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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916817
Clone id YMU001_000092_A03
Library
Length 256
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACTTAGTGAGAATATCTGGAGGATTATCGTGTGTCTTGACCTTGGTCAGTGTGACAAGGC
CATCATCCAATACCTGTGGTATAAAATGGTACCGCACATCAATGTGTTTGGTACGAGCAT
GGAACATGGCATTCTTAGCCAGGTATACAGCACTCTGACTATCACAACCAAGCACTGGAG
CATATGCAGGAAGACCAAAGTCTCTGACCAAGCTGCCAAGCCAAATAGCTTCCTTAGAAG
CCTCTGTGGCTGAAAT
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 85
Score (bit) 97.4
E-value 2.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916817|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_A03.
         (256 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    97   2e-20
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    56   6e-08
sp|Q9Y337|KLK5_HUMAN Kallikrein-5 OS=Homo sapiens GN=KLK5 PE=1 SV=1    32   0.74 
sp|Q9C0V5|YOM1_SCHPO Uncharacterized protein PB7E8.01 OS=Schizos...    32   0.97 
sp|Q9Y5K2|KLK4_HUMAN Kallikrein-4 OS=Homo sapiens GN=KLK4 PE=1 SV=1    30   4.8  
sp|Q9JKU1|TR119_RAT Taste receptor type 2 member 119 OS=Rattus n...    29   8.2  
sp|A2QY50|ATG4_ASPNC Probable cysteine protease atg4 OS=Aspergil...    29   8.2  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 45/85 (52%), Positives = 64/85 (75%)
 Frame = -1

Query: 256  ISATEASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIP 77
            I+ATE  KE IWL   +++ GL     V+ CDSQSA+ L+KN+M+HARTKHIDVRYH+I 
Sbjct: 1225 IAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIR 1284

Query: 76   QVLDDGLVTLTKVKTHDNPPDILTK 2
            +++DD  + + K+ T++NP D+LTK
Sbjct: 1285 EMVDDESLKVLKISTNENPADMLTK 1309


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -1

Query: 244  EASKEAIWLGSLVRDFGLPAYAPV-LGCDSQSAVYLAKNAMFHARTKHIDVRYHFIPQVL 68
            EA +EA+WL  L+    +    P+ +  D+Q  + +A N   H R KHID++YHF  + +
Sbjct: 1303 EAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQV 1362

Query: 67   DDGLVTLTKVKTHDNPPDILTK 2
             + ++ L  + T +   DI TK
Sbjct: 1363 QNNVICLEYIPTENQLADIFTK 1384


>sp|Q9Y337|KLK5_HUMAN Kallikrein-5 OS=Homo sapiens GN=KLK5 PE=1 SV=1
          Length = 293

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 120 MLVPNTLMCGTILYHRYWMMALSH*PRSRHTIILQIFSLS 1
           +L PN L CG +L H  W++  +H  +    + L  +SLS
Sbjct: 85  LLRPNQLYCGAVLVHPQWLLTAAHCRKKVFRVRLGHYSLS 124


>sp|Q9C0V5|YOM1_SCHPO Uncharacterized protein PB7E8.01
           OS=Schizosaccharomyces pombe GN=SPBPB7E8.01 PE=2 SV=1
          Length = 569

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 256 ISATEASKEAIWLGSLV--RDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHF 83
           I A EA ++AI  G LV   D G+  Y+P +  DS    + + +++ H    H D   +F
Sbjct: 353 IQANEAYRKAINPGRLVIYPDAGIDTYSPFIYLDSSYVPFSSGSSLSHVALHHYDCEPNF 412

Query: 82  I 80
           +
Sbjct: 413 L 413


>sp|Q9Y5K2|KLK4_HUMAN Kallikrein-4 OS=Homo sapiens GN=KLK4 PE=1 SV=1
          Length = 254

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -2

Query: 123 SMLVPNTLMCGTILYHRYWMMALSH*PRSRHTIILQIFSL 4
           ++++ N L C  +L H  W+++ +H  ++ +TI L + SL
Sbjct: 47  ALVMENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSL 86


