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NBDC - LSDB Archive
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BP916781
Clone id YMU001_000091_E07
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGAGCCAGATTACTTTTGCCATTGAATAGAAAGCATTCCCCAACCCATGCTCACGCCGAG
CAGATTTGATACATGTACAACTTCATGGGAATAAAATTCTCCACCCAATCAGCAAAACAG
AAACATCTTTCATACTCAATGTTAGTCAGATCATAACATCGGTACTTAACCTCTACCATT
CCCCTGTATAGGCTCCGATTTTGCCAAATTTGTAGCAAATATATCCAAAAGCCTATACTG
GGAATGGGCGTGTCAATCCATAATAGAGACAGCTTATGCCACAATCCTTTCAATATAGTA
CATTGGACCTGTCCTACCTGTTTGGCCACATTTACACCAACATTAGTTCCCCAACGATGG
AGGCAGAAGAGGAGGACGTCCATCCTTGAATTGCCCTGAAGATCTTCTAAATGACCCTGA
GAAATGTGGCGCCTCCATTTGCCCAAACCTTCTACTGTGTATGCG
■■Homology search results ■■ -
sp_hit_id P38172
Definition sp|P38172|YBJ5_YEAST Uncharacterized protein YBL095W OS=Saccharomyces cerevisiae
Align length 66
Score (bit) 33.5
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916781|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_E07.
         (465 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38172|YBJ5_YEAST Uncharacterized protein YBL095W OS=Saccharo...    33   0.46 
sp|Q8TUF8|PRIL_METAC Probable DNA primase large subunit OS=Metha...    32   1.3  
sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein ...    32   1.3  
sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protei...    32   1.3  
sp|B0JSV5|NDHK_MICAN NAD(P)H-quinone oxidoreductase subunit K OS...    32   1.8  
sp|Q8S3N1|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5 OS=Arab...    32   1.8  
sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protei...    31   2.3  
sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3 OS=Arab...    31   2.3  
sp|Q9STT7|ATH4_ARATH Putative ABC2 homolog 4 OS=Arabidopsis thal...    31   3.0  
sp|Q9BXR5|TLR10_HUMAN Toll-like receptor 10 OS=Homo sapiens GN=T...    30   3.9  
sp|Q9STN8|SINA4_ARATH E3 ubiquitin-protein ligase SINAT4 OS=Arab...    30   4.0  
sp|Q8PX26|PRIL_METMA Probable DNA primase large subunit OS=Metha...    30   6.7  
sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125 OS=Mus ...    30   6.8  
sp|Q9NS91|RAD18_HUMAN E3 ubiquitin-protein ligase RAD18 OS=Homo ...    29   8.9  
sp|Q980L7|ATGT_SULSO 7-cyano-7-deazaguanine tRNA-ribosyltransfer...    29   8.9  

>sp|P38172|YBJ5_YEAST Uncharacterized protein YBL095W
           OS=Saccharomyces cerevisiae GN=YBL095W PE=1 SV=1
          Length = 270

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -2

Query: 440 KWRRHISQGHLED--LQGNSRMDVLLFCL-HRWGTNVGVNVAKQVGQVQCTILKGLWHKL 270
           K R+ I +GHLE   L+ +SR     + L H WG N    +AK+  +  C +++  W K 
Sbjct: 204 KGRKCIIEGHLEQFPLEVSSRNGTRSWNLPHIWGFNHKQEMAKKFAKANCILVEPTWFKY 263

Query: 269 SLLWID 252
              W+D
Sbjct: 264 -FKWLD 268


>sp|Q8TUF8|PRIL_METAC Probable DNA primase large subunit
           OS=Methanosarcina acetivorans GN=priB PE=3 SV=1
          Length = 371

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +3

Query: 18  AIE*KAFPNPCSRRADLIHVQLHGNKILHPISKTETSFILNVSQIITSVLNLYH 179
           A+E + FP PC   A L +VQ  G  + H +    TSF+LNV   +  +LNL++
Sbjct: 221 AVEPELFP-PCISHA-LANVQ-GGVNLAHSMRFAMTSFLLNVGMSVEEILNLFN 271


>sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein 1,
           mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1
          Length = 739

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -2

Query: 335 VNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRC 156
           V V K +GQ     LK  +H   LLWIDT I +   W  L      R   R  + +   C
Sbjct: 146 VVVKKSLGQKILDELKHYYHGFRLLWIDTKIAARMLWRILNGHTLTRRERRQFLRI---C 202

