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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916820
Clone id YMU001_000092_B01
Library
Length 576
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCACAGCTATCTCTCCTTGTAATACAGCAGTAGCGTTACCAACAGACTCAACATCTTGCG
TACTTGCCTCAGTAGCATCAATATGTAGCTCCTCAGAGGCAAGCTTTTCTGCCTTCTGTA
GAGCTATCTCAGCAATGCAAACCCTCTGTGCAGCATCAACTTCTACTGCAACTGCCTGTT
CAGCTAGAGACATTATTCGAGTAACCTCTTCGTCAGCTTTGATAGCAATTTCTCTTGCCA
CCTTTGCAGCTTCTGCCAATTCTATAACCTCCTTCTGCAACTCCGACTTCGAGTCTGCGG
AGCGCATAAGCTCAGTTTCATATTGAGTTACTGCAAGCCTAAAAGCCTTTAACTCTGCCT
CAGCAGCATCTAGTTCTTCTTCTTCCTTTGACAATGTAGAAGCTTCATTTTCTGACTCTC
CACTTACATCACCAGCAGCACCAATACTTTCCAAAGCCTCGAGCTCTGCAGAAGAATCTC
GTGAAACAAACGCTGATGCACCCTCGACAACATTTTCTAGCTCCGCTTGGGCAAAATCAG
GCAAACTACTTGACCCAGCTTCTTTTGCTTGCTTCA
■■Homology search results ■■ -
sp_hit_id A5ILG0
Definition sp|A5ILG0|MUTS_THEP1 DNA mismatch repair protein mutS OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
Align length 45
Score (bit) 31.6
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916820|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_B01.
         (576 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5ILG0|MUTS_THEP1 DNA mismatch repair protein mutS OS=Thermot...    32   3.0  

>sp|A5ILG0|MUTS_THEP1 DNA mismatch repair protein mutS OS=Thermotoga
           petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
           GN=mutS PE=3 SV=1
          Length = 793

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -3

Query: 325 QYETELMRSADSKSELQKEVIE-LAEAAKVAREIAIKADEEVTRI 194
           ++ET++M + +   EL+KE+ + + E  K  +EI +K  EE+ +I
Sbjct: 485 EFETKIMAAKERIEELEKELFKNVCEEVKKHKEILLKISEELAKI 529
tr_hit_id Q9LQ77
Definition tr|Q9LQ77|Q9LQ77_ARATH T1N6.20 protein OS=Arabidopsis thaliana
Align length 154
Score (bit) 53.5
E-value 8.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916820|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_B01.
         (576 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LQ77|Q9LQ77_ARATH T1N6.20 protein OS=Arabidopsis thaliana G...    54   8e-06
tr|Q7XPW1|Q7XPW1_ORYSJ Os04g0682800 protein OS=Oryza sativa subs...    49   3e-04
tr|Q259F9|Q259F9_ORYSA H0124B04.17 protein OS=Oryza sativa GN=H0...    49   3e-04
tr|B8ARS2|B8ARS2_ORYSI Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|A3AYR9|A3AYR9_ORYSJ Putative uncharacterized protein OS=Oryza...    49   3e-04
tr|A9RVH0|A9RVH0_PHYPA Predicted protein (Fragment) OS=Physcomit...    48   4e-04
tr|A7PZ88|A7PZ88_VITVI Chromosome chr15 scaffold_40, whole genom...    46   0.001
tr|A9VKJ9|A9VKJ9_BACWK Cell divisionFtsK/SpoIIIE OS=Bacillus wei...    38   0.45 
tr|A5KAV6|A5KAV6_PLAVI Merozoite surface protein 3 (MSP3), putat...    37   1.0  
tr|O65273|O65273_ARATH F6N23.14 protein (Putative uncharacterize...    36   1.3  
tr|A5KAV8|A5KAV8_PLAVI Merozoite surface protein 3 (MSP3), putat...    35   3.8  
tr|A0L7N9|A0L7N9_MAGSM Putative uncharacterized protein OS=Magne...    34   6.5  

>tr|Q9LQ77|Q9LQ77_ARATH T1N6.20 protein OS=Arabidopsis thaliana
           GN=T1N6.20 PE=4 SV=1
          Length = 526

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 47/154 (30%), Positives = 66/154 (42%), Gaps = 2/154 (1%)
 Frame = -3

Query: 463 LEALESIGAAGDVSGESENEASTLSXXXXXXXXXXXXXXAFRLAVT--QYETELMRSADS 290
           +E+LE+ GA  D+   SE    T+                    V     E++L      
Sbjct: 229 VESLEA-GAGNDIPHVSEETEETIDVNDKEEALLAAKDDIKECQVNLDNCESQLSALLSK 287

