BP916757
Clone id YMU001_000091_C04
Library
Length 352
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GAGTACCTGCGCAAAGTCATCCCAAGATATCCATAAGTCATTAACCACTTTCTCGGAACA
ATAGTATCCCAAGAGATTAAGAACAGTAGCTCGGTTATTATGCCAAGAGCCCAAAGTAGC
TATACTTACCTTCTGAATTAATAGACCCTTGATTTCATTATACCAGCTATTGGCATCCTT
TTAAACAAAGACAGGTAAGTATCCGGCCAAGTTCGTGCAAGGCTTTAGATTTATTTTTTC
CATACTGTGTAACCATCCAACGAATAACTCTATGAGAAAAAACCAGTTAAAACTACGAAA
AAACCAGTCATTATGCCGATTTTTGCAAAGCCCTGCAGCGGCTAGAATCAGA
■■Homology search results ■■ -
sp_hit_id Q10003
Definition sp|Q10003|YRS7_CAEEL Uncharacterized protein T05H10.7 OS=Caenorhabditis elegans
Align length 31
Score (bit) 29.6
E-value 4.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916757|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_C04.
(352 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q10003|YRS7_CAEEL Uncharacterized protein T05H10.7 OS=Caenorh... 30 4.8
sp|P55674|NIFN_RHISN Nitrogenase iron-molybdenum cofactor biosyn... 30 4.8
sp|Q5KAM7|SEC23_CRYNE Protein transport protein SEC23 OS=Cryptoc... 29 6.3
sp|Q85B66|YCF1A_ANTFO Putative membrane protein ycf1 N-terminal ... 29 8.2

>sp|Q10003|YRS7_CAEEL Uncharacterized protein T05H10.7
OS=Caenorhabditis elegans GN=T05H10.7 PE=2 SV=1
Length = 796

Score = 29.6 bits (65), Expect = 4.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2

Query: 93 RATVLNLLGYYCSEKVVNDLWISWDDFAQVL 1
R ++L GYY K V+D W+ + D Q+L
Sbjct: 186 RVDRVDLFGYYAGRKCVSDGWLQYPDENQIL 216


>sp|P55674|NIFN_RHISN Nitrogenase iron-molybdenum cofactor
biosynthesis protein nifN OS=Rhizobium sp. (strain
NGR234) GN=nifN PE=3 SV=1
Length = 469

Score = 29.6 bits (65), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1

Query: 262 RWMVTQYGKNKSKALHELGRILTCLCL 182
RWM T YG + + ELGR + C+ +
Sbjct: 234 RWMPTAYGGTSIEDIQELGRAVRCIAI 260


>sp|Q5KAM7|SEC23_CRYNE Protein transport protein SEC23
OS=Cryptococcus neoformans GN=SEC23 PE=3 SV=1
Length = 763

Score = 29.3 bits (64), Expect = 6.3
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3

Query: 153 FHYTSYWHPFKQRQVSIRPSSCKALDLFFPYCVTIQRITL*EKTS*NYEKTSHYADFCKA 332
+ + S HP VSIRP LD FF + + T+ + NY++ YA+F +
Sbjct: 621 YGFDSEPHPVLLDSVSIRPDVILLLDTFF-HILIFHGETIAQWRKANYQEQEDYANFKEL 679

Query: 333 LQ 338
L+
Sbjct: 680 LE 681


>sp|Q85B66|YCF1A_ANTFO Putative membrane protein ycf1 N-terminal
part OS=Anthoceros formosae GN=ycf1 PE=2 SV=1
Length = 1031

Score = 28.9 bits (63), Expect = 8.2
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2

Query: 303 FFRSFNWFFLIELFVGWLHSMEKINLKPCTNLAGYLPVFV*KDANSWYNEIKGLLIQKVS 124
F S N FF+I LF GWL + NL+ +L + + ++++ Y +K L+ + S
Sbjct: 160 FRYSHNSFFVISLFCGWLGGNILL-----INLSKFLLIRIKNNSSTLYLLVKRLIYRTFS 214

