BP916827
Clone id YMU001_000092_B11
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GACCCTCTGCAAGAACTAGCTGAGCAGCCTTATAATGCTTAATAGCTTCTCCTGAAAGCC
CATTTTCTTCTGCCCACAGGGCTTTGTCAATTTCTGCTTTTGCCAGACTAAAATACCCTT
TAAGCTTCTGTTCTGCTCGTTGCTTCCCTGTATGATAAGGTACCAAGGAGTTTGTAGGGT
CCTGCCCTTCATTCATCCACGTTGCGTTCCTGTTAGTCTCCTCGGCAGAAGAAAAAACCA
AAGAAGAGAGCTTCTCAAGAGCCCACATCAAAAAGCTGAGAAAAGACACAGAGATATCTG
CACTGATGTCTTTCCAACTAGCCAGCATACTCTTCTTGAAGTCTGCTCAGATCCTATGCT
CTACTCCATCGCAACGTCGAGAGGATGCAGAAGACAATCTTTTATCTCTCCGTGCTGCTT
CAGACGCGCTGCATCCTATGATCTCTCCTGAGTTGACCTGATGCG
■■Homology search results ■■ -
sp_hit_id Q9C6H4
Definition sp|Q9C6H4|SINL1_ARATH E3 ubiquitin-protein ligase SINA-like 1 OS=Arabidopsis thaliana
Align length 109
Score (bit) 37.4
E-value 0.032
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916827|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_B11.
(465 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9C6H4|SINL1_ARATH E3 ubiquitin-protein ligase SINA-like 1 OS... 37 0.032
sp|Q9I8D8|CD40L_CHICK CD40 ligand OS=Gallus gallus GN=CD40LG PE=... 31 3.0
sp|Q9GLP1|FA5_PIG Coagulation factor V OS=Sus scrofa GN=F5 PE=2 ... 30 6.7
sp|Q8WXH0|SYNE2_HUMAN Nesprin-2 OS=Homo sapiens GN=SYNE2 PE=1 SV=3 29 8.7
sp|Q7Z6J9|SEN54_HUMAN tRNA-splicing endonuclease subunit Sen54 O... 29 8.7
sp|Q9XQV3|PSAA_HETTR Photosystem I P700 chlorophyll a apoprotein... 29 8.7
sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS... 29 8.7
sp|Q52664|BZTB_RHOCA Glutamate/glutamine/aspartate/asparagine tr... 29 8.7
sp|Q924Z6|XPO6_MOUSE Exportin-6 OS=Mus musculus GN=Xpo6 PE=2 SV=2 29 8.9
sp|Q96QU8|XPO6_HUMAN Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1 29 8.9

>sp|Q9C6H4|SINL1_ARATH E3 ubiquitin-protein ligase SINA-like 1
OS=Arabidopsis thaliana GN=At1g66610 PE=2 SV=1
Length = 366

Score = 37.4 bits (85), Expect = 0.032
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Frame = +2

Query: 59 PIFFCPQGFVNFCFCQTKIPFKLLFCSLLPCMIRYQGVCRVLPFIHPRCVPVSLLGRRKN 238
PIF C +G + C T + K +CSL R + + RV+ RC V+ G +
Sbjct: 66 PIFQCDKGHIACSSCCTNVSNKCPYCSLAIGNYRSRIMERVVEAFIVRCPIVA--GEASS 123

Query: 239 QRRELLKSP---HQKAEKRHRDICTDVFPTSQHTLLE--VCSDPMLYSI 370
R++ L+ P + E RD+ SQ LL+ VCS + SI
Sbjct: 124 SRQKRLRVPSIDEENGENGGRDVVVPSGTLSQLDLLDCPVCSKALKISI 172


>sp|Q9I8D8|CD40L_CHICK CD40 ligand OS=Gallus gallus GN=CD40LG PE=2
SV=2
Length = 272

Score = 30.8 bits (68), Expect = 3.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3

Query: 217 TNRNATWMNEGQDPTNSLVPYHTGKQRAEQ 128
T R WM PT+SL+ YH GK + E+
Sbjct: 148 TVRVLKWMTTSYAPTSSLISYHEGKLKVEK 177


>sp|Q9GLP1|FA5_PIG Coagulation factor V OS=Sus scrofa GN=F5 PE=2
SV=1
Length = 2258

