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NBDC - LSDB Archive
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BP916814
Clone id YMU001_000091_H10
Library
Length 327
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000091_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGCAGAACCTGCTGAATAGTAAAACTCCTCTGCAAATTGAGAAGACTCTCTCTCTTGCG
AACCCTCAATAGTGCCTATTGTAAGAGACACCTATGATGGAATCACCAAGGGTGTCCTGA
GGCAACTCAGGCTAATCCAAAACTGCCACCGACTACTAGTCCGCGTGCTCTATCCCTTTG
TCCACCTACGCTAAAATCTCCTCTTGATCTTGCAATAGTACCCTCTCCTCAAGAGGTTTG
TCTTGGGCTGCTTTGCCTCATCCAACCTCTATCTCGCTACCTATCTATAAACAAGGATAG
ATTGTGCCTATCCCTACCTACCTACTA
■■Homology search results ■■ -
sp_hit_id Q1DLC7
Definition sp|Q1DLC7|NTE1_COCIM Lysophospholipase NTE1 OS=Coccidioides immitis
Align length 50
Score (bit) 32.3
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916814|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_H10.
         (327 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1DLC7|NTE1_COCIM Lysophospholipase NTE1 OS=Coccidioides immi...    32   0.77 
sp|Q5TCM9|LCE5A_HUMAN Late cornified envelope protein 5A OS=Homo...    31   2.2  
sp|Q69ZS7|HBS1L_MOUSE HBS1-like protein OS=Mus musculus GN=Hbs1l...    30   2.9  
sp|O15027|SC16A_HUMAN Protein transport protein Sec16A OS=Homo s...    30   3.8  
sp|Q5TA79|LCE2A_HUMAN Late cornified envelope protein 2A OS=Homo...    30   3.8  
sp|Q6ZUB1|CI079_HUMAN FAM75-like protein C9orf79 OS=Homo sapiens...    30   5.0  
sp|A1AX17|MNMA_RUTMC tRNA-specific 2-thiouridylase mnmA OS=Ruthi...    29   6.5  
sp|Q4WXD3|SLD2_ASPFU DNA replication regulator sld2 OS=Aspergill...    29   6.5  
sp|O13637|SEC31_SCHPO Protein transport protein sec31 OS=Schizos...    29   6.5  
sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2 OS=Arabi...    29   6.5  
sp|P02340|P53_MOUSE Cellular tumor antigen p53 OS=Mus musculus G...    29   8.5  
sp|Q9R123|NAT6_MOUSE N-acetyltransferase 6 OS=Mus musculus GN=Na...    29   8.5  
sp|Q64733|FOXB2_MOUSE Forkhead box protein B2 OS=Mus musculus GN...    29   8.5  

>sp|Q1DLC7|NTE1_COCIM Lysophospholipase NTE1 OS=Coccidioides immitis
           GN=NTE1 PE=3 SV=2
          Length = 1569

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +2

Query: 74  AYCKRHL*WNHQGCPEATQA----NPKLPPTTSPRALSLCPPTLKSPLDL 211
           ++C  H  WN    P + Q     +P LPP     A+S CPP   SP +L
Sbjct: 42  SHCPTHA-WNPDPPPSSLQPVFSFSPSLPPPCPSPAISSCPPNTLSPPNL 90


>sp|Q5TCM9|LCE5A_HUMAN Late cornified envelope protein 5A OS=Homo
           sapiens GN=LCE5A PE=2 SV=1
          Length = 118

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +2

Query: 101 NHQGCPEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVCLG 247
           + Q C    +  PK PP  +P+    CPP    P   A  P P   C G
Sbjct: 6   SQQQCQPPPKCTPKCPPKCTPKCPPKCPPKC-PPQCSAPCPPPVSSCCG 53


>sp|Q69ZS7|HBS1L_MOUSE HBS1-like protein OS=Mus musculus GN=Hbs1l
           PE=1 SV=2
          Length = 682

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +2

Query: 104 HQGCP--EATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSP 229
           H+G P  + + A+P +P T +P++ +L PP+L++  +L   P+P
Sbjct: 190 HKGPPGDDVSVASPNIPETGTPKS-ALPPPSLQTSEELGSTPTP 232


>sp|O15027|SC16A_HUMAN Protein transport protein Sec16A OS=Homo
            sapiens GN=SEC16A PE=1 SV=3
          Length = 2179

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 98   WNHQGCPEATQANPKLPPTTSPRALSLCPPTLKSP 202
            W +   PE  +  P  PPT+ P+ +   PP L  P
Sbjct: 1962 WVNLNEPEEEKKAPPPPPTSMPKTVQAAPPALPGP 1996


>sp|Q5TA79|LCE2A_HUMAN Late cornified envelope protein 2A OS=Homo
           sapiens GN=LCE2A PE=2 SV=1
          Length = 106

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +2

Query: 101 NHQGCPEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVC 241
           N Q C    +  PK PP   P+    CP     P+     PS    C
Sbjct: 6   NQQQCQPPPKCPPKCPPKCPPKCRPQCPAPCPPPVSSCCGPSSGGCC 52


>sp|Q6ZUB1|CI079_HUMAN FAM75-like protein C9orf79 OS=Homo sapiens
           GN=C9orf79 PE=2 SV=2
          Length = 1445

