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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916741
Clone id YMU001_000091_A07
Library
Length 432
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATGAGCAGCATGTCAACTGGGCACTTCGCCTTTATACCCAATACCC
ACAATTTCTCACAAATGTTTAGGAAAGCCATACAATCACTATCCCACATTTCAAAGACAA
TCAAAGGAATATTTAAGTCACCCTAGTGATGGTTGGGGAAGCACTGCAGTAAGAGCGAAA
AAAATAACGAAGATACAACATAGCTTATAGGCGAAGAACACAGCCCTTAGAAGTTATGAC
CCGAAAAAATTTGACATGGCACAAGTGATGGCATCAAGAGAGAACGCTTCCCTTGCACCT
ACACACCCAACACATAATAACTTCAAGAACCACTATGCAAACGAGTACAGGAGTCCAAAG
CCCTCCTTCCTATCTTATGATACCTGAAGAGGGAGAGTCCACATTTATATGCCAATGTTG
CAAGGAGTATAC
■■Homology search results ■■ -
sp_hit_id Q54C27
Definition sp|Q54C27|OST1_DICDI Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Dictyostelium discoideum
Align length 56
Score (bit) 35.4
E-value 0.09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916741|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_A07.
         (416 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54C27|OST1_DICDI Dolichyl-diphosphooligosaccharide--protein ...    35   0.090
sp|Q811A3|PLOD2_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygen...    32   0.76 
sp|Q9R0B9|PLOD2_MOUSE Procollagen-lysine,2-oxoglutarate 5-dioxyg...    32   1.3  
sp|Q05100|U1141_GAHVG Uncharacterized protein US1141 (Fragment) ...    30   4.9  
sp|Q00942|TOP2_ASFB7 DNA topoisomerase 2 OS=African swine fever ...    29   8.4  

>sp|Q54C27|OST1_DICDI Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase subunit 1 OS=Dictyostelium
           discoideum GN=ost1 PE=2 SV=1
          Length = 460

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 246 QVMASRENASLAPTHPTHNNFKNHYANEYRSPKPSFLSYDT*RGRVHIYMPMLQGV 413
           Q +A+R N  + P  P    +KN +   Y  P   FLS DT  G+ H+ +    G+
Sbjct: 297 QYLANRINFKIQPRFPLMGGWKNTFYTGYNLPIEKFLSVDTLTGQYHLNVTFGVGI 352


>sp|Q811A3|PLOD2_RAT Procollagen-lysine,2-oxoglutarate 5-dioxygenase
           2 OS=Rattus norvegicus GN=Plod2 PE=2 SV=1
          Length = 737

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 17  GHFAFIPNTHNFSQMFRKAIQSLSHISKTIKGIFKSP**WLGKHCSK 157
           G F +I N H F ++   A  + SH++  +  IF++P  W  K+ ++
Sbjct: 501 GVFMYISNRHEFGRLISTANYNTSHLNNDLWQIFENPVDWKEKYINR 547


>sp|Q9R0B9|PLOD2_MOUSE Procollagen-lysine,2-oxoglutarate
           5-dioxygenase 2 OS=Mus musculus GN=Plod2 PE=2 SV=1
          Length = 737

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 17  GHFAFIPNTHNFSQMFRKAIQSLSHISKTIKGIFKSP**WLGKHCSK 157
           G F +I N H F ++   A  + SH++     IF++P  W  K+ ++
Sbjct: 501 GVFMYISNRHEFGRLISTANYNTSHLNNDFWQIFENPVDWKEKYINR 547


>sp|Q05100|U1141_GAHVG Uncharacterized protein US1141 (Fragment)
           OS=Gallid herpesvirus 2 (strain GA) GN=US1141 PE=4 SV=1
          Length = 380

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 237 DMAQVMASRENASLAPT-HPTHNNFKNHYANEYRSPKPSFLSYD 365
           DM+ +   ++N+ + PT HP  N       NEY+ P P F + D
Sbjct: 31  DMSAMGLKKDNSPIIPTLHPKGNENLRATLNEYKIPSPLFDTLD 74


>sp|Q00942|TOP2_ASFB7 DNA topoisomerase 2 OS=African swine fever virus
            (strain Badajoz 1971 Vero-adapted) GN=TOP PE=3 SV=1
          Length = 1192

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +3

Query: 69   KPYNHYPTFQRQSKEYLSHPSDGWGSTAVRAKKITKIQHSL*AKNTALRSYDPKKFDMAQ 248
            +P  + P       EY ++PS+GW        K T     L      +R+Y  K     +
Sbjct: 833  EPEYYVPVLPLAIMEYGANPSEGW--------KYTTWARQLEDILALVRAYVDKDNPKHE 884

Query: 249  VM--ASRENASLAPTHPTHNNFKNH 317
            ++  A +   ++ P  P++ NFK H
Sbjct: 885  LLHYAIKHKITILPLRPSNYNFKGH 909
tr_hit_id B8L5X6
Definition tr|B8L5X6|B8L5X6_9GAMM Hydrolase, NUDIX family OS=Stenotrophomonas sp. SKA14
Align length 90
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916741|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_A07.
         (416 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8L5X6|B8L5X6_9GAMM Hydrolase, NUDIX family OS=Stenotrophomon...    39   0.17 
tr|Q5KJP1|Q5KJP1_CRYNE Expressed protein (Putative uncharacteriz...    35   1.9  
tr|B4HU19|B4HU19_DROSE GM14002 OS=Drosophila sechellia GN=GM1400...    34   4.1  
tr|Q894B1|Q894B1_CLOTE Pleiotropic regulatory protein OS=Clostri...    33   7.1  
tr|B3MD72|B3MD72_DROAN GF11430 OS=Drosophila ananassae GN=GF1143...    33   7.1  
tr|A7Q0V0|A7Q0V0_VITVI Chromosome chr7 scaffold_42, whole genome...    33   9.2  
tr|A7MB83|A7MB83_BOVIN PLOD2 protein OS=Bos taurus GN=PLOD2 PE=2...    33   9.2  