Query: 289 KSELQKEVIELAEAAKVAREIAIKADEEVTRIMSLXXXXXXXXXXXXXXVCIAEIALQKA 110
           K ELQKEV +L E A+  +  ++KA+E+VT IM L              V  AEIALQ+A
Sbjct: 288 KDELQKEVDKLNEFAETIQISSLKAEEDVTNIMKLAEQAVAFELEATQRVNDAEIALQRA 347

Query: 109 EKLASEELHIDATEASTQDVESVGNATAVLQGEI 8
           EK  S     + T+    D E+      VL G +
Sbjct: 348 EKSLSISQTPEETQGQLSDEETSQEDAMVLSGNV 381


>tr|Q7XPW1|Q7XPW1_ORYSJ Os04g0682800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0032F06.20 PE=2 SV=2
          Length = 1154

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
 Frame = -3

Query: 334 AVTQYETELMRSADSKSELQKEVIELAEAAKVAREIAIKADEEVTRIMSLXXXXXXXXXX 155
           ++++ E EL R  + K ELQKEV  L E A+ A   A KA+E+V  IM L          
Sbjct: 243 SLSKCEEELRRIQEKKMELQKEVDRLTELAERALLDASKAEEDVANIMVLAEQAVALEME 302

Query: 154 XXXXVCIAEIALQKAEKLASE-----ELHIDATEASTQDVESV 41
                  AE+ALQKAEK  S      EL   A E  + + ++V
Sbjct: 303 AAQRANDAELALQKAEKAISSVDAVVELPAPAEEQVSDEEDNV 345


>tr|Q259F9|Q259F9_ORYSA H0124B04.17 protein OS=Oryza sativa
            GN=H0124B04.17 PE=3 SV=1
          Length = 2505

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
 Frame = -3

Query: 334  AVTQYETELMRSADSKSELQKEVIELAEAAKVAREIAIKADEEVTRIMSLXXXXXXXXXX 155
            ++++ E EL R  + K ELQKEV  L E A+ A   A KA+E+V  IM L          
Sbjct: 1569 SLSKCEEELRRIQEKKMELQKEVDRLTELAERALLDASKAEEDVANIMVLAEQAVALEME 1628

Query: 154  XXXXVCIAEIALQKAEKLASE-----ELHIDATEASTQDVESV 41
                   AE+ALQKAEK  S      EL   A E  + + ++V
Sbjct: 1629 AAQRANDAELALQKAEKAISSVDAVVELPAPAEEQVSDEEDNV 1671


>tr|B8ARS2|B8ARS2_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_17972 PE=4 SV=1
          Length = 2246

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
 Frame = -3

Query: 334  AVTQYETELMRSADSKSELQKEVIELAEAAKVAREIAIKADEEVTRIMSLXXXXXXXXXX 155
            ++++ E EL R  + K ELQKEV  L E A+ A   A KA+E+V  IM L          
Sbjct: 1335 SLSKCEEELRRIQEKKMELQKEVDRLTELAERALLDASKAEEDVANIMVLAEQAVALEME 1394

Query: 154  XXXXVCIAEIALQKAEKLASE-----ELHIDATEASTQDVESV 41
                   AE+ALQKAEK  S      EL   A E  + + ++V
Sbjct: 1395 AAQRANDAELALQKAEKAISSVDAVVELPAPAEEQVSDEEDNV 1437


>tr|A3AYR9|A3AYR9_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_015941 PE=3 SV=1
          Length = 2351

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
 Frame = -3

Query: 334  AVTQYETELMRSADSKSELQKEVIELAEAAKVAREIAIKADEEVTRIMSLXXXXXXXXXX 155
            ++++ E EL R  + K ELQKEV  L E A+ A   A KA+E+V  IM L          
Sbjct: 1419 SLSKCEEELRRIQEKKMELQKEVDRLTELAERALLDASKAEEDVANIMVLAEQAVALEME 1478

Query: 154  XXXXVCIAEIALQKAEKLASE-----ELHIDATEASTQDVESV 41
                   AE+ALQKAEK  S      EL   A E  + + ++V
Sbjct: 1479 AAQRANDAELALQKAEKAISSVDAVVELPAPAEEQVSDEEDNV 1521


>tr|A9RVH0|A9RVH0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_120036 PE=4 SV=1
          Length = 1043

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = -3

Query: 334 AVTQYETELMRSADSKSELQKEVIELAEAAKVAREIAIKADEEVTRIMSLXXXXXXXXXX 155
           A+ + E EL +    K ELQKE +  +E ++VA + A+ ADE+V   M+           
Sbjct: 130 ALAECEAELAQIQTVKMELQKEALRRSELSQVAEDAAVLADEDVASAMTSAEEAVALEME 189

