_9FILI NADH-ubiquinone oxidoreductase chain 1 (F...    52   2e-05
tr|Q6JP66|Q6JP66_9BRYO NADH-ubiquinone oxidoreductase chain 1 (F...    43   0.009
tr|A6YEC3|A6YEC3_CHLAT NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.026
tr|Q9MF78|Q9MF78_BETVU NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q8W9S1|Q8W9S1_MESVI NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q8HCR7|Q8HCR7_ORYSJ NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q6YSM5|Q6YSM5_BRANA NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q6R977|Q6R977_MAIZE NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q5U6E2|Q5U6E2_BETVU NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q5M9U6|Q5M9U6_TOBAC NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q332N4|Q332N4_WHEAT NADH-ubiquinone oxidoreductase chain 1 (F...    41   0.034
tr|Q2F9A3|Q2F9A3_ORYSI NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q2F8Z6|Q2F8Z6_ORYSJ NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q1KKB7|Q1KKB7_MAIZE NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q0QG26|Q0QG26_BETVU NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q0GRB6|Q0GRB6_ZEALU NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q0GR89|Q0GR89_ZEAPE NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q0GR57|Q0GR57_ZEAMP NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q09EQ6|Q09EQ6_TRIDA NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|Q09EM4|Q09EM4_SORBI NADH-ubiquinone oxidoreductase chain 1 OS...    41   0.034
tr|B8Q6M5|B8Q6M5_BAMOL NADH dehydrogenase subunit 1 (Fragment) O...    41   0.034
tr|B4XAP3|B4XAP3_9POAL NADH dehydrogenase subunit 1 (Fragment) O...    41   0.034
tr|B1A0V1|B1A0V1_BAMOL NADH-ubiquinone oxidoreductase chain 1 (F...    41   0.034
tr|Q95867|Q95867_NICSY NADH-ubiquinone oxidoreductase chain 1 OS...    40   0.044
tr|Q9TCA0|Q9TCA0_NEPOL NADH-ubiquinone oxidoreductase chain 1 OS...    40   0.058
tr|Q6JP63|Q6JP63_EQUAR NADH-ubiquinone oxidoreductase chain 1 (F...    40   0.058
tr|Q6JP57|Q6JP57_9FILI NADH-ubiquinone oxidoreductase chain 1 (F...    40   0.058
tr|Q8M1E2|Q8M1E2_CHAGL NADH-ubiquinone oxidoreductase chain 1 OS...    40   0.076
tr|Q7YAN0|Q7YAN0_CHAVU NADH-ubiquinone oxidoreductase chain 1 OS...    40   0.076
tr|Q6JP71|Q6JP71_9BRYO NADH-ubiquinone oxidoreductase chain 1 (F...    40   0.076

>tr|Q6JP54|Q6JP54_9FILI NADH-ubiquinone oxidoreductase chain 1
           (Fragment) OS=Adiantum sp. Qiu 95118 GN=nad1 PE=3 SV=1
          Length = 197

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           GIFHPFAISSLGVYGIIIVGWSS +
Sbjct: 45  GIFHPFAISSLGVYGIIIVGWSSNS 69


>tr|Q6JP66|Q6JP66_9BRYO NADH-ubiquinone oxidoreductase chain 1
           (Fragment) OS=Takakia ceratophylla GN=nad1 PE=3 SV=1
          Length = 197

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSS 367
           GI HPFAISS GVYGII  GWSS
Sbjct: 45  GILHPFAISSPGVYGIITAGWSS 67


>tr|A6YEC3|A6YEC3_CHLAT NADH-ubiquinone oxidoreductase chain 1
           OS=Chlorokybus atmophyticus GN=nad1 PE=3 SV=1
          Length = 329

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           GI + FA+SSLGVYGIII GWSS +
Sbjct: 109 GILYLFAVSSLGVYGIIIAGWSSNS 133


>tr|Q9MF78|Q9MF78_BETVU NADH-ubiquinone oxidoreductase chain 1
           OS=Beta vulgaris subsp. vulgaris GN=nad1 PE=3 SV=2
          Length = 325

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGIII GWSS +
Sbjct: 106 GLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q8W9S1|Q8W9S1_MESVI NADH-ubiquinone oxidoreductase chain 1
           OS=Mesostigma viride GN=nad1 PE=3 SV=1
          Length = 322

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           GI + FAISSLGVYGI+I GWSS +
Sbjct: 103 GILYIFAISSLGVYGILIAGWSSNS 127


>tr|Q8HCR7|Q8HCR7_ORYSJ NADH-ubiquinone oxidoreductase chain 1
           OS=Oryza sativa subsp. japonica GN=nad1 PE=3 SV=2
          Length = 325

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGIII GWSS +
Sbjct: 106 GLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q6YSM5|Q6YSM5_BRANA NADH-ubiquinone oxidoreductase chain 1
           OS=Brassica napus GN=nad1 PE=3 SV=1
          Length = 325

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGIII GWSS +
Sbjct: 106 GLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q6R977|Q6R977_MAIZE NADH-ubiquinone oxidoreductase chain 1
           OS=Zea mays GN=nad1 PE=3 SV=1
          Length = 325

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGIII GWSS +
Sbjct: 106 GLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q5U6E2|Q5U6E2_BETVU NADH-ubiquinone oxidoreductase chain 1
           OS=Beta vulgaris subsp. vulgaris GN=nad1 PE=3 SV=1
          Length = 325

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGIII GWSS +
Sbjct: 106 GLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q5M9U6|Q5M9U6_TOBAC NADH-ubiquinone oxidoreductase chain 1
           OS=Nicotiana tabacum GN=nad1 PE=3 SV=1
          Length = 325

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -1

Query: 435 GIFHPFAISSLGVYGIIIVGWSSRA 361
           G+ + FAISSLGVYGIII GWSS +
Sbjct: 106 GLLYLFAISSLGVYGIIIAGWSSNS 130