>tr|B8L5X6|B8L5X6_9GAMM Hydrolase, NUDIX family OS=Stenotrophomonas
           sp. SKA14 GN=SSKA14_435 PE=4 SV=1
          Length = 198

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +3

Query: 102 QSKEYLSHPSDGWGSTAVRAKKITKIQHSL*AKNTALRSYDPKKFDMAQVMASRENASLA 281
           Q +  L H   GW + AVRA +   +Q +L    T L       F +A + + R N    
Sbjct: 51  QGRLLLEHNRSGWMTPAVRANRKQSVQEALRQLATEL-GLQVSPFTLAALYSYRFNED-- 107

Query: 282 PTHPTHN--NFKNHYANEYRSPKPSFLSYD 365
           P  PTH+  +F+ HY    RS +P   + D
Sbjct: 108 PPDPTHDAVSFRQHYRATLRSGQPPATTAD 137


>tr|Q5KJP1|Q5KJP1_CRYNE Expressed protein (Putative uncharacterized
           protein) OS=Cryptococcus neoformans GN=CNBC1340 PE=4
           SV=1
          Length = 552

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 267 NASLAPTHPTHNNFKNHYANEYRSPKPSFLSYDT*RGRVHIYMP 398
           N SLAPTHPT +  +   ++ YR P P+ L+  +    VH Y P
Sbjct: 22  NPSLAPTHPTTSAEEESESHPYRKPGPAILNIQS--QSVHSYAP 63


>tr|B4HU19|B4HU19_DROSE GM14002 OS=Drosophila sechellia GN=GM14002
           PE=4 SV=1
          Length = 749

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
 Frame = +3

Query: 36  PIPTISHKCLGKPYNHYPTFQRQSKEYLSHPSDGWGSTAVRAKKITKIQHSL*AKNTALR 215
           P+P+  H+ L  P + Y  ++++       P+ G+        K      S+   N  + 
Sbjct: 207 PVPSYPHQDLPAP-DSYSIYEQKI------PNVGYHQNFAEPPKYPPKHGSINNPNFEI- 258

Query: 216 SYDPKKFDMAQVMASRENASLAPTHP--THNNFKNHYANEYRSPKP 347
           +Y P  F+++    S  + S  P+HP  +H+ F    +N Y  P P
Sbjct: 259 AYSPPAFEISTSYQSNHHQSYVPSHPPSSHDGFAEPPSNNYVKPPP 304


>tr|Q894B1|Q894B1_CLOTE Pleiotropic regulatory protein
           OS=Clostridium tetani GN=CTC_01638 PE=4 SV=1
          Length = 373

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 12  QLGTSPLYPIPTISHKC---LGKPYNHYPTFQRQSKEYLSHP 128
           ++GTS  YPIP    KC   LG     +P  +R SKE L+ P
Sbjct: 309 EIGTSIYYPIPLHLQKCFSYLGHKEGDFPVAERVSKEILALP 350


>tr|B3MD72|B3MD72_DROAN GF11430 OS=Drosophila ananassae GN=GF11430
           PE=4 SV=1
          Length = 2568

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 174 KIQHSL*AKNTALRSYDPKKFDMAQVMASRENASLAPTHPTHNNFKNHYANEYRSPKPS 350
           K+Q +   KNTAL +  P +       A+  N    P H  HN+  N+Y  + +   PS
Sbjct: 439 KLQAAAGNKNTALLT--PNQIQHLSASATHSNQQFHPLHHHHNHHNNNYPQQQQQQPPS 495


>tr|A7Q0V0|A7Q0V0_VITVI Chromosome chr7 scaffold_42, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028188001
           PE=4 SV=1
          Length = 651

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = +3

Query: 66  GKPYNHYPTFQRQSKEYLSHPSDGWGSTAVRAKKITKIQHSL*AKNTA-LRSYDPKKFDM 242
           G   N Y +F  Q++    H     GS++  +  I++I HS  A N A  RS+DP   D 
Sbjct: 371 GSAPNSYASFA-QARPTTVHGFASSGSSS-NSGSISRISHSASAPNLADSRSFDPSMSDF 428

Query: 243 AQVMASRENASLAPTHPTHNNFKNHYANE 329
             V A+++      T P  N    H AN+
Sbjct: 429 PPVSATQKQKLPTITQPVLNAEAVHTANK 457


>tr|A7MB83|A7MB83_BOVIN PLOD2 protein OS=Bos taurus GN=PLOD2 PE=2
           SV=1
          Length = 762

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 17  GHFAFIPNTHNFSQMFRKAIQSLSHISKTIKGIFKSP**WLGKHCSK 157
           G F +I N H F ++   A  ++SH +  +  IF++P  W  K+ ++
Sbjct: 526 GVFMYISNRHEFGRLLSTANYNISHFNNDLWQIFENPVDWKEKYINR 572