Score = 29.6 bits (65), Expect = 6.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3

Query: 253 KLSSLVFSSAEETNRNATWMNEGQDPTNSLVPYH 152
K+S++ SA T N T EG+ P +SL+P H
Sbjct: 282 KVSAITLVSATSTTANMTVSPEGKWPISSLIPKH 315


>sp|Q8WXH0|SYNE2_HUMAN Nesprin-2 OS=Homo sapiens GN=SYNE2 PE=1 SV=3
Length = 6885

Score = 29.3 bits (64), Expect = 8.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +3

Query: 207 FLLVSSAEEKTKEESFSRAHIKKLRKDTEISALMSFQLASILFLKSAQILCSTPSQRRED 386
FL + K K+ H+KK + L+S+ + L+ + +C ++ ED
Sbjct: 1881 FLTLEGRNSKIKQVDSVLKHVKKHLPKAHVKELISWLVGQEFELEKMESICQARAKELED 1940

Query: 387 AEDNLLSLR 413
+ LL L+
Sbjct: 1941 SLQQLLRLQ 1949


>sp|Q7Z6J9|SEN54_HUMAN tRNA-splicing endonuclease subunit Sen54
OS=Homo sapiens GN=TSEN54 PE=1 SV=2
Length = 526

Score = 29.3 bits (64), Expect = 8.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -2

Query: 182 GPYKLLGTLSYREATSRTEA*RVF*SGKSRN*QSPVGRRKWAFRR 48
GP++LLG+L +R + SG++ N + G+R+W F +
Sbjct: 256 GPFQLLGSLGPSPGPAREGVGCSWESGRAENGVTGAGKRRWNFEQ 300


>sp|Q9XQV3|PSAA_HETTR Photosystem I P700 chlorophyll a apoprotein A1
OS=Heterocapsa triquetra GN=psaA PE=3 SV=1
Length = 732

Score = 29.3 bits (64), Expect = 8.7
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Frame = -3

Query: 343 DFKKSMLASWK-DISADISVSFLSFLMWALEKLSSLVFSSAEETNRNATWMNEGQDPTNS 167
DF++S S + A + S L+ L + F A +N +A W+ + + P +
Sbjct: 44 DFQQSSSESTAASVGAKVFSSGLAHFSIVFFWLGGMHFHGAYFSNYSA-WLKDPKTPGSQ 102

Query: 166 LVPYHTGKQRAEQKLKGYF-SLAKAEIDKALWAEENGLSGEAIKHYKAAQLV 14
LV G+ Q L GYF S+ LW E ++ +K+ AA L+
Sbjct: 103 LVWSLVGQDILNQDLGGYFQSIRVTSGFFQLWRAEGIVTQVHLKYAAAAALI 154


>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial
OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1
Length = 358

Score = 29.3 bits (64), Expect = 8.7
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3

Query: 148 GKQRAEQKLKGYFSLAKAEIDKALWAEENG-LSGEAIKHYKAAQLV 14
G R ++K G +LA EID++ W EE + GE + + +L+
Sbjct: 107 GPGRLDRKWTGTTALASPEIDQSQWVEERARVLGETLTEDEVTELI 152


>sp|Q52664|BZTB_RHOCA Glutamate/glutamine/aspartate/asparagine
transport system permease protein bztB OS=Rhodobacter
capsulatus GN=bztB PE=3 SV=1
Length = 426

Score = 29.3 bits (64), Expect = 8.7
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = -3

Query: 346 ADFKKSML---ASWKDISADISVS--FLSFLMWALEKLSSLVFSSAEETNRNATWMNEGQ 182
A F+ SML ++ I+ I V FL+ L+W L + + ++ N + W G
Sbjct: 10 AGFRLSMLIYDTRFRSITIQIVVLLLFLAGLVWLLNNAYVNLEAKGKDFNFSFLWTRAGY 69

Query: 181 DPTNSLVPY 155
D +L+PY
Sbjct: 70 DLAQTLIPY 78


>sp|Q924Z6|XPO6_MOUSE Exportin-6 OS=Mus musculus GN=Xpo6 PE=2 SV=2
Length = 1125

Score = 29.3 bits (64), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1

Query: 390 LHPLDVAME*SIGSEQTSRRVCWLVGKTSVQISLCLFSAF 271
L L+ +E G SR++C+ + SVQ+SL LF AF
Sbjct: 789 LSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAF 828