Query: 155 YDLTNIEYERCFCFADWVENFIPMKLYMY 69
            DL  +     F    ++E  +P+ + ++
Sbjct: 203 ADLFRLVPFLVFVVVPFMEFLLPVVVKLF 231


>sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protein
           1, mitochondrial OS=Homo sapiens GN=LETM1 PE=1 SV=1
          Length = 739

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -2

Query: 335 VNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRC 156
           V V K +GQ     LK  +H   LLWIDT I +   W  L      R   R  + +   C
Sbjct: 147 VVVKKSLGQRVLDELKHYYHGFRLLWIDTKIAARMLWRILNGHSLTRRERRQFLRI---C 203

Query: 155 YDLTNIEYERCFCFADWVENFIPMKLYMY 69
            DL  +     F    ++E  +P+ + ++
Sbjct: 204 ADLFRLVPFLVFVVVPFMEFLLPVAVKLF 232


>sp|B0JSV5|NDHK_MICAN NAD(P)H-quinone oxidoreductase subunit K
           OS=Microcystis aeruginosa (strain NIES-843) GN=ndhK PE=3
           SV=1
          Length = 247

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +3

Query: 39  PNPCSRRADLIHVQLHGNKILHPISKTETSFILNVSQIITSVLNLYH 179
           PNP S    +I  Q    KIL+PI +T+ +  L+ + I+T+V +LY+
Sbjct: 3   PNPTSEFKQIIEQQ--SEKILNPIERTKVTQDLSENVILTTVDDLYN 47


>sp|Q8S3N1|SINA5_ARATH E3 ubiquitin-protein ligase SINAT5
           OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2
          Length = 309

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 184 LYRLRFCQICSKYIQKPILGMGVSIHNRDSLCHNPFNIVHWTCPTC 321
           +Y L  C +C+  +  PI       HN  +LC    + VH  CPTC
Sbjct: 40  VYELLECPVCTNSMYPPIH----QCHNGHTLCSTCKSRVHNRCPTC 81


>sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protein
           1, mitochondrial OS=Mus musculus GN=Letm1 PE=2 SV=1
          Length = 738

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 24/89 (26%), Positives = 38/89 (42%)
 Frame = -2

Query: 335 VNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRC 156
           V V K +GQ     L+  +H   LLWIDT I +   W  L      R   R  + +   C
Sbjct: 146 VVVRKSLGQKVLDELRHYYHGFRLLWIDTKIAARMLWRILNGHTLTRRERRQFLRI---C 202

Query: 155 YDLTNIEYERCFCFADWVENFIPMKLYMY 69
            DL  +     F    ++E  +P+ + ++
Sbjct: 203 ADLFRLVPFLVFVVVPFMEFLLPVVVKLF 231


>sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3
           OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1
          Length = 326

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 166 LTSTIPLYRLRFCQICSKYIQKPILGMGVSIHNRDSLCHNPFNIVHWTCPTC 321
           L +T  ++ L  C +C+  +  PI       HN  +LC      VH  CPTC
Sbjct: 51  LPTTTSVHELLECPVCTNSMYPPIH----QCHNGHTLCSTCKARVHNRCPTC 98


>sp|Q9STT7|ATH4_ARATH Putative ABC2 homolog 4 OS=Arabidopsis
           thaliana GN=ATH4 PE=3 SV=1
          Length = 664

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = -2

Query: 425 ISQGHLEDLQGNSRMDVLLFC--LHRWGTNVGVNVAKQVGQVQCTILKGLWHKLSLLWID 252
           +S  +LE LQG+    +  F   + +  T + + +A  +G +  T +  L     L  + 
Sbjct: 206 VSNAYLEFLQGSGTKMLFDFVKEMPKQETRLRLEMASLIGPIFFTWVILLLFPFLLEGLS 265

Query: 251 TPIPSIGFWIYLLQIWQNRSLYRGMVE 171
            P      WIY+++++   SLYRG+ E
Sbjct: 266 FPRS----WIYIMELYPGFSLYRGLYE 288


>sp|Q9BXR5|TLR10_HUMAN Toll-like receptor 10 OS=Homo sapiens
           GN=TLR10 PE=1 SV=2
          Length = 811

