BP916816 |
Clone id |
YMU001_000092_A01 |
Library |
YMU01 |
Length |
509 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000092_A01. |
Accession |
BP916816 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1932Contig1 |
Sequence |
ACTCAACTTCAAATCTTCAATGCTCATTACCTTAAGTCTCACAAAATTCCATTGAGTGCT GAAAAAGACTCAAAACCATCTCAAAGTTCAGACGATGATTATCGGGAAACCTAGAAAACC TCCTGATTCATTCATAAAATTGTCACACACTTGGCAACGTTTGAGAAGCCCTTGCTTAGA GCTCGCGGTGTATATTACAAGCTACCGTTCTCGCTCGATATTCCAATCTGACACTGAGGC TTCAATCAGTTTTTTAAAAGAGCGGAGACTACTTACCTTTCCAAGTTTCCTTTTACTTTC TCCTTGAGAAACTGTTCAATGTGTTCTTTCTTCCAGTTGTCAATCCTGATAGTTTCTTTA TTATTGCCATCTTCATCCAGCATTATGAGTTCGGGAGGAGAGCCATATCGGTATTGGACT TTTATATGCAGATACTTTGGCAAGTCATCTTCAATAAATGACTGCACATTTGGGTAAAAG ACCAGCTTTCTCATGCAGACCTCCAAAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q923V8 |
Definition |
sp|Q923V8|SEP15_RAT 15 kDa selenoprotein OS=Rattus norvegicus |
Align length |
74 |
Score (bit) |
63.2 |
E-value |
7.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916816|Adiantum capillus-veneris mRNA, clone: YMU001_000092_A01. (509 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q923V8|SEP15_RAT 15 kDa selenoprotein OS=Rattus norvegicus GN... 63 7e-10 sp|A1Z623|SEP15_PIG 15 kDa selenoprotein OS=Sus scrofa GN=SEP15 ... 63 7e-10 sp|Q9ERR7|SEP15_MOUSE 15 kDa selenoprotein OS=Mus musculus GN=Se... 63 7e-10 sp|O60613|SEP15_HUMAN 15 kDa selenoprotein OS=Homo sapiens GN=SE... 63 7e-10 sp|Q802F3|SEP15_DANRE 15 kDa selenoprotein OS=Danio rerio GN=sep... 63 7e-10 sp|A8YXY3|SEP15_BOVIN 15 kDa selenoprotein OS=Bos taurus GN=SEP1... 63 9e-10 sp|Q6X4M2|SEP15_ONCMY 15 kDa selenoprotein OS=Oncorhynchus mykis... 60 8e-09 sp|Q6GP98|SELM_XENLA Selenoprotein M OS=Xenopus laevis GN=sepm P... 41 0.004 sp|O64404|TPSD4_ABIGR Delta-selinene synthase OS=Abies grandis G... 35 0.16 sp|Q8WWX9|SELM_HUMAN Selenoprotein M OS=Homo sapiens GN=SELM PE=... 34 0.46 sp|Q802G7|SELM_DANRE Selenoprotein M OS=Danio rerio GN=sepm PE=2... 32 1.7 sp|P44085|Y966_HAEIN Uncharacterized protein HI0966 OS=Haemophil... 32 2.3 sp|O27612|GLNA_METTH Glutamine synthetase OS=Methanobacterium th... 30 5.0 sp|Q96JH7|VCIP1_HUMAN Deubiquitinating protein VCIP135 OS=Homo s... 30 6.6 sp|Q866Y3|PGRP2_PIG N-acetylmuramoyl-L-alanine amidase OS=Sus sc... 30 6.6
>sp|Q923V8|SEP15_RAT 15 kDa selenoprotein OS=Rattus norvegicus GN=Sep15 PE=1 SV=3 Length = 162
Score = 63.2 bits (152), Expect = 7e-10 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Frame = -1
Query: 509 ILEVCMRKLVFYPNVQSFIEDDLPKYLH-IKVQYRYGSPPELIMLDEDGNNKETIRIDNW 333 ILEVC KL +P VQ+F+ D PK ++++Y GS P L +LD++GN E + I W Sbjct: 87 ILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKW 146
Query: 332 KKEHIEQFLKEKVK 291 + +E+FL EK++ Sbjct: 147 NTDSVEEFLSEKLE 160
>sp|A1Z623|SEP15_PIG 15 kDa selenoprotein OS=Sus scrofa GN=SEP15 PE=2 SV=2 Length = 162
Score = 63.2 bits (152), Expect = 7e-10 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Frame = -1
Query: 509 ILEVCMRKLVFYPNVQSFIEDDLPKYLH-IKVQYRYGSPPELIMLDEDGNNKETIRIDNW 333 ILEVC KL +P VQ+F+ D PK ++++Y GS P L +LD++GN E + I W Sbjct: 87 ILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKW 146
Query: 332 KKEHIEQFLKEKVK 291 + +E+FL EK++ Sbjct: 147 NTDSVEEFLSEKLQ 160
>sp|Q9ERR7|SEP15_MOUSE 15 kDa selenoprotein OS=Mus musculus GN=Sep15 PE=1 SV=3 Length = 162
Score = 63.2 bits (152), Expect = 7e-10 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Frame = -1