Query: 123 I 121
I
Sbjct: 215 I 215


tr_hit_id Q26BU4
Definition tr|Q26BU4|Q26BU4_9BACT Putative uncharacterized protein OS=Flavobacteria bacterium BBFL7
Align length 74
Score (bit) 34.3
E-value 3.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916757|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_C04.
(352 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q26BU4|Q26BU4_9BACT Putative uncharacterized protein OS=Flavo... 34 3.1
tr|Q9EU22|Q9EU22_ECOLX Putative uncharacterized protein yclC OS=... 34 4.1
tr|B7UHF8|B7UHF8_ECO27 Predicted 4-hydroxybenzoate decarboxylase... 34 4.1
tr|B7N6W8|B7N6W8_ECOLX Conserved putative non-oxidative hydroxya... 34 4.1
tr|B1EF04|B1EF04_9ESCH 4-hydroxybenzoate decarboxylase, subunit ... 34 4.1
tr|Q8ZMG0|Q8ZMG0_SALTY Putative 3-polyprenyl-4-hydroxybenzoate d... 33 9.1
tr|Q8Z475|Q8Z475_SALTI Putative uncharacterized protein STY3047 ... 33 9.1
tr|Q83JY4|Q83JY4_SHIFL Putative 4-hydroxybenzoate decarboxylase ... 33 9.1
tr|Q7DBA7|Q7DBA7_ECO57 Putative uncharacterized protein (Putativ... 33 9.1
tr|Q5PEF3|Q5PEF3_SALPA Putative uncharacterized protein OS=Salmo... 33 9.1
tr|Q57KK4|Q57KK4_SALCH Putative 3-polyprenyl-4-hydroxybenzoate d... 33 9.1
tr|Q0T1G9|Q0T1G9_SHIF8 Putative 4-hydroxybenzoate decarboxylase ... 33 9.1
tr|B6I6C8|B6I6C8_ECOSE Putative uncharacterized protein OS=Esche... 33 9.1
tr|B5Z3A0|B5Z3A0_ECO5E 4-hydroxybenzoate decarboxylase, subunit ... 33 9.1
tr|B5XV46|B5XV46_KLEP3 4-hydroxybenzoate decarboxylase, subunit ... 33 9.1
tr|B5RDP5|B5RDP5_SALG2 Putative uncharacterized protein OS=Salmo... 33 9.1
tr|B5QW10|B5QW10_SALEP Putative uncharacterized protein OS=Salmo... 33 9.1
tr|B5FTR7|B5FTR7_SALDC 4-hydroxybenzoate decarboxylase, subunit ... 33 9.1
tr|B5F401|B5F401_SALA4 4-hydroxybenzoate decarboxylase, subunit ... 33 9.1
tr|B5BEX6|B5BEX6_SALPK Putative uncharacterized protein OS=Salmo... 33 9.1
tr|B4TTV3|B4TTV3_SALSV 4-hydroxybenzoate decarboxylase, subunit ... 33 9.1
tr|B4TFV9|B4TFV9_SALHS 4-hydroxybenzoate decarboxylase, subunit ... 33 9.1
tr|B4T449|B4T449_SALNS 4-hydroxybenzoate decarboxylase, subunit ... 33 9.1
tr|B1LQ58|B1LQ58_ECOSM 4-hydroxybenzoate decarboxylase, subunit ... 33 9.1
tr|A9N1H1|A9N1H1_SALPB Putative uncharacterized protein OS=Salmo... 33 9.1
tr|A9MF37|A9MF37_SALAR Putative uncharacterized protein OS=Salmo... 33 9.1
tr|A7ZQI2|A7ZQI2_ECO24 4-hydroxybenzoate decarboxylase, subunit ... 33 9.1
tr|Q9X727|Q9X727_ECOLX YclC protein OS=Escherichia coli GN=yclC ... 33 9.1
tr|Q9F8R9|Q9F8R9_ECOLX Putative uncharacterized protein yclC OS=... 33 9.1
tr|Q9F8R3|Q9F8R3_ECOLX Conserved putative non-oxidative hydroxya... 33 9.1

>tr|Q26BU4|Q26BU4_9BACT Putative uncharacterized protein
OS=Flavobacteria bacterium BBFL7 GN=BBFL7_00616 PE=4
SV=1
Length = 232