Query: 154 XXXXVCIAEIALQKAEKLASEELH-IDATEASTQDV 50
               V  AEI L+K E  A E    +  TEAS ++V
Sbjct: 190 ALKRVSDAEIVLRKVEAFAEEAARALTKTEASGEEV 225


>tr|A7PZ88|A7PZ88_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026787001
           PE=4 SV=1
          Length = 499

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 33/75 (44%), Positives = 39/75 (52%)
 Frame = -3

Query: 319 ETELMRSADSKSELQKEVIELAEAAKVAREIAIKADEEVTRIMSLXXXXXXXXXXXXXXV 140
           E EL R    K ELQKEV +L E A+  +  A+KA+EEV  IM L              V
Sbjct: 204 EAELKRLQCRKEELQKEVDKLNEKAEKTQMDALKAEEEVANIMLLAEQAVAFELEATQHV 263

Query: 139 CIAEIALQKAEKLAS 95
             AEIA+QK EK  S
Sbjct: 264 NDAEIAIQKVEKSLS 278


>tr|A9VKJ9|A9VKJ9_BACWK Cell divisionFtsK/SpoIIIE OS=Bacillus
           weihenstephanensis (strain KBAB4) GN=BcerKBAB4_4520 PE=4
           SV=1
          Length = 1393

 Score = 37.7 bits (86), Expect = 0.45
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 11/175 (6%)
 Frame = -3

Query: 523 ELENVVEGASAFV----SRDSSAELEALESIGAAGDVSGESENEASTLSXXXXXXXXXXX 356
           ELE   E A   V    S +++ E+  LE    A +   E E     +            
Sbjct: 392 ELEKSEEAAEEVVELEKSEEAAEEVVELEKPEEATEEVVELEETEEAIEEVAELEEAEEA 451

Query: 355 XXXAFRLAVTQYETELMRSADSKSELQKEVIELAEAAKVAREIA------IKADEEVTRI 194
                 L  T+  TE +   +   E+ +EV+EL E  +   E+A       +A EEV  +
Sbjct: 452 AEEVVELEETKEATEEVVELEKSEEVTEEVVELEETKEATEEVAELEEAEEEAAEEVVEL 511

Query: 193 MSLXXXXXXXXXXXXXXVCIAEIA-LQKAEKLASEELHIDATEASTQDVESVGNA 32
                                E+A L+K+E++  E + ++ T+ +T++V  +  A
Sbjct: 512 EKSEEATEEVVELEEAEEATEEVAELEKSEEVTEEVVELEETKEATEEVAELEEA 566


>tr|A5KAV6|A5KAV6_PLAVI Merozoite surface protein 3 (MSP3), putative
           OS=Plasmodium vivax GN=PVX_097700 PE=4 SV=1
          Length = 1140

 Score = 36.6 bits (83), Expect = 1.0
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 6/188 (3%)
 Frame = -3

Query: 574 KQAKEAGSSSLPDFAQAELENVVEGASAFVS------RDSSAELEALESIGAAGDVSGES 413
           K+AK+A +S+  +   AEL   V  A A  +      ++++   E  +++GAA  +  + 
Sbjct: 348 KKAKDAETSANYERIIAELAAEVAKAEAEKNEAEKELKEANKADEEAKAVGAA--IGADK 405

Query: 412 ENEASTLSXXXXXXXXXXXXXXAFRLAVTQYETELMRSADSKSELQKEVIELAEAAKVAR 233
             E + +               A  ++  +Y  E    +++K ++  E+ +   AAK A+
Sbjct: 406 AKEKAKIEAEKAKKQLDEAKKLAKEVSSAEYNVEEKSVSEAKEKVS-EIQKAVTAAKTAK 464

Query: 232 EIAIKADEEVTRIMSLXXXXXXXXXXXXXXVCIAEIALQKAEKLASEELHIDATEASTQD 53
           E+A+KA +  T I++                  A  A  +AEK AS+     A EA+T+ 
Sbjct: 465 ELAVKAAKVATHILNAEKAKTEAQQAKKD----ALKAKAEAEKYASDSKAEKAKEAATKA 520

Query: 52  VESVGNAT 29
             +   AT
Sbjct: 521 ATAADTAT 528


>tr|O65273|O65273_ARATH F6N23.14 protein (Putative uncharacterized
           protein AT4g00640) OS=Arabidopsis thaliana GN=AT4g00640
           PE=2 SV=1
          Length = 425

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = -3

Query: 289 KSELQKEVIELAEAAKVAREIAIKADEEVTRIMSL 185
           K ELQKEV  L EAA+ A+  A+KA+E+V  IM L
Sbjct: 244 KDELQKEVDRLNEAAERAQISALKAEEDVANIMVL 278