NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916782
Clone id YMU001_000091_E08
Library
Length 348
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTGTCTCTCCCTCTCTCTCATTCTTTTAAAATATTCTCTCCAAGAGCATAGAGCTTGGC
TTACATTGCCTTGAGAAAAAAACTTTTATGTTTCCATGTCATTGCAACAAAACCTTATAT
GATACATTTGGTATCAATTGATTTAGTATGCCAATGTGTGGTTTTCGTAACCACTTCATA
CAAGAGTGCAGCAAAGCTGCTTGGCCATGCTATTTTCGCTGGCAAGAAATGTACAGTAAG
AAGCGTGGAAAGAAGGGCATCCGTATTAGCAATTAGATGGACCAAGCACCCCTAATATAG
GCCCCGACAATATCCCCAATGTTAAGTCGAATAAAATCAATTTGCCAC
■■Homology search results ■■ -
sp_hit_id Q8X5I6
Definition sp|Q8X5I6|TAUB_ECO57 Taurine import ATP-binding protein tauB OS=Escherichia coli O157:H7
Align length 26
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916782|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_E08.
         (348 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8X5I6|TAUB_ECO57 Taurine import ATP-binding protein tauB OS=...    30   2.8  
sp|Q9HX79|TAUB_PSEAE Taurine import ATP-binding protein tauB OS=...    30   3.7  
sp|Q02SA6|TAUB_PSEAB Taurine import ATP-binding protein tauB OS=...    30   3.7  
sp|Q675B8|TR117_RAT Taste receptor type 2 member 117 OS=Rattus n...    30   4.8  
sp|Q48IB9|SSUB1_PSE14 Aliphatic sulfonates import ATP-binding pr...    30   4.8  
sp|Q54I92|PSII_DICDI Protein psiI OS=Dictyostelium discoideum GN...    30   4.8  
sp|Q664P8|TAUB_YERPS Taurine import ATP-binding protein tauB OS=...    29   6.3  
sp|Q1CCR9|TAUB_YERPN Taurine import ATP-binding protein tauB OS=...    29   6.3  
sp|Q8ZJD0|TAUB_YERPE Taurine import ATP-binding protein tauB OS=...    29   6.3  
sp|Q1C2S1|TAUB_YERPA Taurine import ATP-binding protein tauB OS=...    29   6.3  
sp|Q881U6|SSUB2_PSESM Aliphatic sulfonates import ATP-binding pr...    29   6.3  
sp|Q3Z542|TAUB_SHISS Taurine import ATP-binding protein tauB OS=...    29   8.3  
sp|Q83MA0|TAUB_SHIFL Taurine import ATP-binding protein tauB OS=...    29   8.3  
sp|Q0T7M2|TAUB_SHIF8 Taurine import ATP-binding protein tauB OS=...    29   8.3  
sp|Q32IZ6|TAUB_SHIDS Taurine import ATP-binding protein tauB OS=...    29   8.3  
sp|Q325N3|TAUB_SHIBS Taurine import ATP-binding protein tauB OS=...    29   8.3  
sp|Q1RFH8|TAUB_ECOUT Taurine import ATP-binding protein tauB OS=...    29   8.3  
sp|Q47538|TAUB_ECOLI Taurine import ATP-binding protein tauB OS=...    29   8.3  
sp|Q8FKF5|TAUB_ECOL6 Taurine import ATP-binding protein tauB OS=...    29   8.3  
sp|Q0TKS1|TAUB_ECOL5 Taurine import ATP-binding protein tauB OS=...    29   8.3  
sp|P19056|RCEH_RHOCA Reaction center protein H chain OS=Rhodobac...    29   8.3  

>sp|Q8X5I6|TAUB_ECO57 Taurine import ATP-binding protein tauB
           OS=Escherichia coli O157:H7 GN=tauB PE=3 SV=1
          Length = 255

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 346 GKLILFDLTLGILSGPILGVLGPSNC 269
           GK +L D+ L + SG +L VLGPS C
Sbjct: 13  GKPVLEDINLTLESGELLVVLGPSGC 38


