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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916822
Clone id YMU001_000092_B04
Library
Length 424
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACACAAAAGATGGGTGTGTTTTATGCTATGGCATTTCATAAGGTTGGATTGGATCCTCCA
TTTGAACATTTGAGTGCTCAAAAGATTGGAGAAGTAATGCAGCAAGATCTCTCAATAGAG
GTTATAGGTCACTACTTGCCATCTTCTAGTCGAGTGAGGCGTAATGGCAAGAGTGGAGGG
TGGCGAGGCACTCTAGAGAAGAGTACCTCTCATACGCTTTTGTTTATGGAGGCATTATGT
CCGAGAGGAGGTACTATTCTAGAGGTTGGTGGTGGTACAAGGCTTGCATACTGGTCGTGG
TTGCTTGGTTGTGGAGAGTGACCATGAGATATGCGAGAGGTATTTATCTCCCCTCATGCA
AGAGAACTATGTAATACCACATGTCTTTTGAGCTTGGAAACAATGATAGTAGCACTGATG
ATGA
■■Homology search results ■■ -
sp_hit_id P07061
Definition sp|P07061|NYLB_FLASK 6-aminohexanoate-dimer hydrolase OS=Flavobacterium sp. (strain K172)
Align length 55
Score (bit) 32.3
E-value 0.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916822|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_B04.
         (424 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07061|NYLB_FLASK 6-aminohexanoate-dimer hydrolase OS=Flavoba...    32   0.80 
sp|P07062|NYLC_FLASK 6-aminohexanoate-dimer hydrolase OS=Flavoba...    32   1.0  
sp|Q80T32|GP133_MOUSE Probable G-protein coupled receptor 133 OS...    30   3.0  
sp|P23090|GAG_MLVDU Gag polyprotein OS=Duplan murine leukemia vi...    30   3.9  
sp|P19477|FIBA_PARPA Fibrinogen-like protein A OS=Parastichopus ...    30   3.9  
sp|P57250|RIBF_BUCAI Riboflavin biosynthesis protein ribF OS=Buc...    30   4.0  
sp|Q8NDX1|PSD4_HUMAN PH and SEC7 domain-containing protein 4 OS=...    30   5.0  
sp|Q5VP70|PIN3A_ORYSJ Probable auxin efflux carrier component 3a...    30   5.0  
sp|P39284|YJEO_ECOLI Inner membrane protein yjeO OS=Escherichia ...    29   6.6  
sp|A1B487|NUOH_PARDP NADH-quinone oxidoreductase subunit H OS=Pa...    29   6.6  
sp|P29920|NQO8_PARDE NADH-quinone oxidoreductase subunit 8 OS=Pa...    29   6.6  
sp|Q8NI99|ANGL6_HUMAN Angiopoietin-related protein 6 OS=Homo sap...    29   6.6  
sp|Q9R045|ANGL2_MOUSE Angiopoietin-related protein 2 OS=Mus musc...    29   6.6  
sp|Q9UKU9|ANGL2_HUMAN Angiopoietin-related protein 2 OS=Homo sap...    29   6.6  
sp|Q8R0Z6|ANGL6_MOUSE Angiopoietin-related protein 6 OS=Mus musc...    29   8.6  
sp|Q1BAH2|PYRH_MYCSS Uridylate kinase OS=Mycobacterium sp. (stra...    29   8.8  
sp|A1UEJ0|PYRH_MYCSK Uridylate kinase OS=Mycobacterium sp. (stra...    29   8.8  
sp|A3PXZ4|PYRH_MYCSJ Uridylate kinase OS=Mycobacterium sp. (stra...    29   8.8  
sp|A6QLU6|GP133_BOVIN Probable G-protein coupled receptor 133 OS...    29   8.8  

>sp|P07061|NYLB_FLASK 6-aminohexanoate-dimer hydrolase
           OS=Flavobacterium sp. (strain K172) GN=nylB PE=1 SV=1
          Length = 392

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 91  EVMQQDLSIEVIGHYLPSSSRVRRNGKSGGWRGTLEKSTSHTLLFMEALCPRGGT 255
           +V+   +SI+    Y+  +S V+ + +S GWR   +   + T  F+  L   GGT
Sbjct: 156 QVLDMQISIDYNEDYVDPASEVQTHDRSAGWRTRRDGDPADTYEFLTTLRGDGGT 210


>sp|P07062|NYLC_FLASK 6-aminohexanoate-dimer hydrolase
           OS=Flavobacterium sp. (strain K172) GN=nylB' PE=1 SV=1
          Length = 392

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 91  EVMQQDLSIEVIGHYLPSSSRVRRNGKSGGWRGTLEKSTSHTLLFMEALCPRGGT 255
           +V+   +SI+    Y+  +S V+ +G+S GWR       + T  F+  L   G T
Sbjct: 156 QVLDMQISIDYNEDYVDPASEVQTHGRSAGWRTRATGDPADTYEFLTTLRGDGST 210


>sp|Q80T32|GP133_MOUSE Probable G-protein coupled receptor 133
           OS=Mus musculus GN=Gpr133 PE=2 SV=2
          Length = 903

