BP916831
Clone id YMU001_000092_C03
Library
Length 331
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGCAACACCTGCATCTGTGTGGCCACTCAATGCATCTTGTAAGGTTGGTTGATAATACAT
CAGATCGAAGGGGAAATAAGGTATTCCAGCAACTCACTAATATCCTCTGATAACTAAGCG
AATTTGAATGATTCAACCACCTTATCTAACAAGGGACCATACTTGGCCTTATCATCTTCC
CAGAACTGTCCTGTTACCGTATACAAGCGATTGTACCATCCATTGAAACGCATTCCGACA
ACAGAAAGCAAATGTCTTTTCTTTTCACCAGGCTTCTGAACTGTGTATTCTATATAGTAT
AACCCCTTGTTTGATTTAGAGTCCACAAGCT
■■Homology search results ■■ -
sp_hit_id Q9S720
Definition sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana
Align length 70
Score (bit) 96.3
E-value 4.0e-20
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916831|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_C03.
(331 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloropla... 96 4e-20
sp|Q6XQI9|L_ALLVP RNA-directed RNA polymerase OS=Allpahuayo viru... 29 8.4
sp|Q6K8S3|CCF14_ORYSJ Putative cyclin-F1-4 OS=Oryza sativa subsp... 29 8.4

>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3,
chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2
Length = 247

Score = 96.3 bits (238), Expect = 4e-20
Identities = 40/70 (57%), Positives = 55/70 (78%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWEDDKAKYGPL 150
L+DS+++KG YYIEYT+Q PGE ++HL S +GM NGWYNRLYTVTGQF +++ A+
Sbjct: 177 LIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSK 236

Query: 149 LDKVVESFKF 120
+ K V+SF+F
Sbjct: 237 IQKTVKSFRF 246


>sp|Q6XQI9|L_ALLVP RNA-directed RNA polymerase OS=Allpahuayo virus
(isolate Rat/Peru/CLHP-2472/1997) GN=L PE=3 SV=2
Length = 2201

Score = 28.9 bits (63), Expect = 8.4
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3

Query: 278 QKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWEDDKAKYGPLLDKVV 135
QK GEK R G+ FN YT F+ D K + P++ VV
Sbjct: 536 QKTGEKSR----AYGLAFNNVVTGQYTTEASFYCDPKRFFLPIMSDVV 579


>sp|Q6K8S3|CCF14_ORYSJ Putative cyclin-F1-4 OS=Oryza sativa subsp.
japonica GN=CycF1-4 PE=3 SV=1
Length = 432

Score = 28.9 bits (63), Expect = 8.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3

