NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916757
Clone id YMU001_000091_C04
Library
Length 352
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGCAAAGTCATCCCAAGATATCCATAAGTCATTAACCACTTTCTCGGAACA
ATAGTATCCCAAGAGATTAAGAACAGTAGCTCGGTTATTATGCCAAGAGCCCAAAGTAGC
TATACTTACCTTCTGAATTAATAGACCCTTGATTTCATTATACCAGCTATTGGCATCCTT
TTAAACAAAGACAGGTAAGTATCCGGCCAAGTTCGTGCAAGGCTTTAGATTTATTTTTTC
CATACTGTGTAACCATCCAACGAATAACTCTATGAGAAAAAACCAGTTAAAACTACGAAA
AAACCAGTCATTATGCCGATTTTTGCAAAGCCCTGCAGCGGCTAGAATCAGA
■■Homology search results ■■ -
sp_hit_id Q10003
Definition sp|Q10003|YRS7_CAEEL Uncharacterized protein T05H10.7 OS=Caenorhabditis elegans
Align length 31
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916757|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_C04.
         (352 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10003|YRS7_CAEEL Uncharacterized protein T05H10.7 OS=Caenorh...    30   4.8  
sp|P55674|NIFN_RHISN Nitrogenase iron-molybdenum cofactor biosyn...    30   4.8  
sp|Q5KAM7|SEC23_CRYNE Protein transport protein SEC23 OS=Cryptoc...    29   6.3  
sp|Q85B66|YCF1A_ANTFO Putative membrane protein ycf1 N-terminal ...    29   8.2  

>sp|Q10003|YRS7_CAEEL Uncharacterized protein T05H10.7
           OS=Caenorhabditis elegans GN=T05H10.7 PE=2 SV=1
          Length = 796

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 93  RATVLNLLGYYCSEKVVNDLWISWDDFAQVL 1
           R   ++L GYY   K V+D W+ + D  Q+L
Sbjct: 186 RVDRVDLFGYYAGRKCVSDGWLQYPDENQIL 216


>sp|P55674|NIFN_RHISN Nitrogenase iron-molybdenum cofactor
           biosynthesis protein nifN OS=Rhizobium sp. (strain
           NGR234) GN=nifN PE=3 SV=1
          Length = 469

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 262 RWMVTQYGKNKSKALHELGRILTCLCL 182
           RWM T YG    + + ELGR + C+ +
Sbjct: 234 RWMPTAYGGTSIEDIQELGRAVRCIAI 260


>sp|Q5KAM7|SEC23_CRYNE Protein transport protein SEC23
           OS=Cryptococcus neoformans GN=SEC23 PE=3 SV=1
          Length = 763

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 153 FHYTSYWHPFKQRQVSIRPSSCKALDLFFPYCVTIQRITL*EKTS*NYEKTSHYADFCKA 332
           + + S  HP     VSIRP     LD FF + +     T+ +    NY++   YA+F + 
Sbjct: 621 YGFDSEPHPVLLDSVSIRPDVILLLDTFF-HILIFHGETIAQWRKANYQEQEDYANFKEL 679

Query: 333 LQ 338
           L+
Sbjct: 680 LE 681


>sp|Q85B66|YCF1A_ANTFO Putative membrane protein ycf1 N-terminal
           part OS=Anthoceros formosae GN=ycf1 PE=2 SV=1
          Length = 1031

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 303 FFRSFNWFFLIELFVGWLHSMEKINLKPCTNLAGYLPVFV*KDANSWYNEIKGLLIQKVS 124
           F  S N FF+I LF GWL     +      NL+ +L + +  ++++ Y  +K L+ +  S
Sbjct: 160 FRYSHNSFFVISLFCGWLGGNILL-----INLSKFLLIRIKNNSSTLYLLVKRLIYRTFS 214

