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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916768
Clone id YMU001_000091_D04
Library
Length 415
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTCACTGCTGACTATTTCATTCAAATCAAAGACTGGTCTGCCAGTGACTTCTTTCACAG
GAGCAATCCCTTCAAATTCAGAAGGGACAACCAGAACAGCCTGACTGGACCCCTCCAAAC
ATTCATTATTGTTATGACTTGGAGTCGAAGTTCTGTGCAGACCTCCCATTACAGAAGACC
TTTCAAGACTTTCAAGACTAGATCCTGATAGAACACTGGCAATACCCTTGCTTTTCATCC
TCTCACAACCATTGCTTTCCCCAACTGCTTCTTGTTGCAAGGCAGGTTGCAAAGAGACTG
CCTTCAAGTTCTCCCTCATGGCTTGCATCGTCCGTGGCTCCACGGGCACACATGTCTGGG
TATCACACTCTCTGGCCCCATCTTTCCTAACATGTGTACGTGGGAAATTTGTCTC
■■Homology search results ■■ -
sp_hit_id Q9VEC1
Definition sp|Q9VEC1|MED17_DROME Mediator of RNA polymerase II transcription subunit 17 OS=Drosophila melanogaster
Align length 43
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916768|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_D04.
         (415 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VEC1|MED17_DROME Mediator of RNA polymerase II transcriptio...    32   0.76 
sp|Q2RWR8|BCHN_RHORT Light-independent protochlorophyllide reduc...    32   1.00 
sp|Q13261|I15RA_HUMAN Interleukin-15 receptor subunit alpha OS=H...    31   2.2  
sp|Q12756|KIF1A_HUMAN Kinesin-like protein KIF1A OS=Homo sapiens...    30   4.9  
sp|O54991|CNTP1_MOUSE Contactin-associated protein 1 OS=Mus musc...    29   8.4  

>sp|Q9VEC1|MED17_DROME Mediator of RNA polymerase II transcription
           subunit 17 OS=Drosophila melanogaster GN=MED17 PE=1 SV=1
          Length = 642

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 151 TSTPSHNNNECLEGSSQAVLVVPSEFEGIAPVKEVTGRPVFDL 23
           +S+ S NN   L+ SS   ++VP+E +G+A +K +T +   DL
Sbjct: 225 SSSVSGNNGMQLKASSALRVIVPAELQGVAYIKVITQKDQEDL 267


>sp|Q2RWR8|BCHN_RHORT Light-independent protochlorophyllide
           reductase subunit N OS=Rhodospirillum rubrum (strain
           ATCC 11170 / NCIB 8255) GN=bchN PE=3 SV=1
          Length = 440

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +3

Query: 180 LSRLSRLDPDRTLAIPLL-----FILSQPLLSPTASCCKA-GCKETAFKFSLMACIVRGS 341
           ++R + L P R+ A+P +     F+L+QP L  TA C +A G +  A  F      V G+
Sbjct: 215 IARTAFLPPRRSTALPAIGPKTRFLLAQPFLGDTARCLEARGARRLAAPFPFG---VEGT 271

Query: 342 TG 347
           TG
Sbjct: 272 TG 273


>sp|Q13261|I15RA_HUMAN Interleukin-15 receptor subunit alpha OS=Homo
           sapiens GN=IL15RA PE=1 SV=1
          Length = 267

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +3

Query: 150 VLCRPPITEDLSRLSRLDPDRTLAIPLLFILSQPLLSPTASCCKAGCKETAFKFSLMACI 329
           +L RPP T  ++      P  ++    +++ S  L S     C +G K  A   SL  C+
Sbjct: 21  LLLRPPATRGIT----CPPPMSVEHADIWVKSYSLYSRERYICNSGFKRKAGTSSLTECV 76

Query: 330 VRGSTGTHVWVSHSL 374
           +  +T    W + SL
Sbjct: 77  LNKATNVAHWTTPSL 91


>sp|Q12756|KIF1A_HUMAN Kinesin-like protein KIF1A OS=Homo sapiens
            GN=KIF1A PE=2 SV=2
          Length = 1690

