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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916775
Clone id YMU001_000091_D11
Library
Length 369
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGAGCGTGGTAAGCTGATTGTAGTGAATGTTACCTGAAATAGGAGTTAATGCATATTTC
AGCTCAGTGAATGCTGGTTGCTTTGTTTCTTAACAAAAAAGATTCTCTCTCATTTTATCA
AAGAAAGCACACACATAAAAAGAGTAGAAGTAAATGTCAATGAGAGATTGAATATGCTGC
ATAGTATCCTCCGATTTAGACTGCCCATTACTCCCATCTCCCCAAAGATTGAATGTGTTC
ACATGCCATTGGAGTTTTTATTTCCAGTTCTTTCTTAGGTGACTCTGGTGAAAATGGTGA
ATGAAGCAACTGCAAACATACCATTTTGGGAGGAAGGAAAGTAGATGCACAATGAAAGGT
AAGAGTTGG
■■Homology search results ■■ -
sp_hit_id Q6FK87
Definition sp|Q6FK87|HIR3_CANGA Histone transcription regulator 3 homolog OS=Candida glabrata
Align length 37
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916775|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_D11.
         (369 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FK87|HIR3_CANGA Histone transcription regulator 3 homolog O...    31   2.2  
sp|Q6ICH7|ASPH2_HUMAN Aspartate beta-hydroxylase domain-containi...    30   4.9  
sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6 OS=Mus mu...    29   6.4  

>sp|Q6FK87|HIR3_CANGA Histone transcription regulator 3 homolog
            OS=Candida glabrata GN=HIR3 PE=3 SV=1
          Length = 1615

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 161  IDIYFYSF--YVCAFFDKMRENLFC*ETKQPAFTELK 57
            I I FY+F  Y    F ++ ENL C  T + AFT+LK
Sbjct: 902  ISISFYNFCDYASGNFLQIAENLICQFTNEEAFTQLK 938


>sp|Q6ICH7|ASPH2_HUMAN Aspartate beta-hydroxylase domain-containing
           protein 2 OS=Homo sapiens GN=ASPHD2 PE=2 SV=1
          Length = 369

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 333 PPKMVCLQLLHSPFSPESPKKELE 262
           PP+  CL LLH+P S +SPK  LE
Sbjct: 8   PPRTDCLTLLHTP-SKDSPKMSLE 30


>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6 OS=Mus
           musculus GN=Traf6 PE=1 SV=1
          Length = 530

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 193 DLDCPLLPSPQRLNVFTCH 249
           DLDCP  P P   +VF CH
Sbjct: 232 DLDCPTAPIPCTFSVFGCH 250
tr_hit_id A9S4V9
Definition tr|A9S4V9|A9S4V9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 21
Score (bit) 40.4
E-value 0.044
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916775|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_D11.
         (369 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S4V9|A9S4V9_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.044
tr|Q5NBG3|Q5NBG3_ORYSJ cDNA clone:J013120F01, full insert sequen...    39   0.099
tr|B8ACM7|B8ACM7_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.099
tr|B6T4V2|B6T4V2_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.099
tr|B6TNM5|B6TNM5_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.49 
tr|B4FE97|B4FE97_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.49 
tr|Q0DIJ1|Q0DIJ1_ORYSJ Os05g0386000 protein OS=Oryza sativa subs...    37   0.64 
tr|B8AXT3|B8AXT3_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.64 
tr|A3B3L3|A3B3L3_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.64 
tr|Q5SMK1|Q5SMK1_ORYSJ Putative uncharacterized protein OSJNBb00...    36   0.84 
tr|Q0DE35|Q0DE35_ORYSJ Os06g0180000 protein (Fragment) OS=Oryza ...    36   0.84 
tr|B6TJR1|B6TJR1_MAIZE Putative uncharacterized protein OS=Zea m...    36   0.84 
tr|A3B8Z2|A3B8Z2_ORYSJ Putative uncharacterized protein OS=Oryza...    36   0.84 
tr|A2Y9Z5|A2Y9Z5_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.84 
tr|A9T0B2|A9T0B2_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|Q6FQ67|Q6FQ67_CANGA Strain CBS138 chromosome I complete seque...    36   1.1  
tr|A7Q5E7|A7Q5E7_VITVI Chromosome undetermined scaffold_53, whol...    35   1.4  
tr|A7P603|A7P603_VITVI Chromosome chr4 scaffold_6, whole genome ...    35   1.4  
tr|A5BKG1|A5BKG1_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|Q8W4E6|Q8W4E6_ARATH Putative uncharacterized protein (Putativ...    35   1.9  
tr|Q494Q2|Q494Q2_ARATH At2g25260 OS=Arabidopsis thaliana PE=2 SV=1     35   2.4  
tr|Q9FY51|Q9FY51_ARATH Putative uncharacterized protein T6I14_30...    34   4.2  