Query: 123 I 121
           I
Sbjct: 215 I 215
tr_hit_id Q26BU4
Definition tr|Q26BU4|Q26BU4_9BACT Putative uncharacterized protein OS=Flavobacteria bacterium BBFL7
Align length 74
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916757|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_C04.
         (352 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q26BU4|Q26BU4_9BACT Putative uncharacterized protein OS=Flavo...    34   3.1  
tr|Q9EU22|Q9EU22_ECOLX Putative uncharacterized protein yclC OS=...    34   4.1  
tr|B7UHF8|B7UHF8_ECO27 Predicted 4-hydroxybenzoate decarboxylase...    34   4.1  
tr|B7N6W8|B7N6W8_ECOLX Conserved putative non-oxidative hydroxya...    34   4.1  
tr|B1EF04|B1EF04_9ESCH 4-hydroxybenzoate decarboxylase, subunit ...    34   4.1  
tr|Q8ZMG0|Q8ZMG0_SALTY Putative 3-polyprenyl-4-hydroxybenzoate d...    33   9.1  
tr|Q8Z475|Q8Z475_SALTI Putative uncharacterized protein STY3047 ...    33   9.1  
tr|Q83JY4|Q83JY4_SHIFL Putative 4-hydroxybenzoate decarboxylase ...    33   9.1  
tr|Q7DBA7|Q7DBA7_ECO57 Putative uncharacterized protein (Putativ...    33   9.1  
tr|Q5PEF3|Q5PEF3_SALPA Putative uncharacterized protein OS=Salmo...    33   9.1  
tr|Q57KK4|Q57KK4_SALCH Putative 3-polyprenyl-4-hydroxybenzoate d...    33   9.1  
tr|Q0T1G9|Q0T1G9_SHIF8 Putative 4-hydroxybenzoate decarboxylase ...    33   9.1  
tr|B6I6C8|B6I6C8_ECOSE Putative uncharacterized protein OS=Esche...    33   9.1  
tr|B5Z3A0|B5Z3A0_ECO5E 4-hydroxybenzoate decarboxylase, subunit ...    33   9.1  
tr|B5XV46|B5XV46_KLEP3 4-hydroxybenzoate decarboxylase, subunit ...    33   9.1  
tr|B5RDP5|B5RDP5_SALG2 Putative uncharacterized protein OS=Salmo...    33   9.1  
tr|B5QW10|B5QW10_SALEP Putative uncharacterized protein OS=Salmo...    33   9.1  
tr|B5FTR7|B5FTR7_SALDC 4-hydroxybenzoate decarboxylase, subunit ...    33   9.1  
tr|B5F401|B5F401_SALA4 4-hydroxybenzoate decarboxylase, subunit ...    33   9.1  
tr|B5BEX6|B5BEX6_SALPK Putative uncharacterized protein OS=Salmo...    33   9.1  
tr|B4TTV3|B4TTV3_SALSV 4-hydroxybenzoate decarboxylase, subunit ...    33   9.1  
tr|B4TFV9|B4TFV9_SALHS 4-hydroxybenzoate decarboxylase, subunit ...    33   9.1  
tr|B4T449|B4T449_SALNS 4-hydroxybenzoate decarboxylase, subunit ...    33   9.1  
tr|B1LQ58|B1LQ58_ECOSM 4-hydroxybenzoate decarboxylase, subunit ...    33   9.1  
tr|A9N1H1|A9N1H1_SALPB Putative uncharacterized protein OS=Salmo...    33   9.1  
tr|A9MF37|A9MF37_SALAR Putative uncharacterized protein OS=Salmo...    33   9.1  
tr|A7ZQI2|A7ZQI2_ECO24 4-hydroxybenzoate decarboxylase, subunit ...    33   9.1  
tr|Q9X727|Q9X727_ECOLX YclC protein OS=Escherichia coli GN=yclC ...    33   9.1  
tr|Q9F8R9|Q9F8R9_ECOLX Putative uncharacterized protein yclC OS=...    33   9.1  
tr|Q9F8R3|Q9F8R3_ECOLX Conserved putative non-oxidative hydroxya...    33   9.1  

>tr|Q26BU4|Q26BU4_9BACT Putative uncharacterized protein
           OS=Flavobacteria bacterium BBFL7 GN=BBFL7_00616 PE=4
           SV=1
          Length = 232

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
 Frame = -2

Query: 306 WFFRSFNWFFLIELFVGWLHSM---EKINLKPCTNLAGYLPVFV*KDANSWYNEIKGLLI 136
           W + S ++F +I ++VG   S+   +K+N +   ++  ++P+    ++ SWYN++K L  
Sbjct: 47  WDWESIDFFKIILIWVGVQSSLMIFQKLNYEEPRDIDAFIPIN--NESLSWYNKLKNLFG 104

Query: 135 QKVSIATLGSWHNN 94
             VS   +G +  N
Sbjct: 105 IAVSTCFIGYFFYN 118


>tr|Q9EU22|Q9EU22_ECOLX Putative uncharacterized protein yclC
           OS=Escherichia coli GN=yclC PE=4 SV=1
          Length = 475

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G +  +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|B7UHF8|B7UHF8_ECO27 Predicted 4-hydroxybenzoate decarboxylase
           OS=Escherichia coli O127:H6 str. E2348/69
           GN=E2348_C_3008 PE=4 SV=1
          Length = 475

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G +  +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|B7N6W8|B7N6W8_ECOLX Conserved putative non-oxidative
           hydroxyarylic acid decarboxylase activity OS=Escherichia
           coli GN=ECUMN_3061 PE=4 SV=1
          Length = 475

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G +  +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|B1EF04|B1EF04_9ESCH 4-hydroxybenzoate decarboxylase, subunit C
           OS=Escherichia albertii TW07627 GN=kpdC PE=4 SV=1
          Length = 475

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G +  +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFIDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|Q8ZMG0|Q8ZMG0_SALTY Putative 3-polyprenyl-4-hydroxybenzoate
           decarboxylase OS=Salmonella typhimurium GN=STM2922 PE=4
           SV=1
          Length = 475

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G    +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFTDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|Q8Z475|Q8Z475_SALTI Putative uncharacterized protein STY3047
           (Putative uncharacterized protein) OS=Salmonella typhi
           GN=STY3047 PE=4 SV=1
          Length = 475

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G    +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFTDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|Q83JY4|Q83JY4_SHIFL Putative 4-hydroxybenzoate decarboxylase
           OS=Shigella flexneri GN=yclC PE=4 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G    +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFTDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|Q7DBA7|Q7DBA7_ECO57 Putative uncharacterized protein (Putative
           4-hydroxybenzoate decarboxylase) OS=Escherichia coli
           O157:H7 GN=ECs3592 PE=4 SV=1
          Length = 475

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G    +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 50  WFDNIRGFTDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 99


>tr|Q5PEF3|Q5PEF3_SALPA Putative uncharacterized protein
           OS=Salmonella paratyphi A GN=SPA2778 PE=4 SV=1
          Length = 673

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 165 WYNEIKGLLIQKVSIATLGSWHNNRATVLNLLGYYCSEKVVNDLWISWDDF 13
           W++ I+G    +V++ T+GSW N+ A  L L      +K +++    WD+F
Sbjct: 248 WFDNIRGFTDARVAMNTIGSWQNH-AISLGLPPNTPVKKQIDEFIRRWDNF 297