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 218  GNTLAFHPLTTIAFPNCFLLQGRLQRD----CLQVLPHGLHRPWLHGHTCLGITLS 373
            G++ A  PL+    P+        QR+    CL++L H  +R + H H C+  + S
Sbjct: 1424 GSSSASSPLSAEGRPSPLEAPNERQRELAVKCLRLLTHTFNREYTHSHVCVSASES 1479


>sp|O54991|CNTP1_MOUSE Contactin-associated protein 1 OS=Mus
           musculus GN=Cntnap1 PE=1 SV=1
          Length = 1385

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 119 TFIIVMTWSRSSVQTSHYRRPFKTFKTRS**NTGNTLAFHPLTTIAFP 262
           T ++V   +RS+ +   + RP + +  R   N+ NT++FH    + FP
Sbjct: 756 TQVVVGDTNRSNSEAQFFLRPLRCYGDR---NSWNTISFHTGAALRFP 800
tr_hit_id Q5CJQ9
Definition tr|Q5CJQ9|Q5CJQ9_CRYHO Putative uncharacterized protein OS=Cryptosporidium hominis
Align length 55
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916768|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_D04.
         (415 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5CJQ9|Q5CJQ9_CRYHO Putative uncharacterized protein OS=Crypt...    34   3.2  
tr|Q9HSV7|Q9HSV7_HALSA Putative uncharacterized protein OS=Halob...    34   4.1  
tr|B0R2I9|B0R2I9_HALS3 Transposase (ISH10) OS=Halobacterium sali...    34   4.1  
tr|B4KCC7|B4KCC7_DROMO GI23722 OS=Drosophila mojavensis GN=GI237...    33   7.1  
tr|B4QUJ0|B4QUJ0_DROSI GD19210 OS=Drosophila simulans GN=GD19210...    33   9.2  
tr|B4PL76|B4PL76_DROYA GE25518 OS=Drosophila yakuba GN=GE25518 P...    33   9.2  
tr|B4JUI1|B4JUI1_DROGR GH15742 OS=Drosophila grimshawi GN=GH1574...    33   9.2  
tr|B4IB96|B4IB96_DROSE GM15283 OS=Drosophila sechellia GN=GM1528...    33   9.2  
tr|B3P0C9|B3P0C9_DROER GG22704 OS=Drosophila erecta GN=GG22704 P...    33   9.2  
tr|O54664|O54664_HALSA Putative uncharacterized protein (Vng6084...    33   9.2  
tr|B0R8G5|B0R8G5_HALS3 Transposase (ISH10) OS=Halobacterium sali...    33   9.2  

>tr|Q5CJQ9|Q5CJQ9_CRYHO Putative uncharacterized protein
           OS=Cryptosporidium hominis GN=Chro.80352 PE=4 SV=1
          Length = 300

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 415 ETNFPRTHVRKDGARECDTQTCVPVEPRTMQAMRENLKAVSLQPALQQEAVGESN 251
           ETN P +  +  G R  +TQ C P++  T    +  LKA+ +    +QE +   N
Sbjct: 137 ETNVPLSPSQVGGKRNKETQICNPIKQNTSNDKKNLLKALKISKKDEQEKLNNQN 191


>tr|Q9HSV7|Q9HSV7_HALSA Putative uncharacterized protein
           OS=Halobacterium salinarium GN=VNG0056H PE=4 SV=1
          Length = 468

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 124 HYCYDLESKFCADLPLQKTFQDFQD*ILIEHWQ-YPCFSSSHNHCFPQLLLVARQVA 291
           H  Y +     +D+P +   +DF   ++ + W  YP FSS+   C+  LL  A  VA
Sbjct: 255 HTLYAVRESRGSDVPAEVLGEDFAGTVICDGWTAYPAFSSTLQRCWAHLLREAEDVA 311


>tr|B0R2I9|B0R2I9_HALS3 Transposase (ISH10) OS=Halobacterium
           salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE1094R
           PE=4 SV=1
          Length = 485