Query: 218 WYNRLYTVTGQFWEDDKAKYGPLLDKVVESF 126
W L +TG FW D + YGP D VE F
Sbjct: 313 WRKDLAELTG-FWYSDVSTYGPTADTFVEHF 342


tr_hit_id A9NRU1
Definition tr|A9NRU1|A9NRU1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 69
Score (bit) 101.0
E-value 2.0e-20
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916831|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_C03.
(331 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NRU1|A9NRU1_PICSI Putative uncharacterized protein OS=Picea... 101 2e-20
tr|B6SUH9|B6SUH9_MAIZE Thylakoid lumen protein OS=Zea mays PE=2 ... 99 1e-19
tr|A7QPG7|A7QPG7_VITVI Chromosome chr18 scaffold_137, whole geno... 93 6e-18
tr|Q6Z8N7|Q6Z8N7_ORYSJ Os08g0512500 protein OS=Oryza sativa subs... 93 7e-18
tr|B8BCC6|B8BCC6_ORYSI Putative uncharacterized protein OS=Oryza... 93 7e-18
tr|A9RK31|A9RK31_PHYPA Predicted protein OS=Physcomitrella paten... 92 1e-17
tr|B2ZAQ2|B2ZAQ2_9ROSI Putative uncharacterized protein OS=Gossy... 92 2e-17
tr|A5AT54|A5AT54_VITVI Putative uncharacterized protein OS=Vitis... 85 2e-15
tr|A3BUS5|A3BUS5_ORYSJ Putative uncharacterized protein OS=Oryza... 84 3e-15
tr|A8HZ72|A8HZ72_CHLRE Predicted protein OS=Chlamydomonas reinha... 60 5e-08
tr|Q01FJ5|Q01FJ5_OSTTA Thylakoid lumen protein, chloroplast prec... 42 0.020
tr|B1WBB3|B1WBB3_XENLA LOC100158416 protein OS=Xenopus laevis GN... 36 1.1
tr|B3GW15|B3GW15_9VIRU Putative uncharacterized protein OS=Strep... 35 2.4
tr|Q2RWM0|Q2RWM0_RHORT Cobalamin synthesis CobW protein OS=Rhodo... 33 5.4
tr|B5W0F2|B5W0F2_SPIMA Photosystem II oxygen evolving complex pr... 33 7.0
tr|Q9R220|Q9R220_CRIGR Alpha (1,3) fucosyltransferase 6A OS=Cric... 33 9.4
tr|Q9R219|Q9R219_CRIGR Alpha (1,3) fucosyltransferase 6B OS=Cric... 33 9.4

>tr|A9NRU1|A9NRU1_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 256

Score = 101 bits (252), Expect = 2e-20
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWEDDKAKYGPL 150
L+++KS GLYYIEY++QKPGE K HLLS +GM NGWYNRLYTVTGQ+ EDD KYG
Sbjct: 186 LLNAKSKNGLYYIEYSLQKPGESKIHLLSAIGMAMNGWYNRLYTVTGQYLEDDAGKYGSK 245

Query: 149 LDKVVESFK 123
++K + SF+
Sbjct: 246 IEKSISSFR 254


>tr|B6SUH9|B6SUH9_MAIZE Thylakoid lumen protein OS=Zea mays PE=2
SV=1
Length = 256

Score = 99.0 bits (245), Expect = 1e-19
Identities = 42/70 (60%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWEDDKA-KYGP 153
L+DS++ GLYY+EYT+Q PGE++RH++S +GM FNGWYNRLYTVTGQ+ +DD + KY P
Sbjct: 185 LIDSRAANGLYYLEYTLQNPGERRRHIVSAIGMAFNGWYNRLYTVTGQYIDDDDSEKYRP 244

Query: 152 LLDKVVESFK 123
++K V SF+
Sbjct: 245 QIEKAVGSFR 254


>tr|A7QPG7|A7QPG7_VITVI Chromosome chr18 scaffold_137, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00002933001
PE=4 SV=1
Length = 184

Score = 93.2 bits (230), Expect = 6e-18
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWEDDKAKYGPL 150
L+D ++ G YYIEY +Q PGE +RHL S VGM NGWYNRLYTVTGQ+ E++ K+
Sbjct: 114 LIDCRAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQYLEEESEKFSSK 173

Query: 149 LDKVVESFKF 120
++KVV SF+F
Sbjct: 174 IEKVVASFRF 183


>tr|Q6Z8N7|Q6Z8N7_ORYSJ Os08g0512500 protein OS=Oryza sativa subsp.
japonica GN=P0711H09.12 PE=2 SV=1
Length = 242

Score = 92.8 bits (229), Expect = 7e-18
Identities = 40/72 (55%), Positives = 57/72 (79%), Gaps = 2/72 (2%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWED--DKAKYG 156
L++S++ G YYIEYT+Q PGE++RH++S +GM FNGWYNRLYTVTGQ+ ++ D KY
Sbjct: 170 LINSRAANGFYYIEYTLQNPGEQRRHIVSAIGMAFNGWYNRLYTVTGQYIDEDGDVDKYR 229

