BP916784
Clone id YMU001_000091_E10
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAGTTGAGTGGGGATTGCTTTTGGTTTGTACTGATAACCTGGTAATTATCCTTCTTGTTT
AGCAGGTATAGCTCAACATAGAGTTGTCTTGGCTGATGTTGTATACCTCAGCATAAGGTT
GTCCGTTCAGTTTGGCATGAGTTGGTTTTCCGAGAAATACCTTGGGCTGTTTTGTAGAGA
AGTTACATTTCGGATGTGTACTTTATGCAGGTTTGCGGAAGTGACAACTCAGTTTCGCTT
CCTCCGAGGCTTGCTAGAGTTCTACACTAATCTCTTTTGCTCCAATTGGGCCTTGACCTA
AGGCTCCCTTAACCTGGTATAAAGGCACATTTACCAGTTATGTTGCTGATATGGGGTTGT
TGTAGGTTTGTACTAATTACCTGGTGTGTAGATGTTTAGTGTGGCAATTATAGCTAAGCT
TTTGGTTCTCTCGGCTAATGTTGTATACCTTTGCATATATGGTTGTATATGTTCTTGTTT
ATTGGATGTCTATTGAGCTAATGACTCCTCGATACAA
■■Homology search results ■■ -
sp_hit_id Q4FLQ2
Definition sp|Q4FLQ2|Y1082_PELUB UPF0078 membrane protein SAR11_1082 OS=Pelagibacter ubique
Align length 40
Score (bit) 30.4
E-value 5.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916784|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_E10.
(517 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4FLQ2|Y1082_PELUB UPF0078 membrane protein SAR11_1082 OS=Pel... 30 5.2
sp|P26403|RFBN_SALTY O antigen biosynthesis rhamnosyltransferase... 30 8.7

>sp|Q4FLQ2|Y1082_PELUB UPF0078 membrane protein SAR11_1082
OS=Pelagibacter ubique GN=SAR11_1082 PE=3 SV=1
Length = 191

Score = 30.4 bits (67), Expect = 5.2
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1

Query: 31 LITW*LSFLFSRYSST*SCLG*CCIPQHKVVRSVWHELVF 150
+I+W ++FL S+YSS S +G +P + +V ++ + F
Sbjct: 123 IISWAVTFLISKYSSLSSLVGSLMVPMYLIVFENYNSIFF 162


>sp|P26403|RFBN_SALTY O antigen biosynthesis rhamnosyltransferase
rfbN OS=Salmonella typhimurium GN=rfbN PE=3 SV=1
Length = 314

Score = 29.6 bits (65), Expect = 8.7
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3

Query: 420 FWFSRLMLYTFAYMVVYVL-VYWMSIELMTPRY 515
FW R +L TFA + Y L +W S+ L T RY
Sbjct: 262 FWIPRALLTTFAKFLGYKLGKHWQSLPLSTCRY 294


tr_hit_id A0ESB0
Definition tr|A0ESB0|A0ESB0_MARFA Pancreatic ribonuclease (Fragment) OS=Martes flavigula
Align length 57
Score (bit) 34.3
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916784|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_E10.
(517 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0ESB0|A0ESB0_MARFA Pancreatic ribonuclease (Fragment) OS=Mar... 34 3.8

>tr|A0ESB0|A0ESB0_MARFA Pancreatic ribonuclease (Fragment) OS=Martes
flavigula GN=RNASE1 PE=3 SV=1
Length = 140

Score = 34.3 bits (77), Expect = 3.8
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1

Query: 334 VNVPLYQVKGALGQGPIGAKEISVEL*QASEEAKLS-CHFRKPA*STHPKCNFSTKQ 167
++ PL V+ QG + K Q+S + +++ CH +K S +PKC++ TKQ
Sbjct: 74 IHQPLPDVRAVCSQGNVPCKNRQSNCHQSSSKMRITDCHLKKG--SKYPKCDYETKQ 128