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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916780
Clone id YMU001_000091_E06
Library
Length 390
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGTCACTCCCCTGCTATGTAGTCACAGTGGCACGCCTTGCACAAAATCCAACTAGTGCT
GTCTACAAGTCTGACAACACCTGACGAGTCTTAAGGTTGGAGCCAGTGCACCACTTGTAG
GTTCTCACTCTGATCCTGAGGGTGACTCTGATACCTAGGTTGAGGCTGAGTCTTTTGGGC
TAGGACTCGGGAAAGCCCATCACTGACCACCGTCACTGAAAGAAGTCACCCGTACCTAGA
AGTGCCTCTCTAAGACCTCCCTCTGGATGAGTAACCTGAGGGCTGATTACAGCACAAGTT
CGCAGAATTCAACATTGACTCAACCCCGGCACATAACACAATTGCATTAAGAGCTGCTAA
TGCAGAGTTGCTGCTAAAGCTACTGATGAA
■■Homology search results ■■ -
sp_hit_id Q606D6
Definition sp|Q606D6|ILVD_METCA Dihydroxy-acid dehydratase OS=Methylococcus capsulatus
Align length 24
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916780|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_E06.
         (390 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q606D6|ILVD_METCA Dihydroxy-acid dehydratase OS=Methylococcus...    29   6.4  

>sp|Q606D6|ILVD_METCA Dihydroxy-acid dehydratase OS=Methylococcus
           capsulatus GN=ilvD PE=3 SV=1
          Length = 562

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 222 LSVTVVSDGLSRVLAQKTQPQPRY 151
           LS+ V  D + R LAQ TQP PRY
Sbjct: 514 LSLHVTDDEIGRRLAQWTQPAPRY 537
tr_hit_id Q4PC35
Definition tr|Q4PC35|Q4PC35_USTMA Putative uncharacterized protein OS=Ustilago maydis
Align length 50
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916780|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_E06.
         (390 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4PC35|Q4PC35_USTMA Putative uncharacterized protein OS=Ustil...    33   7.1  

>tr|Q4PC35|Q4PC35_USTMA Putative uncharacterized protein OS=Ustilago
            maydis GN=UM02328.1 PE=4 SV=1
          Length = 1789

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 198  GLSRVLAQKTQPQPRYQSHPQD---QSENLQVVHWLQP*DSSGVVRLVDS 58
            G S    Q+ Q QP+ Q HPQ    Q+ NLQ +H L   +  G+  LV +
Sbjct: 1077 GQSSAQVQQPQQQPQQQPHPQQPQQQAANLQALHALVQNNPQGLAALVQA 1126