>sp|Q96QU8|XPO6_HUMAN Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1
Length = 1125

Score = 29.3 bits (64), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1

Query: 390 LHPLDVAME*SIGSEQTSRRVCWLVGKTSVQISLCLFSAF 271
L L+ +E G SR++C+ + SVQ+SL LF AF
Sbjct: 789 LSVLEDIVENISGESTKSRQICYQSLQESVQVSLALFPAF 828


tr_hit_id Q944N4
Definition tr|Q944N4|Q944N4_TOBAC Tobacco mosaic virus helicase domain-binding protein (Fragment) OS=Nicotiana tabacum
Align length 97
Score (bit) 70.1
E-value 5.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916827|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_B11.
(465 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q944N4|Q944N4_TOBAC Tobacco mosaic virus helicase domain-bind... 70 5e-11
tr|A5BIC4|A5BIC4_VITVI Putative uncharacterized protein OS=Vitis... 57 3e-07
tr|A9RII8|A9RII8_PHYPA Predicted protein OS=Physcomitrella paten... 56 1e-06
tr|A7PY13|A7PY13_VITVI Chromosome chr15 scaffold_37, whole genom... 55 2e-06
tr|A5BB69|A5BB69_VITVI Putative uncharacterized protein OS=Vitis... 55 2e-06
tr|B4FVB5|B4FVB5_MAIZE Putative uncharacterized protein OS=Zea m... 55 2e-06
tr|Q658G8|Q658G8_ORYSJ Os06g0130000 protein OS=Oryza sativa subs... 53 7e-06
tr|B8B1Z6|B8B1Z6_ORYSI Putative uncharacterized protein OS=Oryza... 53 7e-06
tr|Q0WMJ4|Q0WMJ4_ARATH Putative uncharacterized protein At2g4550... 52 1e-05
tr|O64630|O64630_ARATH Putative uncharacterized protein At2g4550... 52 1e-05
tr|A8MRR2|A8MRR2_ARATH Uncharacterized protein At2g45500.1 OS=Ar... 52 1e-05
tr|A9NL44|A9NL44_PICSI Putative uncharacterized protein OS=Picea... 35 1.4
tr|A4ARD6|A4ARD6_9FLAO Cystathionine beta-lyase OS=Flavobacteria... 34 4.1
tr|Q9V1C8|Q9V1C8_PYRAB GTP-binding protein OS=Pyrococcus abyssi ... 34 4.1
tr|Q8U054|Q8U054_PYRFU GTP-binding protein, gtp1/obg family OS=P... 34 4.1
tr|O59329|O59329_PYRHO 387aa long hypothetical developmentally r... 34 4.1
tr|B3ERR1|B3ERR1_AMOA5 Putative uncharacterized protein OS=Amoeb... 33 5.4
tr|Q55D86|Q55D86_DICDI Putative uncharacterized protein OS=Dicty... 33 5.4
tr|Q5M3E0|Q5M3E0_STRT2 Polar amino acid ABC uptake transporter s... 33 7.0
tr|A0N0T5|A0N0T5_9RHOO Transposase (Fragment) OS=Azoarcus anaero... 33 7.0
tr|Q6CRY5|Q6CRY5_KLULA KLLA0D05467p OS=Kluyveromyces lactis GN=K... 33 7.0
tr|Q5CW69|Q5CW69_CRYPV PP2C like protein phosphatase OS=Cryptosp... 33 9.1

>tr|Q944N4|Q944N4_TOBAC Tobacco mosaic virus helicase domain-binding
protein (Fragment) OS=Nicotiana tabacum PE=2 SV=1
Length = 537

Score = 70.1 bits (170), Expect = 5e-11
Identities = 45/97 (46%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Frame = -3

Query: 280 LSFLMWALEKLSSLVF----SSAEETNRNATWMNEGQDPTNSLVPYHTGKQRAEQKLKGY 113
+SFL E LSS+ SS+ + +RN + D TG +RA KLKGY
Sbjct: 37 MSFLKDLAETLSSIFSDTPSSSSPQNDRNLNSADRTMDGVA------TGNERAAYKLKGY 90

