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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916825
Clone id YMU001_000092_B08
Library
Length 340
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACAATGGTGAACTCGAAACCTCAAAAACAGACATTGACCTTGTCAACATCTATAAAACC
ATAACGAGTGTCGAGCCCTCTAATCCTTAGCCGAAGCCGTGGAACTAGTTGCTTTCCAAA
TGGTATAGTTCTCGAGATCGGAGGGAAAGGTAGAAAGGGTAGGTATCTTGATTGGTTGTT
CACCTACGCTAGAGTAGAGTTGGACCAATCTCCCCGCTCCTCATGGATATGTACTCCATC
ATGAACCTCATCTCGTTGTACTTCTTCACCCTGGACCAAGCTAAAATCAGAATCATCAGA
GAACTTGGGCATGTGACGAGGCTAGGTCAGAACGGGTGAA
■■Homology search results ■■ -
sp_hit_id Q556R7
Definition sp|Q556R7|CF50_DICDI Counting factor 50 OS=Dictyostelium discoideum
Align length 37
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916825|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_B08.
         (340 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q556R7|CF50_DICDI Counting factor 50 OS=Dictyostelium discoid...    29   6.4  
sp|Q94B60|CLPP4_ARATH ATP-dependent Clp protease proteolytic sub...    29   8.3  

>sp|Q556R7|CF50_DICDI Counting factor 50 OS=Dictyostelium discoideum
           GN=cf50-1 PE=1 SV=1
          Length = 303

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 220 GAGRLVQLYSSVGEQPIKIPTLSTFPSDLENYTIWKA 110
           G G LV +YSS GE P  +  LST    L  Y +W A
Sbjct: 150 GLGVLVGVYSSEGEWPQTVGNLST----LSQYPLWYA 182


>sp|Q94B60|CLPP4_ARATH ATP-dependent Clp protease proteolytic
           subunit 4, chloroplastic OS=Arabidopsis thaliana
           GN=CLPP4 PE=1 SV=1
          Length = 292

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +2

Query: 32  TLTLSTSIKP*RVSSPLILSRSRGTSCFP 118
           TL+LS+S+KP  VSS L  S S  +S FP
Sbjct: 3   TLSLSSSLKPSLVSSRLNSSSSASSSSFP 31
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916825|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_B08.
         (340 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******