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 116 NRNIFHTQC*SDHNIGT*--PLPFPCIGSDFAKFVANISKSLYWEW 247
           + N+FH    SDH I     P+PF CI + + K  A + K  Y EW
Sbjct: 714 HHNLFHEN--SDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLEW 757
tr_hit_id Q5ZK33
Definition tr|Q5ZK33|Q5ZK33_CHICK Putative uncharacterized protein OS=Gallus gallus
Align length 87
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916781|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_E07.
         (465 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5ZK33|Q5ZK33_CHICK Putative uncharacterized protein OS=Gallu...    34   4.1  
tr|Q187D4|Q187D4_CLOD6 Putative O-acetylhomoserine sulfhydrylase...    34   4.1  
tr|B5VDP8|B5VDP8_YEAS6 YBL095Wp-like protein OS=Saccharomyces ce...    33   5.4  
tr|B3LNM6|B3LNM6_YEAS1 Putative uncharacterized protein OS=Sacch...    33   5.4  
tr|A6ZKK8|A6ZKK8_YEAS7 Conserved protein OS=Saccharomyces cerevi...    33   5.4  
tr|B7FII4|B7FII4_MEDTR Putative uncharacterized protein OS=Medic...    33   5.5  
tr|B7FFI8|B7FFI8_MEDTR Putative uncharacterized protein OS=Medic...    33   5.5  
tr|A8W461|A8W461_MEDTR SINA2 OS=Medicago truncatula PE=2 SV=1          33   5.5  
tr|B7SMC2|B7SMC2_9HEMI NADH dehydrogenase subunit 4 OS=Geocoris ...    33   7.0  
tr|B8MHC1|B8MHC1_9EURO Cell cycle control protein (Cwf22), putat...    33   7.0  
tr|B6QMR1|B6QMR1_PENMA Cell cycle control protein (Cwf22), putat...    33   7.0  
tr|A7Q7P3|A7Q7P3_VITVI Chromosome chr18 scaffold_61, whole genom...    33   9.1  
tr|A5BYN5|A5BYN5_VITVI Putative uncharacterized protein OS=Vitis...    33   9.1  

>tr|Q5ZK33|Q5ZK33_CHICK Putative uncharacterized protein OS=Gallus
           gallus GN=RCJMB04_13i11 PE=2 SV=1
          Length = 752

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/87 (28%), Positives = 38/87 (43%)
 Frame = -2

Query: 329 VAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRCYD 150
           V K +GQ     LK  +H   LLWIDT I +   W  L     +R   R  + +   C D
Sbjct: 146 VKKSIGQRIVDELKHYYHGFRLLWIDTKIAARMLWRILHGNTLSRRERRQFLRI---CAD 202

Query: 149 LTNIEYERCFCFADWVENFIPMKLYMY 69
           L  +     F    ++E  +P+ L ++
Sbjct: 203 LFRLVPFLVFLVVPFMEFLLPVALKLF 229


>tr|Q187D4|Q187D4_CLOD6 Putative O-acetylhomoserine sulfhydrylase
           OS=Clostridium difficile (strain 630) GN=cysD PE=3 SV=1
          Length = 421

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/38 (47%), Positives = 28/38 (73%), Gaps = 6/38 (15%)
 Frame = +3

Query: 285 SFQYSTLD-LSYLF-----GHIYTNISSPTMEAEEEDV 380
           +F+YS++D L+ LF     GHIY+ IS+PT++A EE +
Sbjct: 30  TFKYSSIDQLAELFDLKVDGHIYSRISNPTIQAFEEKI 67


>tr|B5VDP8|B5VDP8_YEAS6 YBL095Wp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_20110 PE=4 SV=1
          Length = 270

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -2

Query: 440 KWRRHISQGHLED--LQGNSRMDVLLFCL-HRWGTNVGVNVAKQVGQVQCTILKGLWHKL 270
           K R+ I +GHLE   L+ +SR     + L H WG N    +AK+  +  C +++  W K 
Sbjct: 204 KGRKCIIEGHLEQFPLEVSSRNGTRSWNLPHIWGFNHKQEMAKKFAKANCILVEPTWFKY 263

Query: 269 SLLWID 252
              W+D
Sbjct: 264 -FKWLD 268


>tr|B3LNM6|B3LNM6_YEAS1 Putative uncharacterized protein
           OS=Saccharomyces cerevisiae (strain RM11-1a)
           GN=SCRG_03053 PE=4 SV=1
          Length = 270