Query: 112 FSLAKAEIDKALWAEENGLSGEAIKHYKAAQLVLAEG 2
F LAK EIDKA+ AEE GL+ +AI HY+ AQ +LAEG
Sbjct: 91 FDLAKEEIDKAVRAEEWGLADDAISHYQNAQKILAEG 127


>tr|A5BIC4|A5BIC4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_024819 PE=4 SV=1
Length = 125

Score = 57.4 bits (137), Expect = 3e-07
Identities = 36/95 (37%), Positives = 48/95 (50%)
Frame = -3

Query: 289 VSFLSFLMWALEKLSSLVFSSAEETNRNATWMNEGQDPTNSLVPYHTGKQRAEQKLKGYF 110
VS +SFL ++ L S+ S ++ + +V QR KLKGY+
Sbjct: 18 VSVMSFLKGIIDSLGSIFSDSTSPDEAQSSPNFSDNRAMDGVVGTGVSNQRIAYKLKGYY 77

Query: 109 SLAKAEIDKALWAEENGLSGEAIKHYKAAQLVLAE 5
LA EI KA+ AEE GL +AI HYK AQ +L E
Sbjct: 78 DLATEEIAKAVRAEEWGLVDDAIVHYKNAQRILIE 112


>tr|A9RII8|A9RII8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_114828 PE=4 SV=1
Length = 465

Score = 55.8 bits (133), Expect = 1e-06
Identities = 30/64 (46%), Positives = 39/64 (60%)
Frame = -3

Query: 193 NEGQDPTNSLVPYHTGKQRAEQKLKGYFSLAKAEIDKALWAEENGLSGEAIKHYKAAQLV 14
N +SLV + +R +KLKGYFSL K EIDKA+ A+E GL +A+ HY A +
Sbjct: 3 NRPSSTPSSLVLGNVDGERVVEKLKGYFSLGKGEIDKAVRADEWGLLEDALLHYSNANRI 62

Query: 13 LAEG 2
L EG
Sbjct: 63 LLEG 66


>tr|A7PY13|A7PY13_VITVI Chromosome chr15 scaffold_37, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00026260001
PE=3 SV=1
Length = 459

Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/92 (36%), Positives = 46/92 (50%)
Frame = -3

Query: 280 LSFLMWALEKLSSLVFSSAEETNRNATWMNEGQDPTNSLVPYHTGKQRAEQKLKGYFSLA 101
+SFL ++ L S+ S ++ + +V QR KLKGY+ LA
Sbjct: 1 MSFLKGIIDSLGSIFSDSTSPDEAQSSPNFSDNGAMDGVVGTGVSNQRIAYKLKGYYDLA 60

Query: 100 KAEIDKALWAEENGLSGEAIKHYKAAQLVLAE 5
EI KA+ AEE GL +AI HYK AQ +L E
Sbjct: 61 TEEIAKAVRAEEWGLVDDAIVHYKNAQRILIE 92


>tr|A5BB69|A5BB69_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_011429 PE=3 SV=1
Length = 470

Score = 55.1 bits (131), Expect = 2e-06
Identities = 34/92 (36%), Positives = 46/92 (50%)
Frame = -3

Query: 280 LSFLMWALEKLSSLVFSSAEETNRNATWMNEGQDPTNSLVPYHTGKQRAEQKLKGYFSLA 101
+SFL ++ L S+ S ++ + +V QR KLKGY+ LA
Sbjct: 1 MSFLKGIIDSLGSIFSDSTSPDEAQSSPNFSDNGAMDGVVGTGVSNQRIAYKLKGYYDLA 60

Query: 100 KAEIDKALWAEENGLSGEAIKHYKAAQLVLAE 5
EI KA+ AEE GL +AI HYK AQ +L E
Sbjct: 61 TEEIAKAVRAEEWGLVDDAIVHYKNAQRILIE 92


>tr|B4FVB5|B4FVB5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 490

Score = 54.7 bits (130), Expect = 2e-06
Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = -3

Query: 280 LSFLMWALEKLSSLVFSSAEETNRNATWMNE-GQDPTNSLVPYHTGKQRAEQKLKGYFSL 104
+SFL + SSL+FSS A M+ G P+ + V +R KL+GYF L
Sbjct: 1 MSFLRSLADSFSSLLFSSGG----GAVSMDAAGAAPSPAAVV----GERVAVKLRGYFDL 52