>sp|Q9JKU1|TR119_RAT Taste receptor type 2 member 119 OS=Rattus
           norvegicus GN=Tas2r119 PE=1 SV=1
          Length = 335

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 219 LAAWSETLVFLHMLQCLVVIVRVLYTWLRMPCSMLVPNTLMCGTILY 79
           L+ W  T + +     +  I   L+ WL+M  S LVP  L+ G++LY
Sbjct: 91  LSLWFATWLGVFYCAKIATIPHPLFLWLKMRISRLVP-WLILGSVLY 136


>sp|A2QY50|ATG4_ASPNC Probable cysteine protease atg4
          OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
          GN=atg4 PE=3 SV=1
          Length = 404

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 35 LDLGQCDKAIIQYLW 79
          +D+G+C K I+QYLW
Sbjct: 4  VDIGRCSKRIVQYLW 18
tr_hit_id Q94FM1
Definition tr|Q94FM1|Q94FM1_CITPA Pol polyprotein OS=Citrus paradisi
Align length 85
Score (bit) 99.4
E-value 8.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916817|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_A03.
         (256 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q94FM1|Q94FM1_CITPA Pol polyprotein OS=Citrus paradisi GN=pol...    99   8e-20
tr|Q9SH77|Q9SH77_ARATH Putative retroelement pol polyprotein OS=...    99   1e-19
tr|A5AQ94|A5AQ94_VITVI Putative uncharacterized protein OS=Vitis...    98   2e-19
tr|Q0ZCC2|Q0ZCC2_POPTR CCHC-type integrase OS=Populus trichocarp...    98   2e-19
tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase ...    97   3e-19
tr|Q9M1F5|Q9M1F5_ARATH Copia-like polyprotein OS=Arabidopsis tha...    96   1e-18
tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-co...    92   1e-17
tr|Q2QPE3|Q2QPE3_ORYSJ Retrotransposon protein, putative, Ty1-co...    92   1e-17
tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein O...    92   1e-17
tr|A5BT02|A5BT02_VITVI Putative uncharacterized protein OS=Vitis...    92   2e-17
tr|Q01M93|Q01M93_ORYSA OSIGBa0146N20.7 protein OS=Oryza sativa G...    91   3e-17
tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE...    91   4e-17
tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    89   8e-17
tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    89   8e-17
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    89   8e-17
tr|Q7XTM9|Q7XTM9_ORYSJ OSJNBa0033G05.13 protein OS=Oryza sativa ...    89   1e-16
tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4...    89   1e-16
tr|Q5GA69|Q5GA69_SOLLC Putative polyprotein OS=Solanum lycopersi...    89   1e-16
tr|Q2RAY7|Q2RAY7_ORYSJ Retrotransposon protein, putative, Ty1-co...    89   1e-16
tr|Q9ZRJ0|Q9ZRJ0_TOBAC Retrotransposon Tto1 DNA OS=Nicotiana tab...    88   2e-16
tr|A5BPE6|A5BPE6_VITVI Putative uncharacterized protein OS=Vitis...    88   2e-16
tr|A5BE52|A5BE52_VITVI Putative uncharacterized protein OS=Vitis...    88   2e-16
tr|A5B4I5|A5B4I5_VITVI Putative uncharacterized protein OS=Vitis...    88   2e-16
tr|Q9SZY0|Q9SZY0_ARATH Putative retrotransposon OS=Arabidopsis t...    88   2e-16
tr|Q9FFM0|Q9FFM0_ARATH Copia-like retrotransposable element OS=A...    88   2e-16
tr|Q7X670|Q7X670_ORYSJ OSJNBa0093P23.9 protein OS=Oryza sativa s...    88   2e-16
tr|Q01MJ3|Q01MJ3_ORYSA OSIGBa0105O19.1 protein OS=Oryza sativa G...    88   2e-16
tr|O81903|O81903_ARATH Putative transposable element OS=Arabidop...    88   2e-16
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul...    88   2e-16
tr|Q6L4X8|Q6L4X8_ORYSJ Putative polyprotein OS=Oryza sativa subs...    87   3e-16