Score = 34.3 bits (77), Expect = 3.1
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = -2

Query: 306 WFFRSFNWFFLIELFVGWLHSM---EKINLKPCTNLAGYLPVFV*KDANSWYNEIKGLLI 136
W + S ++F +I ++VG S+ +K+N + ++ ++P+ ++ SWYN++K L
Sbjct: 47 WDWESIDFFKIILIWVGVQSSLMIFQKLNYEEPRDIDAFIPIN--NESLSWYNKLKNLFG 104

Query: 135 QKVSIATLGSWHNN 94
VS +G + N
Sbjct: 105 IAVSTCFIGYFFYN 118


>tr|Q9EU22|Q9EU22_ECOLX Putative uncharacterized protein yclC
OS=Escherichia coli GN=yclC PE=4 SV=1
Length = 475

Score = 33.9 bits (76), Expect = 4.1
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
W++ I+G + +V++ T+GSW N+ A L L +K +++ WD+F
Sbjct: 50 WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|B7UHF8|B7UHF8_ECO27 Predicted 4-hydroxybenzoate decarboxylase
OS=Escherichia coli O127:H6 str. E2348/69
GN=E2348_C_3008 PE=4 SV=1
Length = 475

Score = 33.9 bits (76), Expect = 4.1
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
W++ I+G + +V++ T+GSW N+ A L L +K +++ WD+F
Sbjct: 50 WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|B7N6W8|B7N6W8_ECOLX Conserved putative non-oxidative
hydroxyarylic acid decarboxylase activity OS=Escherichia
coli GN=ECUMN_3061 PE=4 SV=1
Length = 475

Score = 33.9 bits (76), Expect = 4.1
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
W++ I+G + +V++ T+GSW N+ A L L +K +++ WD+F
Sbjct: 50 WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|B1EF04|B1EF04_9ESCH 4-hydroxybenzoate decarboxylase, subunit C
OS=Escherichia albertii TW07627 GN=kpdC PE=4 SV=1
Length = 475

Score = 33.9 bits (76), Expect = 4.1
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
W++ I+G + +V++ T+GSW N+ A L L +K +++ WD+F
Sbjct: 50 WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|Q8ZMG0|Q8ZMG0_SALTY Putative 3-polyprenyl-4-hydroxybenzoate
decarboxylase OS=Salmonella typhimurium GN=STM2922 PE=4
SV=1
Length = 475

Score = 32.7 bits (73), Expect = 9.1
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
W++ I+G +V++ T+GSW N+ A L L +K +++ WD+F
Sbjct: 50 WFDNIRGFTDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|Q8Z475|Q8Z475_SALTI Putative uncharacterized protein STY3047
(Putative uncharacterized protein) OS=Salmonella typhi
GN=STY3047 PE=4 SV=1
Length = 475

Score = 32.7 bits (73), Expect = 9.1
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
W++ I+G +V++ T+GSW N+ A L L +K +++ WD+F
Sbjct: 50 WFDNIRGFTDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|Q83JY4|Q83JY4_SHIFL Putative 4-hydroxybenzoate decarboxylase
OS=Shigella flexneri GN=yclC PE=4 SV=1
Length = 316

Score = 32.7 bits (73), Expect = 9.1
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
W++ I+G +V++ T+GSW N+ A L L +K +++ WD+F
Sbjct: 50 WFDNIRGFTDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|Q7DBA7|Q7DBA7_ECO57 Putative uncharacterized protein (Putative
4-hydroxybenzoate decarboxylase) OS=Escherichia coli
O157:H7 GN=ECs3592 PE=4 SV=1
Length = 475

Score = 32.7 bits (73), Expect = 9.1
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
W++ I+G +V++ T+GSW N+ A L L +K +++ WD+F
Sbjct: 50 WFDNIRGFTDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|Q5PEF3|Q5PEF3_SALPA Putative uncharacterized protein
OS=Salmonella paratyphi A GN=SPA2778 PE=4 SV=1
Length = 673

Score = 32.7 bits (73), Expect = 9.1
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
W++ I+G +V++ T+GSW N+ A L L +K +++ WD+F
Sbjct: 248 WFDNIRGFTDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 297