Query: 509 ILEVCMRKLVFYPNVQSFIEDDLPKYLH-IKVQYRYGSPPELIMLDEDGNNKETIRIDNW 333 ILEVC KL +P VQ+F+ D PK ++++Y GS P L +LD++GN E + I W Sbjct: 87 ILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKW 146
Query: 332 KKEHIEQFLKEKVK 291 + +E+FL EK++ Sbjct: 147 NTDSVEEFLSEKLE 160
>sp|O60613|SEP15_HUMAN 15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3 Length = 162
Score = 63.2 bits (152), Expect = 7e-10 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Frame = -1
Query: 509 ILEVCMRKLVFYPNVQSFIEDDLPKYLH-IKVQYRYGSPPELIMLDEDGNNKETIRIDNW 333 ILEVC KL +P VQ+F+ D PK ++++Y GS P L +LD++GN E + I W Sbjct: 87 ILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKW 146
Query: 332 KKEHIEQFLKEKVK 291 + +E+FL EK++ Sbjct: 147 NTDSVEEFLSEKLE 160
>sp|Q802F3|SEP15_DANRE 15 kDa selenoprotein OS=Danio rerio GN=sep15 PE=2 SV=2 Length = 153
Score = 63.2 bits (152), Expect = 7e-10 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Frame = -1
Query: 509 ILEVCMRKLVFYPNVQSFIEDDLPKYLH-IKVQYRYGSPPELIMLDEDGNNKETIRIDNW 333 ILEVC KL +P VQ+F+ D PK ++++Y GS P L +LD++GN E + I W Sbjct: 78 ILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKW 137
Query: 332 KKEHIEQFLKEKVK 291 + +E+FL EK++ Sbjct: 138 NTDSVEEFLSEKLE 151
>sp|A8YXY3|SEP15_BOVIN 15 kDa selenoprotein OS=Bos taurus GN=SEP15 PE=2 SV=2 Length = 162
Score = 62.8 bits (151), Expect = 9e-10 Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Frame = -1
Query: 509 ILEVCMRKLVFYPNVQSFIEDDLPK-YLHIKVQYRYGSPPELIMLDEDGNNKETIRIDNW 333 ILEVC KL +P VQ+F+ D PK + ++++Y GS P L +LD+ GN E + I W Sbjct: 87 ILEVCGUKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDSGNIAEELSILKW 146
Query: 332 KKEHIEQFLKEKVK 291 + +E+FL EK++ Sbjct: 147 NTDSVEEFLSEKLE 160
>sp|Q6X4M2|SEP15_ONCMY 15 kDa selenoprotein OS=Oncorhynchus mykiss GN=sep15 PE=2 SV=2 Length = 157
Score = 59.7 bits (143), Expect = 8e-09 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Frame = -1
Query: 509 ILEVCMRKLVFYPNVQSFIEDDLPK-YLHIKVQYRYGSPPELIMLDEDGNNKETIRIDNW 333 ILEVC KL +P VQ+F+ D PK + ++++Y G+ P L +LD++GN E I W Sbjct: 78 ILEVCGUKLGRFPQVQAFVRSDKPKMFKGLQIKYVRGADPILKLLDDNGNIAEEPSILKW 137
Query: 332 KKEHIEQFLKEKVK 291 + +E+FL EK++ Sbjct: 138 NTDSVEEFLSEKLE 151
>sp|Q6GP98|SELM_XENLA Selenoprotein M OS=Xenopus laevis GN=sepm PE=2 SV=2 Length = 136
Score = 40.8 bits (94), Expect = 0.004 Identities = 17/56 (30%), Positives = 35/56 (62%) Frame = -1
Query: 467 VQSFIEDDLPKYLHIKVQYRYGSPPELIMLDEDGNNKETIRIDNWKKEHIEQFLKE 300 V+ F+ +DLP Y ++++++ G+ PEL+++ E I + + K++ I Q LK+ Sbjct: 49 VKGFVTEDLPLYHNLEMKHIPGADPELVLITSRYEELERIPLSDMKRDEINQLLKD 104
>sp|O64404|TPSD4_ABIGR Delta-selinene synthase OS=Abies grandis GN=ag4 PE=1 SV=1 Length = 581
Score = 35.4 bits (80), Expect = 0.16 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Frame = -1
Query: 455 IEDDLPKYLHIKVQYRYGSPPELI--MLDEDGNNKETIRIDNWKKEHIEQFLKE 300 + DDLP Y+ I Q+ + + ELI ++ G + TI D WK+ +IE +L+E Sbjct: 357 LTDDLPDYIKIAFQFFFNTVNELIVEIVKRQGRDMTTIVKDCWKR-YIESYLQE 409
>sp|Q8WWX9|SELM_HUMAN Selenoprotein M OS=Homo sapiens GN=SELM PE=2 SV=3 Length = 145
Score = 33.9 bits (76), Expect = 0.46 Identities = 15/56 (26%), Positives = 31/56 (55%) Frame = -1
Query: 467 VQSFIEDDLPKYLHIKVQYRYGSPPELIMLDEDGNNKETIRIDNWKKEHIEQFLKE 300 V++F+ D+P Y ++ +++ G+ PEL++L E I + +E I ++E Sbjct: 56 VKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELERIPLSEMTREEINALVQE 111
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NZ18 |
Definition |
tr|A9NZ18|A9NZ18_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
74 |
Score (bit) |
120.0 |
E-value |
5.0e-26 |
Report |
|