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 124 HYCYDLESKFCADLPLQKTFQDFQD*ILIEHWQ-YPCFSSSHNHCFPQLLLVARQVA 291
           H  Y +     +D+P +   +DF   ++ + W  YP FSS+   C+  LL  A  VA
Sbjct: 272 HTLYAVRESRGSDVPAEVLGEDFAGTVICDGWTAYPAFSSTLQRCWAHLLREAEDVA 328


>tr|B4KCC7|B4KCC7_DROMO GI23722 OS=Drosophila mojavensis GN=GI23722
           PE=4 SV=1
          Length = 647

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 151 TSTPSHNNNECLEGSSQAVLVVPSEFEGIAPVKEVTGRPVFDL 23
           TS+ + NN   L+ SS   ++VP+E +G+A +K +T +   DL
Sbjct: 230 TSSSTTNNGMQLKASSALRVIVPAELQGVAYIKVITQKDQEDL 272


>tr|B4QUJ0|B4QUJ0_DROSI GD19210 OS=Drosophila simulans GN=GD19210
           PE=4 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 151 TSTPSHNNNECLEGSSQAVLVVPSEFEGIAPVKEVTGRPVFDL 23
           +S+ S NN   L+ SS   ++VP+E +G+A +K +T +   DL
Sbjct: 25  SSSTSGNNGMQLKASSALRVIVPAELQGVAYIKVITQKDQEDL 67


>tr|B4PL76|B4PL76_DROYA GE25518 OS=Drosophila yakuba GN=GE25518 PE=4
           SV=1
          Length = 642

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 151 TSTPSHNNNECLEGSSQAVLVVPSEFEGIAPVKEVTGRPVFDL 23
           +S+ S NN   L+ SS   ++VP+E +G+A +K +T +   DL
Sbjct: 225 SSSTSGNNGMQLKASSALRVIVPAELQGVAYIKVITQKDQEDL 267


>tr|B4JUI1|B4JUI1_DROGR GH15742 OS=Drosophila grimshawi GN=GH15742
           PE=4 SV=1
          Length = 648

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -1

Query: 151 TSTPSHNNNECLEGSSQAVLVVPSEFEGIAPVKEVTGRPVFDL 23
           +S  S NN   L+ SS   ++VP+E +G+A +K +T +   DL
Sbjct: 231 SSASSSNNGMQLKASSALRVIVPAELQGVAYIKVITQKDQEDL 273


>tr|B4IB96|B4IB96_DROSE GM15283 OS=Drosophila sechellia GN=GM15283
           PE=4 SV=1
          Length = 642

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 151 TSTPSHNNNECLEGSSQAVLVVPSEFEGIAPVKEVTGRPVFDL 23
           +S+ S NN   L+ SS   ++VP+E +G+A +K +T +   DL
Sbjct: 225 SSSTSGNNGMQLKASSALRVIVPAELQGVAYIKVITQKDQEDL 267


>tr|B3P0C9|B3P0C9_DROER GG22704 OS=Drosophila erecta GN=GG22704 PE=4
           SV=1
          Length = 642

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 151 TSTPSHNNNECLEGSSQAVLVVPSEFEGIAPVKEVTGRPVFDL 23
           +S+ S NN   L+ SS   ++VP+E +G+A +K +T +   DL
Sbjct: 225 SSSTSGNNGMQLKASSALRVIVPAELQGVAYIKVITQKDQEDL 267


>tr|O54664|O54664_HALSA Putative uncharacterized protein (Vng6084h)
           (Vng6442h) OS=Halobacterium salinarium GN=VNG0021H PE=4
           SV=1
          Length = 454

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 124 HYCYDLESKFCADLPLQKTFQDFQD*ILIEHWQ-YPCFSSSHNHCFPQLLLVARQVAKR 297
           H  Y +     +D+P +   +DF   ++ + W  YP FSS+   C+  +L  A   A++
Sbjct: 241 HTLYAVRESRGSDVPAEVLGEDFAGTVICDGWTAYPAFSSNLQRCWAHILREAEDAAEK 299