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = -1

Query: 316 LHNQATTTSMQALYHHQPLE*YLLSDIMPP*TKAYERYSSLECLATLHSCHYASLD 149
           LH+QA TT +  LYH      Y L +I P  T+  E  +  +CL ++ S H  SL+
Sbjct: 444 LHSQAWTTIVGLLYHTMH---YYLKNIHPTSTEIPEAVNCRDCLLSVAS-HLISLE 495


>sp|P23090|GAG_MLVDU Gag polyprotein OS=Duplan murine leukemia virus
           GN=gag PE=3 SV=3
          Length = 529

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 308 PSNHDQYASLVP--PPTSRIVPPLG 240
           PS  D Y +L+P  PP SR++PP G
Sbjct: 123 PSRSDLYTALIPSKPPKSRVLPPNG 147


>sp|P19477|FIBA_PARPA Fibrinogen-like protein A OS=Parastichopus
           parvimensis PE=2 SV=1
          Length = 282

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 222 VYGGIMSERRYYSRGWWWYKACIL 293
           VY    +    Y RG WWYK+C+L
Sbjct: 219 VYSINCASHSSYGRGAWWYKSCLL 242


>sp|P57250|RIBF_BUCAI Riboflavin biosynthesis protein ribF
           OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
           GN=ribF PE=3 SV=1
          Length = 313

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 22  YAMAFHKVGLDPPFEHLSAQKIGEVMQQDLSIEVIGHYL 138
           YA+    +G+ P F +    K+ EV   D+ I++ G Y+
Sbjct: 235 YAIGISNIGIKPSFSNTQKNKLLEVYLFDIKIDLYGKYI 273


>sp|Q8NDX1|PSD4_HUMAN PH and SEC7 domain-containing protein 4
           OS=Homo sapiens GN=PSD4 PE=2 SV=2
          Length = 1056

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 353 GEINTSRISHGHSPQPSNHDQYASLVPPPTSRIVPPLGHNASI 225
           GE      SH   P+P     +A+  P PT + VPP G    +
Sbjct: 30  GECPRETCSHEDPPEPFEEQTWATDPPEPTRQNVPPWGSGVEL 72


>sp|Q5VP70|PIN3A_ORYSJ Probable auxin efflux carrier component 3a
           OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1
          Length = 618

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 368 SSLA*GEINTSRISHGHSPQPSNHDQYASLVPPPTSRIVPPLGHNA 231
           SS    E+ + + S G +P+ SN D++++  P P +     L H+A
Sbjct: 272 SSFGASELYSLQSSRGPTPRQSNFDEHSARPPKPPATTTGALNHDA 317


>sp|P39284|YJEO_ECOLI Inner membrane protein yjeO OS=Escherichia
           coli (strain K12) GN=yjeO PE=1 SV=1
          Length = 104

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 261 RGWWWYKACILVVVAWLWRVTMRY 332
           RGW+ Y   + +   WLW+  +RY
Sbjct: 77  RGWFMYATALAIFGYWLWQFFLRY 100


>sp|A1B487|NUOH_PARDP NADH-quinone oxidoreductase subunit H
           OS=Paracoccus denitrificans (strain Pd 1222) GN=nuoH
           PE=3 SV=1
          Length = 345

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 225 YGGIMSERRYYSRGWWWYKACILVVVAWLW 314
           +GG +S   + + GWWW     +V+  W W
Sbjct: 263 FGGWLSPVPFIADGWWW-----MVIKMWFW 287
tr_hit_id A9ML96
Definition tr|A9ML96|A9ML96_SALAR Putative uncharacterized protein OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Align length 21
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916822|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_B04.
         (424 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9ML96|A9ML96_SALAR Putative uncharacterized protein OS=Salmo...    34   4.1  
tr|A4REW3|A4REW3_MAGGR Putative uncharacterized protein OS=Magna...    34   4.1  
tr|Q2BR43|Q2BR43_9GAMM Penicillin-binding protein 2 OS=Neptuniib...    33   9.1  

>tr|A9ML96|A9ML96_SALAR Putative uncharacterized protein
           OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86
           / RSK2980) GN=SARI_02403 PE=4 SV=1
          Length = 133

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 267 WWWYKACILVVVAWLWRVTMR 329
           WWW   C LV+ +WLW    R
Sbjct: 16  WWWLTICALVIFSWLWSENTR 36


>tr|A4REW3|A4REW3_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_00544 PE=4 SV=1
          Length = 195

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 353 GEINTSRISHGHSPQPSNHDQYASLVPPPTSRIVPPLGHNASINKS 216
           G IN++  SH  +P  S+    AS  P PTS   P LG + S  K+
Sbjct: 115 GSINSNPASHAPTPSASSVKDMASNQPTPTSATAPKLGTSKSKKKT 160


>tr|Q2BR43|Q2BR43_9GAMM Penicillin-binding protein 2
           OS=Neptuniibacter caesariensis GN=MED92_07686 PE=4 SV=1
          Length = 634

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +1

Query: 4   QKMGVFYAMAFHKVGLDPPFEHLSAQKIGEVMQQDLSIEVIGHYLPSSSRVRRNGKSGGW 183
           Q   V++    HK+G+DP  ++L     G+V   DL  E +G  LPS    +R  K+  +
Sbjct: 382 QSCDVWFYDVSHKMGVDPMSDYLGKFGFGQVTSLDLP-EALGAILPSREWKKRARKTPWY 440

Query: 184 RG 189
            G
Sbjct: 441 TG 442