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +2

Query: 116 PEATQANPKLPPTTSPRAL----SLCPPTLKSPLDLAIVPSPQEVCLGLLCLIQPL 271
           P    A+   PP +S   L    + CP    SPL   ++P P  V  GL C   P+
Sbjct: 248 PHGPLASSPPPPDSSLAGLQCGSTTCPVPQSSPLHNQVLPPPTRVISGLGCSSDPI 303


>sp|A1AX17|MNMA_RUTMC tRNA-specific 2-thiouridylase mnmA OS=Ruthia
           magnifica subsp. Calyptogena magnifica GN=mnmA PE=3 SV=1
          Length = 363

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -1

Query: 183 GQRDRARGLVVGGSFGLA*VASGHPW*FHHRCLLQ*ALLRVRKRESLL 40
           GQR   +GL +GG FG     SG PW    +C+ +  L+ V+   +LL
Sbjct: 242 GQR---KGLKIGGGFG----KSGEPWFVADKCIERNELMIVQGNHALL 282


>sp|Q4WXD3|SLD2_ASPFU DNA replication regulator sld2 OS=Aspergillus
           fumigatus GN=sld2 PE=3 SV=1
          Length = 535

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 101 NHQGCPEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQE--VCLGLLCLI 262
           N       +Q +P + PT   R  S  P T ++PL  AI P+PQ     LGL  L+
Sbjct: 113 NRLSSSHPSQVDPYISPTALRRLFS--PSTHRTPLKTAIGPTPQRDGKALGLFDLL 166


>sp|O13637|SEC31_SCHPO Protein transport protein sec31
            OS=Schizosaccharomyces pombe GN=sec31 PE=1 SV=1
          Length = 1224

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 143  LPPTTSPRALSLCPPTLKSPLDLAIVPS 226
            LPPT S RA +  PPT+  P   A+ PS
Sbjct: 1022 LPPTASQRASAYEPPTVSVPSPSALSPS 1049


>sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2
           OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1
          Length = 468

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 128 QANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVC 241
           +++P  PPT+S     LCP  L +P D+A     Q  C
Sbjct: 408 RSSPVPPPTSSASDNQLCPICLSNPKDMAFGCGHQTCC 445
tr_hit_id Q6P6X8
Definition tr|Q6P6X8|Q6P6X8_DANRE Asxl1 protein (Fragment) OS=Danio rerio
Align length 42
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916814|Adiantum capillus-veneris mRNA, clone:
YMU001_000091_H10.
         (327 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6P6X8|Q6P6X8_DANRE Asxl1 protein (Fragment) OS=Danio rerio G...    34   3.2  
tr|A7NGH9|A7NGH9_ROSCS FAD dependent oxidoreductase OS=Roseiflex...    33   5.4  
tr|A8YEJ5|A8YEJ5_MICAE Genome sequencing data, contig C299 OS=Mi...    33   9.2  
tr|Q4PA50|Q4PA50_USTMA Putative uncharacterized protein OS=Ustil...    33   9.2  

>tr|Q6P6X8|Q6P6X8_DANRE Asxl1 protein (Fragment) OS=Danio rerio
           GN=Asxl1 PE=2 SV=1
          Length = 1632

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 116 PEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVC 241
           P +  +NP LP + SP+ L+L PP   SP   A     +E+C
Sbjct: 779 PSSVSSNPSLPSSESPKILALSPPATDSP---ASQDQVEEIC 817


>tr|A7NGH9|A7NGH9_ROSCS FAD dependent oxidoreductase OS=Roseiflexus
           castenholzii (strain DSM 13941 / HLO8) GN=Rcas_0435 PE=4
           SV=1
          Length = 347

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +2

Query: 104 HQGCPEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVCLGL-LCLIQPLSR- 277
           H G  +A    P  P T    A+S   PTL+  L   ++  P   CL L L   +P+ R 
Sbjct: 153 HAGTADAVLLTPPAPQTAEILAMSEFDPTLRDALVRELIRVPYRRCLTLTLAYDRPIERP 212

Query: 278 -YLSINKDR 301
            Y  +N DR
Sbjct: 213 FYALVNVDR 221


>tr|A8YEJ5|A8YEJ5_MICAE Genome sequencing data, contig C299
           OS=Microcystis aeruginosa PCC 7806 GN=IPF_2590 PE=4 SV=1
          Length = 246

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +2

Query: 110 GCPEATQANPKLP-----PTTSPRALSLCPPTLKSPLDLAIVPSPQEVCLGLLCLIQPLS 274
           GCP + QAN   P     PT SP   +  PP   +P   A  P+   +  GL+    P  
Sbjct: 19  GCPASDQANQSPPITQETPTPSPSPPAAQPPAFSNPRQPATEPATLRI-PGLIPATDPDQ 77

Query: 275 RYLSINKDR 301
           +   IN+ R
Sbjct: 78  KRAEINRGR 86


>tr|Q4PA50|Q4PA50_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM03013.1 PE=4 SV=1
          Length = 1404

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 116 PEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVCLGLLCLIQPLS 274
           P A  +   LP T SP  +++ P    + L + I  SP+   LG  C  +PL+
Sbjct: 38  PSAAASANGLPETPSPLKVAVTPQETLNDLRVTITDSPEGYWLGAFCFRKPLA 90