>tr|A9S4V9|A9S4V9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_208742 PE=4 SV=1
          Length = 278

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +3

Query: 279 VTLVKMVNEATANIPFWEEGK 341
           VTLVKMVNEATANIP W+EG+
Sbjct: 258 VTLVKMVNEATANIPGWKEGE 278


>tr|Q5NBG3|Q5NBG3_ORYSJ cDNA clone:J013120F01, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0693B08.27 PE=2 SV=1
          Length = 372

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 16/21 (76%), Positives = 20/21 (95%)
 Frame = +3

Query: 279 VTLVKMVNEATANIPFWEEGK 341
           VTLVKMVNEATAN+P W++G+
Sbjct: 352 VTLVKMVNEATANLPGWDDGR 372


>tr|B8ACM7|B8ACM7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01349 PE=4 SV=1
          Length = 210

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 16/21 (76%), Positives = 20/21 (95%)
 Frame = +3

Query: 279 VTLVKMVNEATANIPFWEEGK 341
           VTLVKMVNEATAN+P W++G+
Sbjct: 190 VTLVKMVNEATANLPGWDDGR 210


>tr|B6T4V2|B6T4V2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 364

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +3

Query: 279 VTLVKMVNEATANIPFWEEGK 341
           VTLVKMVNEATANIP WE+ +
Sbjct: 344 VTLVKMVNEATANIPXWEDXR 364


>tr|B6TNM5|B6TNM5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 375

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +3

Query: 279 VTLVKMVNEATANIPFWEEG 338
           VTLVKMVNEA+AN+P W++G
Sbjct: 355 VTLVKMVNEASANLPRWDDG 374


>tr|B4FE97|B4FE97_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 375

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +3

Query: 279 VTLVKMVNEATANIPFWEEG 338
           VTLVKMVNEA+AN+P W++G
Sbjct: 355 VTLVKMVNEASANLPRWDDG 374


>tr|Q0DIJ1|Q0DIJ1_ORYSJ Os05g0386000 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0386000 PE=2 SV=1
          Length = 360

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 282 TLVKMVNEATANIPFWEE 335
           TLVKMVNEATANIP W+E
Sbjct: 341 TLVKMVNEATANIPGWDE 358


>tr|B8AXT3|B8AXT3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19796 PE=4 SV=1
          Length = 360

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 282 TLVKMVNEATANIPFWEE 335
           TLVKMVNEATANIP W+E
Sbjct: 341 TLVKMVNEATANIPGWDE 358


>tr|A3B3L3|A3B3L3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017635 PE=4 SV=1
          Length = 370

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 282 TLVKMVNEATANIPFWEE 335
           TLVKMVNEATANIP W+E
Sbjct: 351 TLVKMVNEATANIPGWDE 368


>tr|Q5SMK1|Q5SMK1_ORYSJ Putative uncharacterized protein
           OSJNBb0019L07.6 (Putative uncharacterized protein
           OSJNBa0035I03.24) OS=Oryza sativa subsp. japonica
           GN=OSJNBb0019L07.6 PE=4 SV=1
          Length = 283

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +3

Query: 279 VTLVKMVNEATANIPFWE 332
           VTLVKMVNEATANIP W+
Sbjct: 261 VTLVKMVNEATANIPNWD 278