NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916832
Clone id YMU001_000092_C05
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAAGAGGGCTGCAGGAATAAGTCATGTGAGAACTTTGTCTTGGCGGAAATCAAGAAAGCG
AAGCTATGTCACAGATGATTTAATATTGTTTGTGATAGCAGCGGCAGTCCGTCAAAAGAG
GAAGTTGATTGAAAAGTGCAAAGGAATGGATGAAATTCTGAGAGAGTGCAATAGCATGGC
AGGGCATCTAGATGTATGGTCACTTTTAGATGACGCTCGGGAATTGGTTTCTGCTGTGCA
GGGTCGCATTCCGGAGTAGGGCTTTATCTCAAGCCGATGGTTCTTTGTCTTTATGACCTT
GTTATTCATGCGTGTGCGCGGGGCATATTGGACATAACACATTCCGACTCGCCCAAGACG
CATCGATGACATTTAACGGCTGAAGGTTGCTAACTGATAATAGACAATTGTTTAACCAGC
CTCGACAGCATTTAATCATGTGTAAAGCAATACTGAAAGCAAAAGAAATATACTGCGGGG
CAAGACCGATCCTC
■■Homology search results ■■ -
sp_hit_id A4VSK3
Definition sp|A4VSK3|RPOC_STRSY DNA-directed RNA polymerase subunit beta' OS=Streptococcus suis (strain 05ZYH33)
Align length 108
Score (bit) 32.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916832|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_C05.
         (494 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4VSK3|RPOC_STRSY DNA-directed RNA polymerase subunit beta' O...    32   1.2  
sp|A4VYU4|RPOC_STRS2 DNA-directed RNA polymerase subunit beta' O...    32   1.2  
sp|O74351|NFS1_SCHPO Probable cysteine desulfurase, mitochondria...    32   1.2  
sp|P04706|GLU2_MAIZE Glutelin-2 OS=Zea mays PE=1 SV=1                  30   4.6  
sp|Q6ZSB9|ZN509_HUMAN Zinc finger protein 509 OS=Homo sapiens GN...    30   6.0  
sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia ...    30   7.9  

>sp|A4VSK3|RPOC_STRSY DNA-directed RNA polymerase subunit beta'
           OS=Streptococcus suis (strain 05ZYH33) GN=rpoC PE=3 SV=2
          Length = 1215

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
 Frame = +2

Query: 20  SHVRTLSWRKSRKRSYVTDDLILFVI-----AAAVRQKRKLIEKCKGMDEILRECNSMA- 181
           SH R    +K  +R  +TDD     +     +A  + +++L+EK    + I+   +S A 
Sbjct: 676 SHERVEQIKKQFRRGMITDDERYAAVTDEWRSAKEKLEKRLVEKQDPKNPIVMMMDSGAR 735

Query: 182 GHLDVWSLLDDARELVSAVQGRIPE*GFISSRWFFVFMTLLFMRVRGA 325
           G++  +S L   R L+SA  GRI E   +S+    + +  +F    GA
Sbjct: 736 GNISNFSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFSTHGA 783


>sp|A4VYU4|RPOC_STRS2 DNA-directed RNA polymerase subunit beta'
           OS=Streptococcus suis (strain 98HAH33) GN=rpoC PE=3 SV=2
          Length = 1215

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
 Frame = +2

Query: 20  SHVRTLSWRKSRKRSYVTDDLILFVI-----AAAVRQKRKLIEKCKGMDEILRECNSMA- 181
           SH R    +K  +R  +TDD     +     +A  + +++L+EK    + I+   +S A 
Sbjct: 676 SHERVEQIKKQFRRGMITDDERYAAVTDEWRSAKEKLEKRLVEKQDPKNPIVMMMDSGAR 735

Query: 182 GHLDVWSLLDDARELVSAVQGRIPE*GFISSRWFFVFMTLLFMRVRGA 325
           G++  +S L   R L+SA  GRI E   +S+    + +  +F    GA
Sbjct: 736 GNISNFSQLAGMRGLMSAPNGRIMELPILSNFREGLSVLEMFFSTHGA 783


>sp|O74351|NFS1_SCHPO Probable cysteine desulfurase, mitochondrial
           OS=Schizosaccharomyces pombe GN=SPBC21D10.11c PE=2 SV=1
          Length = 498

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 239 AQQKPIPERHLKVTIHLDALPCYCTLSEFHPFLCTFQSTSSFD 111
           A Q+PIPE  LK      A     T++  HP    FQ+TS  D
Sbjct: 70  AVQEPIPENSLKTVTLDQAQTAASTVTGLHPIYMDFQATSPLD 112