Query: 103 AKAEIDKALWAEENGLSGEAIKHYKAAQLVLAE 5
AK EIDKA+ AEE GL EA HY+ A V+ E
Sbjct: 53 AKEEIDKAVRAEEWGLPDEATAHYRNAMRVMLE 85


>tr|Q658G8|Q658G8_ORYSJ Os06g0130000 protein OS=Oryza sativa subsp.
japonica GN=P0538C01.26-1 PE=2 SV=1
Length = 487

Score = 53.1 bits (126), Expect = 7e-06
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Frame = -3

Query: 280 LSFLMWALEKLSSLVFSSAEETNRNATWMNEGQDPTNSLV---PYHTGKQRAEQKLKGYF 110
+SFL + LSSL++S+A + G D + P +R KL+GYF
Sbjct: 1 MSFLRALADSLSSLLYSAAAK----------GGDMDGAAAAPSPAAVVGERVAVKLRGYF 50

Query: 109 SLAKAEIDKALWAEENGLSGEAIKHYKAAQLVLAE 5
LAK EIDKA+ AEE GL +A HY+ A V+ E
Sbjct: 51 ELAKEEIDKAVRAEEWGLPDDAAAHYRNALRVMLE 85


>tr|B8B1Z6|B8B1Z6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_21482 PE=4 SV=1
Length = 487

Score = 53.1 bits (126), Expect = 7e-06
Identities = 37/95 (38%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Frame = -3

Query: 280 LSFLMWALEKLSSLVFSSAEETNRNATWMNEGQDPTNSLV---PYHTGKQRAEQKLKGYF 110
+SFL + LSSL++S+A + G D + P +R KL+GYF
Sbjct: 1 MSFLRALADSLSSLLYSAAAK----------GGDMDGAAAAPSPAAVVGERVAVKLRGYF 50

Query: 109 SLAKAEIDKALWAEENGLSGEAIKHYKAAQLVLAE 5
LAK EIDKA+ AEE GL +A HY+ A V+ E
Sbjct: 51 ELAKEEIDKAVRAEEWGLPDDAAAHYRNALRVMLE 85


>tr|Q0WMJ4|Q0WMJ4_ARATH Putative uncharacterized protein At2g45500
OS=Arabidopsis thaliana GN=At2g45500 PE=2 SV=1
Length = 487

Score = 52.0 bits (123), Expect = 1e-05
Identities = 30/92 (32%), Positives = 51/92 (55%)
Frame = -3

Query: 280 LSFLMWALEKLSSLVFSSAEETNRNATWMNEGQDPTNSLVPYHTGKQRAEQKLKGYFSLA 101
+SFL ++ SS++ +++ + + + + + N + +R KLKGYF LA
Sbjct: 1 MSFLRGIIDSFSSILNEESKK-DPSVSSSSTSSESMNGIDGVPVTNERIAYKLKGYFDLA 59

Query: 100 KAEIDKALWAEENGLSGEAIKHYKAAQLVLAE 5
K EI K + AEE GL +A+ HY+ AQ ++ E
Sbjct: 60 KEEIAKGVRAEEWGLHDDALLHYRNAQRIMNE 91


>tr|O64630|O64630_ARATH Putative uncharacterized protein At2g45500
OS=Arabidopsis thaliana GN=At2g45500 PE=2 SV=1
Length = 481

Score = 52.0 bits (123), Expect = 1e-05
Identities = 30/92 (32%), Positives = 51/92 (55%)
Frame = -3

Query: 280 LSFLMWALEKLSSLVFSSAEETNRNATWMNEGQDPTNSLVPYHTGKQRAEQKLKGYFSLA 101
+SFL ++ SS++ +++ + + + + + N + +R KLKGYF LA
Sbjct: 1 MSFLRGIIDSFSSILNEESKK-DPSVSSSSTSSESMNGIDGVPVTNERIAYKLKGYFDLA 59

Query: 100 KAEIDKALWAEENGLSGEAIKHYKAAQLVLAE 5
K EI K + AEE GL +A+ HY+ AQ ++ E
Sbjct: 60 KEEIAKGVRAEEWGLHDDALLHYRNAQRIMNE 91