Query: 155 PLLDKVVESFKF 120
++K V+SF+F
Sbjct: 230 AQIEKCVQSFRF 241


>tr|B8BCC6|B8BCC6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_29855 PE=4 SV=1
Length = 242

Score = 92.8 bits (229), Expect = 7e-18
Identities = 40/72 (55%), Positives = 57/72 (79%), Gaps = 2/72 (2%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWED--DKAKYG 156
L++S++ G YYIEYT+Q PGE++RH++S +GM FNGWYNRLYTVTGQ+ ++ D KY
Sbjct: 170 LINSRAANGFYYIEYTLQNPGEQRRHIVSAIGMAFNGWYNRLYTVTGQYIDEDGDVDKYR 229

Query: 155 PLLDKVVESFKF 120
++K V+SF+F
Sbjct: 230 AQIEKCVQSFRF 241


>tr|A9RK31|A9RK31_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_175716 PE=4 SV=1
Length = 255

Score = 92.4 bits (228), Expect = 1e-17
Identities = 41/69 (59%), Positives = 55/69 (79%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWEDDKAKYGPL 150
LVD KS YY+EYT+Q+ GE++RHL+SVVG+ NGW NRLYTVTGQ++E+D AKY
Sbjct: 185 LVDCKSRADKYYVEYTIQRLGEQQRHLVSVVGIGNNGWVNRLYTVTGQYFEEDSAKYKQD 244

Query: 149 LDKVVESFK 123
++K++ SFK
Sbjct: 245 INKIISSFK 253


>tr|B2ZAQ2|B2ZAQ2_9ROSI Putative uncharacterized protein
OS=Gossypioides kirkii PE=4 SV=1
Length = 274

Score = 91.7 bits (226), Expect = 2e-17
Identities = 39/63 (61%), Positives = 48/63 (76%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWEDDKAKYGPL 150
L+D K+ G YYIEYT+Q PGE +RHL S +GM NGWYNRLYTVTGQF E++ KYG
Sbjct: 182 LIDCKAANGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYTVTGQFVEEEAEKYGSR 241

Query: 149 LDK 141
++K
Sbjct: 242 IEK 244


>tr|A5AT54|A5AT54_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_030793 PE=4 SV=1
Length = 247

Score = 85.1 bits (209), Expect = 2e-15
Identities = 36/64 (56%), Positives = 47/64 (73%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWEDDKAKYGPL 150
L+D ++ G YYIEY +Q PGE +RHL S VGM NGWYNRLYTVTGQ+ E++ K+
Sbjct: 183 LIDCRAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQYLEEESEKFSSK 242

Query: 149 LDKV 138
++KV
Sbjct: 243 IEKV 246


>tr|A3BUS5|A3BUS5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_026797 PE=4 SV=1
Length = 256

Score = 84.3 bits (207), Expect = 3e-15
Identities = 33/53 (62%), Positives = 46/53 (86%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQKPGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWEDD 171
L++S++ G YYIEYT+Q PGE++RH++S +GM FNGWYNRLYTVTGQ+ ++D
Sbjct: 170 LINSRAANGFYYIEYTLQNPGEQRRHIVSAIGMAFNGWYNRLYTVTGQYIDED 222


>tr|A8HZ72|A8HZ72_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CGLD14 PE=4 SV=1
Length = 258

Score = 60.1 bits (144), Expect = 5e-08
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = -3

Query: 329 LVDSKSNKGLYYIEYTVQK-PGEKKRHLLSVVGMRFNGWYNRLYTVTGQFWEDDKAKYGP 153
L+D+ Y++EYT+QK P E KRHL + V + +NG YNRLY+VT Q E+ K +Y
Sbjct: 183 LIDAGEISNKYFLEYTLQKVPDEPKRHLYTAVALGYNGTYNRLYSVTAQSLEELKPQYEA 242

Query: 152 LLDKVVES 129
L +V+S
Sbjct: 243 TLLAMVKS 250