>sp|P04706|GLU2_MAIZE Glutelin-2 OS=Zea mays PE=1 SV=1
          Length = 223

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = -1

Query: 260 PTPECDPAQQKPIPERHLKVTIHLDALPCYCTLSEFHPFLCTFQSTSSFDGLPLLSQTI 84
           P P C    Q P P+ H +        P  C   + HP  C  Q T      P+L Q +
Sbjct: 79  PPPPCHYPTQPPRPQPHPQ--------PHPCPCQQPHPSPCQLQGTCGVGSTPILGQCV 129


>sp|Q6ZSB9|ZN509_HUMAN Zinc finger protein 509 OS=Homo sapiens
           GN=ZNF509 PE=1 SV=2
          Length = 765

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 22/76 (28%), Positives = 31/76 (40%)
 Frame = -1

Query: 407 LSIIS*QPSAVKCHRCVLGESECVMSNMPRAHA*ITRS*RQRTIGLR*SPTPECDPAQQK 228
           L+ +  QP AV    C+L   E + SN        +            +P PE D   Q+
Sbjct: 249 LTTVESQPCAVSHSECILESPEHLPSNFLAQPVNDS------------APHPESDATCQQ 296

Query: 227 PIPERHLKVTIHLDAL 180
           P+ +  LK  IHL  L
Sbjct: 297 PVKQMRLKKAIHLKKL 312


>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia
           lipolytica GN=GYP7 PE=3 SV=2
          Length = 730

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 65  YVTDDLILFVIAAAV-RQKRKLIEKCKGMDEILRECNSMAGHLDVWSLL 208
           Y++   +LFV  A + + K  +I+   G DEIL+  N ++  +D+  LL
Sbjct: 619 YLSSQFVLFVCLAILDKHKDVMIDHLAGFDEILKYMNELSMTIDLDELL 667
tr_hit_id B8LR92
Definition tr|B8LR92|B8LR92_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 72
Score (bit) 92.4
E-value 1.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916832|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_C05.
         (494 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LR92|B8LR92_PICSI Putative uncharacterized protein OS=Picea...    92   1e-17
tr|A9NVH9|A9NVH9_PICSI Putative uncharacterized protein OS=Picea...    92   1e-17
tr|A7QEY2|A7QEY2_VITVI Chromosome chr16 scaffold_86, whole genom...    89   9e-17
tr|A7QJ65|A7QJ65_VITVI Chromosome chr2 scaffold_105, whole genom...    88   2e-16
tr|A5ADA4|A5ADA4_VITVI Putative uncharacterized protein OS=Vitis...    88   2e-16
tr|Q9FHY9|Q9FHY9_ARATH GTPase activator protein of Rab-like smal...    87   6e-16
tr|Q67YN2|Q67YN2_ARATH GTPase activator protein of Rab-like smal...    87   6e-16
tr|Q94HX6|Q94HX6_ORYSA Putative GTPase activating protein OS=Ory...    85   2e-15
tr|Q7XCR7|Q7XCR7_ORYSJ Os10g0518100 protein OS=Oryza sativa subs...    85   2e-15
tr|Q69NG6|Q69NG6_ORYSJ Os09g0528800 protein OS=Oryza sativa subs...    85   2e-15
tr|B8BHW1|B8BHW1_ORYSI Putative uncharacterized protein OS=Oryza...    85   2e-15
tr|A3C0V1|A3C0V1_ORYSJ Putative uncharacterized protein OS=Oryza...    85   2e-15
tr|A2Z3C3|A2Z3C3_ORYSI Putative uncharacterized protein OS=Oryza...    85   2e-15
tr|B4FIM1|B4FIM1_MAIZE Putative uncharacterized protein OS=Zea m...    84   3e-15
tr|Q6Z9D7|Q6Z9D7_ORYSJ Os08g0547200 protein OS=Oryza sativa subs...    84   4e-15
tr|B8B9D2|B8B9D2_ORYSI Putative uncharacterized protein OS=Oryza...    84   4e-15
tr|A3BVG7|A3BVG7_ORYSJ Putative uncharacterized protein OS=Oryza...    84   4e-15
tr|Q9SG14|Q9SG14_ARATH Putative GTPase activator protein of Rab-...    83   6e-15
tr|Q4V3B4|Q4V3B4_ARATH At3g49350 (GTPase activating-like protein...    83   6e-15
tr|B4FE62|B4FE62_MAIZE Putative uncharacterized protein OS=Zea m...    83   6e-15
tr|A3C6I1|A3C6I1_ORYSJ Putative uncharacterized protein OS=Oryza...    79   9e-14
tr|Q9FIN3|Q9FIN3_ARATH GTPase activator-like protein of Rab-like...    77   3e-13
tr|Q67XX9|Q67XX9_ARATH GTPase activator like protein of Rab-like...    77   3e-13
tr|Q0WLJ6|Q0WLJ6_ARATH GTPase activator-like protein of Rab-like...    77   3e-13
tr|A9RYK1|A9RYK1_PHYPA Predicted protein (Fragment) OS=Physcomit...    77   3e-13
tr|Q9FJC7|Q9FJC7_ARATH GTPase activator protein of Rab-like smal...    76   8e-13
tr|Q94BY9|Q94BY9_ARATH AT5g53570/MNC6_11 OS=Arabidopsis thaliana...    76   8e-13
tr|Q56WX5|Q56WX5_ARATH GTPase activator protein of Rab-like smal...    76   8e-13
tr|A9TX53|A9TX53_PHYPA Predicted protein (Fragment) OS=Physcomit...    68   2e-10
tr|A8PT81|A8PT81_MALGO Putative uncharacterized protein OS=Malas...    36   1.1  