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -2

Query: 440 KWRRHISQGHLED--LQGNSRMDVLLFCL-HRWGTNVGVNVAKQVGQVQCTILKGLWHKL 270
           K R+ I +GHLE   L+ +SR     + L H WG N    +AK+  +  C +++  W K 
Sbjct: 204 KGRKCIIEGHLEQFPLEVSSRNGTRSWNLPHIWGFNHKQEMAKKFAKANCILVEPTWFKY 263

Query: 269 SLLWID 252
              W+D
Sbjct: 264 -FKWLD 268


>tr|A6ZKK8|A6ZKK8_YEAS7 Conserved protein OS=Saccharomyces
           cerevisiae (strain YJM789) GN=SCY_0128 PE=4 SV=1
          Length = 270

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -2

Query: 440 KWRRHISQGHLED--LQGNSRMDVLLFCL-HRWGTNVGVNVAKQVGQVQCTILKGLWHKL 270
           K R+ I +GHLE   L+ +SR     + L H WG N    +AK+  +  C +++  W K 
Sbjct: 204 KGRKCIIEGHLEQFPLEVSSRNGTRSWNLPHIWGFNHKQEMAKKFAKANCILVEPTWFKY 263

Query: 269 SLLWID 252
              W+D
Sbjct: 264 -FKWLD 268


>tr|B7FII4|B7FII4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 323

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 106 QSAKQKHLSYSMLVRS*HRYLTSTIPLYRLRFCQICSKYIQKPILGMGVSIHNRDSLCHN 285
           + A+  H  +S + +  +   T+T  ++ L  C +C+  +  PI       HN  +LC N
Sbjct: 33  EEAEHHHHQFSSISKLLNNAPTTT-SVHDLLECPVCTNSMYPPIH----QCHNGHTLCSN 87

Query: 286 PFNIVHWTCPTC 321
               VH  CPTC
Sbjct: 88  CKTRVHNRCPTC 99


>tr|B7FFI8|B7FFI8_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 178

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 106 QSAKQKHLSYSMLVRS*HRYLTSTIPLYRLRFCQICSKYIQKPILGMGVSIHNRDSLCHN 285
           + A+  H  +S + +  +   T+T  ++ L  C +C+  +  PI       HN  +LC N
Sbjct: 33  EEAEHHHHQFSSISKLLNNAPTTT-SVHDLLECPVCTNSMYPPIH----QCHNGHTLCSN 87

Query: 286 PFNIVHWTCPTC 321
               VH  CPTC
Sbjct: 88  CKTRVHNRCPTC 99


>tr|A8W461|A8W461_MEDTR SINA2 OS=Medicago truncatula PE=2 SV=1
          Length = 323

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 106 QSAKQKHLSYSMLVRS*HRYLTSTIPLYRLRFCQICSKYIQKPILGMGVSIHNRDSLCHN 285
           + A+  H  +S + +  +   T+T  ++ L  C +C+  +  PI       HN  +LC N
Sbjct: 33  EEAEHHHHQFSSISKLLNNAPTTT-SVHDLLECPVCTNSMYPPIH----QCHNGHTLCSN 87

Query: 286 PFNIVHWTCPTC 321
               VH  CPTC
Sbjct: 88  CKTRVHNRCPTC 99


>tr|B7SMC2|B7SMC2_9HEMI NADH dehydrogenase subunit 4 OS=Geocoris
           pallidipennis GN=ND4 PE=4 SV=1
          Length = 438

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
 Frame = -2

Query: 281 WHKLSLLWID-TPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRCYDLTNIEYERCFCFADW 105
           W  LS +++  T   S G+ IYL  I Q+ SLY G+   K+ CY   N+       F  W
Sbjct: 368 WSNLSFVFLGLTSFFSCGYSIYLYSITQHGSLYSGL---KFNCYG--NVREFNLIMF-HW 421

Query: 104 VE-NFIPMKLYMYQI 63
           +  NF+ MK  ++ +
Sbjct: 422 IPLNFLFMKSEIFSL 436


>tr|B8MHC1|B8MHC1_9EURO Cell cycle control protein (Cwf22), putative
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_021570 PE=4
           SV=1
          Length = 798

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = -2

Query: 362 LHRWGTNVGVNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYR 183
           +HR+ TN   N+A+  G +      G WH LSL+ ++    +    I++  ++Q+ + + 
Sbjct: 509 IHRYETNRLRNIARFFGHILSNDAIG-WHVLSLIHLNEEETTSSSRIFIKILFQDLAEHM 567

Query: 182 GMVEVKYRCYD 150
           GM ++K R  D
Sbjct: 568 GMAKLKERLTD 578