BP916830
Clone id YMU001_000092_C02
Library
Length 385
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACTTCCTTGGGCACTATATGCACAAGGGTACGACATGACATACCGACATACCCATAGAAA
GAATGTCTCTGTACAAGGACTTTTGCCCTAATCCCATGTGCTGATTCATCACCAGAAGCA
CATGTCTAAAACAAAATATAAATGTACATCATGTACAACAATGTGAATCAGAGAATACTC
GTACCCATCACATGCTAAAACAGGTAAATTTCTCCATGCCCAGCAATTTCAGTAAAGAAA
GCTTGCCTTCCATGTCTTGCTTGTCAAGCTTTGTTTCTGCCACAGGGGATGTCTTTGCGT
AAACCCCACCATCATTTTCGACATCCTCTCTTAAATCTGCAAGCTTCAAATATGCTTCAT
TGTGCTTGCCACTTACCACAAAGGA
■■Homology search results ■■ -
sp_hit_id Q00GL7
Definition sp|Q00GL7|PSBU_KARBR Photosystem II 12 kDa extrinsic protein, chloroplastic OS=Karenia brevis
Align length 39
Score (bit) 30.0
E-value 3.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916830|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_C02.
(385 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q00GL7|PSBU_KARBR Photosystem II 12 kDa extrinsic protein, ch... 30 3.8
sp|P33246|VP40_NPVBM Structural glycoprotein p40 OS=Bombyx mori ... 29 8.2
sp|O27545|SEPS_METTH O-phosphoseryl-tRNA(Cys) synthetase OS=Meth... 29 8.4

>sp|Q00GL7|PSBU_KARBR Photosystem II 12 kDa extrinsic protein,
chloroplastic OS=Karenia brevis GN=psbU PE=2 SV=1
Length = 159

Score = 30.0 bits (66), Expect = 3.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1

Query: 241 ACLPCLACQALFLPQGMSLRKPHHHFRHPLLNLQASNML 357
ACL C+ A F P + + KP H + P+++ A L
Sbjct: 9 ACLACMGLAAAFSPATLGVNKPSHRQQAPVMSQVARREL 47


>sp|P33246|VP40_NPVBM Structural glycoprotein p40 OS=Bombyx mori
nuclear polyhedrosis virus GN=P40 PE=2 SV=1
Length = 348

Score = 28.9 bits (63), Expect = 8.2
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +3

Query: 114 RSTCLKQN-INVHHVQQCESENTRTHHMLKQVNFSMPSNFSKESLPSMSCL--SSFV 275
R C+ N INV+ V++ ESE T H+++ + + + ESLPS S + +SFV
Sbjct: 116 RDMCIDTNPINVNVVKRFESEETMIRHLIR-LQKELGQGNAAESLPSDSNIFQASFV 171


>sp|O27545|SEPS_METTH O-phosphoseryl-tRNA(Cys) synthetase
OS=Methanobacterium thermoautotrophicum GN=sepS PE=3
SV=1
Length = 532

Score = 28.9 bits (63), Expect = 8.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1

Query: 274 FLPQGMSLRKPHHHFRHPLLNLQ 342
+L G SLRKPHH ++P L +
Sbjct: 18 WLESGKSLRKPHHDMQYPRLRFE 40


tr_hit_id Q2BIH5
Definition tr|Q2BIH5|Q2BIH5_9GAMM Putative uncharacterized protein OS=Neptuniibacter caesariensis
Align length 53
Score (bit) 33.1
E-value 7.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916830|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_C02.
(385 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2BIH5|Q2BIH5_9GAMM Putative uncharacterized protein OS=Neptu... 33 7.2

>tr|Q2BIH5|Q2BIH5_9GAMM Putative uncharacterized protein
OS=Neptuniibacter caesariensis GN=MED92_02504 PE=4 SV=1
Length = 313

Score = 33.1 bits (74), Expect = 7.2
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = -1

Query: 382 FVVSGKHN-EAYLKLADLREDVENDGG-VYAKTSPVAETKLDKQDMEGKLSLL 230
F V + N ++YL+ A R ++ NDG V +T V K+D+Q+MEG SLL
Sbjct: 133 FTVKNEDNSDSYLRQAHRRMELHNDGTYVDERTDFVLMMKMDEQNMEGGDSLL 185