>tr|B8LR92|B8LR92_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 455

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 44/72 (61%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
 Frame = +2

Query: 38  SWRKSRKRSYVTDDLILFVIAAAVRQKRKLI-EKCKGMDEILRECNSMAGHLDVWSLLDD 214
           +W+K ++R+  T DL+L+ IAA+V QKRKLI EK  GMD+ILRECN+MAGHLD+W LLDD
Sbjct: 384 AWKKGKQRAPPTSDLLLYAIAASVLQKRKLIIEKYTGMDDILRECNNMAGHLDIWKLLDD 443

Query: 215 ARELVSAVQGRI 250
           A  LV+A+  +I
Sbjct: 444 AHALVAALHNKI 455


>tr|A9NVH9|A9NVH9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 585

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 44/72 (61%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
 Frame = +2

Query: 38  SWRKSRKRSYVTDDLILFVIAAAVRQKRKLI-EKCKGMDEILRECNSMAGHLDVWSLLDD 214
           +W+K ++R+  T DL+L+ IAA+V QKRKLI EK  GMD+ILRECN+MAGHLD+W LLDD
Sbjct: 514 AWKKGKQRAPPTSDLLLYAIAASVLQKRKLIIEKYTGMDDILRECNNMAGHLDIWKLLDD 573

Query: 215 ARELVSAVQGRI 250
           A  LV+A+  +I
Sbjct: 574 AHALVAALHNKI 585


>tr|A7QEY2|A7QEY2_VITVI Chromosome chr16 scaffold_86, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037201001
           PE=4 SV=1
          Length = 513

 Score = 89.4 bits (220), Expect = 9e-17
 Identities = 44/72 (61%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
 Frame = +2

Query: 38  SWRKSRKRSYVTDDLILFVIAAAVRQKRKLI-EKCKGMDEILRECNSMAGHLDVWSLLDD 214
           +W + R+R+  TDDL+L+ IAA+V QKRKLI EK   MDEI+RECNSMAGHLDVW LL+D
Sbjct: 438 AWSRIRQRAPPTDDLLLYAIAASVLQKRKLIIEKYSSMDEIIRECNSMAGHLDVWKLLND 497

Query: 215 ARELVSAVQGRI 250
           A +LV ++  +I
Sbjct: 498 AHDLVVSLHDKI 509


>tr|A7QJ65|A7QJ65_VITVI Chromosome chr2 scaffold_105, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000523001
           PE=4 SV=1
          Length = 553

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
 Frame = +2

Query: 5   RAAGISHVRTLSWRKSRKRSYVTDDLILFVIAAAVRQKRKLI-EKCKGMDEILRECNSMA 181
           +AA  + +   +W + R R+  TDDL+L+ IAA V Q+RKLI EK   MDEI+RECNSMA
Sbjct: 471 QAAVRAGIAKSTWGRIRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIIRECNSMA 530

Query: 182 GHLDVWSLLDDARELVSAVQGRI 250
           GHLDVW LLDDA +LV  +  ++
Sbjct: 531 GHLDVWKLLDDAHDLVVTLHDKV 553


>tr|A5ADA4|A5ADA4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_025995 PE=4 SV=1
          Length = 266

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
 Frame = +2

Query: 5   RAAGISHVRTLSWRKSRKRSYVTDDLILFVIAAAVRQKRKLI-EKCKGMDEILRECNSMA 181
           +AA  + +   +W + R R+  TDDL+L+ IAA V Q+RKLI EK   MDEI+RECNSMA
Sbjct: 184 QAAVRAGIAKSTWGRIRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIIRECNSMA 243