>tr|Q94FM1|Q94FM1_CITPA Pol polyprotein OS=Citrus paradisi GN=pol
           PE=4 SV=1
          Length = 297

 Score = 99.4 bits (246), Expect = 8e-20
 Identities = 46/85 (54%), Positives = 63/85 (74%)
 Frame = -1

Query: 256 ISATEASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIP 77
           I+ATEA KEAIWL  L+ D G+      + CD+QSA++LAKN  +HARTKHIDV+YH++ 
Sbjct: 193 IAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQTYHARTKHIDVKYHYVR 252

Query: 76  QVLDDGLVTLTKVKTHDNPPDILTK 2
           ++++ G V L K+ T DNP D+LTK
Sbjct: 253 EIIEGGDVLLKKIDTKDNPSDMLTK 277


>tr|Q9SH77|Q9SH77_ARATH Putative retroelement pol polyprotein
            OS=Arabidopsis thaliana GN=At2g07550 PE=2 SV=1
          Length = 1356

 Score = 98.6 bits (244), Expect = 1e-19
 Identities = 46/85 (54%), Positives = 60/85 (70%)
 Frame = -1

Query: 256  ISATEASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIP 77
            +S TEA KEAIWL  L++DFG    +  + CDSQSA+ L+KN + H RTKHIDV+YHFI 
Sbjct: 1253 MSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIR 1312

Query: 76   QVLDDGLVTLTKVKTHDNPPDILTK 2
            +++ DG V + K+ T  NP DI TK
Sbjct: 1313 EIISDGTVEVLKISTEKNPADIFTK 1337


>tr|A5AQ94|A5AQ94_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_017821 PE=4 SV=1
          Length = 939

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 45/85 (52%), Positives = 61/85 (71%)
 Frame = -1

Query: 256  ISATEASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIP 77
            ++A EA+KEA+WL  LV + G+   +  + CDSQSA+ L KN  FH RTKHIDVR+HFI 
Sbjct: 836  VAAAEATKEALWLKGLVSELGMNQKSVTVFCDSQSALCLTKNQGFHERTKHIDVRFHFIR 895

Query: 76   QVLDDGLVTLTKVKTHDNPPDILTK 2
             + + GLV ++K+ T DNP D+LTK
Sbjct: 896  DIAEQGLVNVSKISTKDNPADMLTK 920


>tr|Q0ZCC2|Q0ZCC2_POPTR CCHC-type integrase OS=Populus trichocarpa
           PE=2 SV=1
          Length = 353

 Score = 97.8 bits (242), Expect = 2e-19
 Identities = 45/85 (52%), Positives = 62/85 (72%)
 Frame = -1

Query: 256 ISATEASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIP 77
           ++ TEA KEAIWL  L+ D G+      + CDSQSA+ LAKN + H+RTKHIDVR+HF+ 
Sbjct: 1   MAVTEAFKEAIWLHGLIEDLGIVQEHVDVHCDSQSAICLAKNQVHHSRTKHIDVRFHFVR 60

Query: 76  QVLDDGLVTLTKVKTHDNPPDILTK 2
           +++D+G + L K+ T DNP D+LTK
Sbjct: 61  EIVDEGDILLQKIGTADNPADMLTK 85


>tr|Q7M1E4|Q7M1E4_ARATH Retrovirus-related reverse transcriptase
           homolog (Fragment) OS=Arabidopsis thaliana PE=4 SV=1
          Length = 112

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 45/85 (52%), Positives = 64/85 (75%)
 Frame = -1

Query: 256 ISATEASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIP 77
           I+ATE  KE IWL   +++ GL     V+ CDSQSA+ L+KN+M+HARTKHIDVRYH+I 
Sbjct: 9   IAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIR 68