>sp|Q9HX79|TAUB_PSEAE Taurine import ATP-binding protein tauB
           OS=Pseudomonas aeruginosa GN=tauB PE=3 SV=1
          Length = 263

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 343 KLILFDLTLGILSGPILGVLGPSNC 269
           + IL DL+LG+  G  L VLGPS C
Sbjct: 20  RAILRDLSLGLAKGESLVVLGPSGC 44


>sp|Q02SA6|TAUB_PSEAB Taurine import ATP-binding protein tauB
           OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tauB
           PE=3 SV=1
          Length = 263

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 343 KLILFDLTLGILSGPILGVLGPSNC 269
           + IL DL+LG+  G  L VLGPS C
Sbjct: 20  RAILRDLSLGLAKGESLVVLGPSGC 44


>sp|Q675B8|TR117_RAT Taste receptor type 2 member 117 OS=Rattus
           norvegicus GN=Tas2r117 PE=3 SV=1
          Length = 318

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 209 HGQAALLHSCMKWLRKPHIGILNQLIPNVSYKVLLQ 102
           +G  AL+H CM WLR+  I ++NQ++  ++   + Q
Sbjct: 31  NGFMALVH-CMDWLRRKKISLVNQILTALAISRIFQ 65


>sp|Q48IB9|SSUB1_PSE14 Aliphatic sulfonates import ATP-binding
           protein ssuB 1 OS=Pseudomonas syringae pv. phaseolicola
           (strain 1448A / Race 6) GN=ssuB1 PE=3 SV=1
          Length = 237

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 346 GKLILFDLTLGILSGPILGVLGPSNC 269
           G  +L D+ L + SG I+ +LGPS C
Sbjct: 17  GNTVLQDIDLSLQSGEIVSLLGPSGC 42


>sp|Q54I92|PSII_DICDI Protein psiI OS=Dictyostelium discoideum
           GN=psiI PE=3 SV=1
          Length = 719

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = +2

Query: 86  LCFHVIATKPYMIHLVSID---LVCQCVVFVTTSYKSA-----AKLLGHAIFAGKK 229
           +C +  AT+P     V  D    +CQ    V+T+  ++     A +LG AIFAGKK
Sbjct: 626 VCVNATATEPGKCKSVDYDPKPFICQTGAIVSTAVVASVVVVGAVVLGAAIFAGKK 681


>sp|Q664P8|TAUB_YERPS Taurine import ATP-binding protein tauB
           OS=Yersinia pseudotuberculosis GN=tauB PE=3 SV=1
          Length = 255

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 346 GKLILFDLTLGILSGPILGVLGPSNC 269
           GK  L D++L I SG ++ VLGPS C
Sbjct: 13  GKPALQDVSLQIASGQLVVVLGPSGC 38


>sp|Q1CCR9|TAUB_YERPN Taurine import ATP-binding protein tauB
           OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tauB
           PE=3 SV=1
          Length = 255

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 346 GKLILFDLTLGILSGPILGVLGPSNC 269
           GK  L D++L I SG ++ VLGPS C
Sbjct: 13  GKPALQDVSLQIASGQLVVVLGPSGC 38


>sp|Q8ZJD0|TAUB_YERPE Taurine import ATP-binding protein tauB
           OS=Yersinia pestis GN=tauB PE=3 SV=1
          Length = 255

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 346 GKLILFDLTLGILSGPILGVLGPSNC 269
           GK  L D++L I SG ++ VLGPS C
Sbjct: 13  GKPALQDVSLQIASGQLVVVLGPSGC 38


>sp|Q1C2S1|TAUB_YERPA Taurine import ATP-binding protein tauB
           OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tauB
           PE=3 SV=1
          Length = 255

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 346 GKLILFDLTLGILSGPILGVLGPSNC 269
           GK  L D++L I SG ++ VLGPS C
Sbjct: 13  GKPALQDVSLQIASGQLVVVLGPSGC 38
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916782|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_E08.
         (348 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******