Query: 182 GHLDVWSLLDDARELVSAVQGRI 250
           GHLDVW LLDDA +LV  +  ++
Sbjct: 244 GHLDVWKLLDDAHDLVVTLHDKV 266


>tr|Q9FHY9|Q9FHY9_ARATH GTPase activator protein of Rab-like small
           GTPases-like protein OS=Arabidopsis thaliana PE=4 SV=1
          Length = 506

 Score = 86.7 bits (213), Expect = 6e-16
 Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
 Frame = +2

Query: 5   RAAGISHVRTLSWRKSRKRSYVTDDLILFVIAAAVRQKRK-LIEKCKGMDEILRECNSMA 181
           +AA  + +   +W + R R+  T+DL+L+ IAA+V Q+RK +IEK  GMDEI++ECNSMA
Sbjct: 424 QAAIRTGIAKATWGRIRLRAPPTEDLLLYAIAASVLQRRKTIIEKYSGMDEIMKECNSMA 483

Query: 182 GHLDVWSLLDDARELVSAVQGRI 250
           GHLDVW LLDDA +LV  +  +I
Sbjct: 484 GHLDVWKLLDDAHDLVVNLHDKI 506


>tr|Q67YN2|Q67YN2_ARATH GTPase activator protein of Rab-like small
           GTPases-like protein OS=Arabidopsis thaliana
           GN=At5g41940 PE=2 SV=1
          Length = 549

 Score = 86.7 bits (213), Expect = 6e-16
 Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
 Frame = +2

Query: 5   RAAGISHVRTLSWRKSRKRSYVTDDLILFVIAAAVRQKRK-LIEKCKGMDEILRECNSMA 181
           +AA  + +   +W + R R+  T+DL+L+ IAA+V Q+RK +IEK  GMDEI++ECNSMA
Sbjct: 467 QAAIRTGIAKATWGRIRLRAPPTEDLLLYAIAASVLQRRKTIIEKYSGMDEIMKECNSMA 526

Query: 182 GHLDVWSLLDDARELVSAVQGRI 250
           GHLDVW LLDDA +LV  +  +I
Sbjct: 527 GHLDVWKLLDDAHDLVVNLHDKI 549


>tr|Q94HX6|Q94HX6_ORYSA Putative GTPase activating protein OS=Oryza
           sativa GN=OSJNBa0076F20.7 PE=4 SV=1
          Length = 586

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 46/83 (55%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
 Frame = +2

Query: 5   RAAGISHVRTLSWRKSRKRSYVTDDLILFVIAAAVRQKRKLI-EKCKGMDEILRECNSMA 181
           +AA  + +   S  K R  +  TDDL+L+ IAA+V QKRKLI E    MDEI+RECNSMA
Sbjct: 503 QAANRAGIAKSSLGKLRLGAPPTDDLLLYAIAASVLQKRKLIIESYSSMDEIIRECNSMA 562

Query: 182 GHLDVWSLLDDARELVSAVQGRI 250
           G LD+W LLDDA +LV+ + GRI
Sbjct: 563 GQLDIWKLLDDAHDLVTTLHGRI 585


>tr|Q7XCR7|Q7XCR7_ORYSJ Os10g0518100 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0518100 PE=2 SV=1
          Length = 586

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 46/83 (55%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
 Frame = +2

Query: 5   RAAGISHVRTLSWRKSRKRSYVTDDLILFVIAAAVRQKRKLI-EKCKGMDEILRECNSMA 181
           +AA  + +   S  K R  +  TDDL+L+ IAA+V QKRKLI E    MDEI+RECNSMA
Sbjct: 503 QAANRAGIAKSSLGKLRLGAPPTDDLLLYAIAASVLQKRKLIIESYSSMDEIIRECNSMA 562

Query: 182 GHLDVWSLLDDARELVSAVQGRI 250
           G LD+W LLDDA +LV+ + GRI
Sbjct: 563 GQLDIWKLLDDAHDLVTTLHGRI 585


>tr|Q69NG6|Q69NG6_ORYSJ Os09g0528800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1531_B07.10 PE=2 SV=1
          Length = 579

 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 44/65 (67%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
 Frame = +2

Query: 38  SWRKSRKRSYVTDDLILFVIAAAVRQKRKLI-EKCKGMDEILRECNSMAGHLDVWSLLDD 214
           +W K R R+  TDDL+L+ IAA V Q+RKLI EK   MDEILRECNSMAG LDVW LLDD
Sbjct: 508 TWAKIRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEILRECNSMAGQLDVWRLLDD 567

Query: 215 ARELV 229
           A +LV
Sbjct: 568 AHDLV 572