Query: 76  QVLDDGLVTLTKVKTHDNPPDILTK 2
           +++DD  + + K+ T++NP D+LTK
Sbjct: 69  EMVDDESLKVLKISTNENPADMLTK 93


>tr|Q9M1F5|Q9M1F5_ARATH Copia-like polyprotein OS=Arabidopsis thaliana
            GN=F9K21.100 PE=4 SV=1
          Length = 1363

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 45/85 (52%), Positives = 60/85 (70%)
 Frame = -1

Query: 256  ISATEASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIP 77
            +S TEA KEAIWL  L++DFG       + CDSQSA+ L+KN + H RTKHIDV++HFI 
Sbjct: 1260 MSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHERTKHIDVKFHFIR 1319

Query: 76   QVLDDGLVTLTKVKTHDNPPDILTK 2
            +++ DG V ++K+ T  NP DI TK
Sbjct: 1320 EIIADGKVEVSKISTEKNPADIFTK 1344


>tr|Q2QQ81|Q2QQ81_ORYSJ Retrotransposon protein, putative, Ty1-copia
            subclass OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g31920 PE=4 SV=1
          Length = 1333

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 41/81 (50%), Positives = 55/81 (67%)
 Frame = -1

Query: 244  EASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIPQVLD 65
            EA KE IWL  L  +         L CDSQSA+YL K+ MFH RTKHID++YHF+  V++
Sbjct: 1235 EACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIE 1294

Query: 64   DGLVTLTKVKTHDNPPDILTK 2
            +G + + K+ THDNP D++TK
Sbjct: 1295 EGKLKVCKISTHDNPADMMTK 1315


>tr|Q2QPE3|Q2QPE3_ORYSJ Retrotransposon protein, putative, Ty1-copia
            subclass OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g34770 PE=4 SV=1
          Length = 1333

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 41/81 (50%), Positives = 55/81 (67%)
 Frame = -1

Query: 244  EASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIPQVLD 65
            EA KE IWL  L  +         L CDSQSA+YL K+ MFH RTKHID++YHF+  V++
Sbjct: 1235 EACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIE 1294

Query: 64   DGLVTLTKVKTHDNPPDILTK 2
            +G + + K+ THDNP D++TK
Sbjct: 1295 EGKLKVCKISTHDNPADMMTK 1315


>tr|O82196|O82196_ARATH Copia-like retroelement pol polyprotein
            OS=Arabidopsis thaliana GN=At2g19840 PE=2 SV=1
          Length = 1137

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 43/85 (50%), Positives = 59/85 (69%)
 Frame = -1

Query: 256  ISATEASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIP 77
            ++ T+ +KEAIWL   V + G       + CDSQSA+ LAKNA++H RTKHIDV+YHFI 
Sbjct: 1034 MALTDGAKEAIWLKGHVSELGFVQKTVNIHCDSQSAIALAKNAVYHERTKHIDVKYHFIR 1093

Query: 76   QVLDDGLVTLTKVKTHDNPPDILTK 2
             ++++G V + K+ T DNP DI TK
Sbjct: 1094 DLVNNGEVQVLKIDTEDNPADIFTK 1118


>tr|A5BT02|A5BT02_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020397 PE=4 SV=1
          Length = 215

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 43/85 (50%), Positives = 60/85 (70%)
 Frame = -1

Query: 256 ISATEASKEAIWLGSLVRDFGLPAYAPVLGCDSQSAVYLAKNAMFHARTKHIDVRYHFIP 77
           ++  EA KE++WL  LV++ G+      L CDSQSA+YLAKN ++HARTKHIDVR+H I 
Sbjct: 112 MAIAEAGKESLWLTGLVKELGIQQGGVQLYCDSQSAIYLAKNQVYHARTKHIDVRFHKIK 171

Query: 76  QVLDDGLVTLTKVKTHDNPPDILTK 2
           +++  G + L KV T +N  D+LTK
Sbjct: 172 ELVSSGELLLEKVHTSENAADMLTK 196