BP916835
Clone id YMU001_000092_C08
Library
Length 146
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATTGGAGGTGGTCCACAGGCTCCTAGGTCAGCTCTTCCCATTGGTGCAGAACCAACAGCA
GATCCCACGCGGGTGGTGCCTGTGAGCATCAGTCATGACCTTCTGCATTCAGTCCTTGCA
GTCTCTTATGCAGCTGAGCCAGATCA
■■Homology search results ■■ -
sp_hit_id Q99LI9
Definition sp|Q99LI9|CLP1_MOUSE Pre-mRNA cleavage complex II protein Clp1 OS=Mus musculus
Align length 42
Score (bit) 35.8
E-value 0.067
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916835|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_C08.
(146 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q99LI9|CLP1_MOUSE Pre-mRNA cleavage complex II protein Clp1 O... 36 0.067
sp|Q92989|CLP1_HUMAN Pre-mRNA cleavage complex II protein Clp1 O... 36 0.067

>sp|Q99LI9|CLP1_MOUSE Pre-mRNA cleavage complex II protein Clp1
OS=Mus musculus GN=Clp1 PE=2 SV=1
Length = 425

Score = 35.8 bits (81), Expect = 0.067
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1

Query: 7 GGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYA 132
G P P S LP+G + ++VPV+ D++H +L+VS A
Sbjct: 330 GAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSTA 371


>sp|Q92989|CLP1_HUMAN Pre-mRNA cleavage complex II protein Clp1
OS=Homo sapiens GN=CLP1 PE=1 SV=1
Length = 425

Score = 35.8 bits (81), Expect = 0.067
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1

Query: 7 GGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYA 132
G P P S LP+G + ++VPV+ D++H +L+VS A
Sbjct: 330 GAPTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHLLSVSTA 371


tr_hit_id A9RTM0
Definition tr|A9RTM0|A9RTM0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 84.3
E-value 3.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916835|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_C08.
(146 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RTM0|A9RTM0_PHYPA Predicted protein OS=Physcomitrella paten... 84 3e-15
tr|B8A358|B8A358_MAIZE Putative uncharacterized protein OS=Zea m... 78 3e-13
tr|B6U1P3|B6U1P3_MAIZE Pre-mRNA cleavage complex II protein Clp1... 78 3e-13
tr|B6TXK0|B6TXK0_MAIZE Pre-mRNA cleavage complex II protein Clp1... 78 3e-13
tr|B6T4T8|B6T4T8_MAIZE Pre-mRNA cleavage complex II protein Clp1... 78 3e-13
tr|A7PMM8|A7PMM8_VITVI Chromosome chr14 scaffold_21, whole genom... 75 2e-12
tr|Q6Z6M0|Q6Z6M0_ORYSJ Os02g0217500 protein OS=Oryza sativa subs... 71 2e-11
tr|B8AE77|B8AE77_ORYSI Putative uncharacterized protein OS=Oryza... 71 2e-11
tr|A3A4K5|A3A4K5_ORYSJ Putative uncharacterized protein OS=Oryza... 71 2e-11
tr|Q9SR06|Q9SR06_ARATH F7O18.15 protein OS=Arabidopsis thaliana ... 68 2e-10
tr|A4RTP7|A4RTP7_OSTLU Predicted protein OS=Ostreococcus lucimar... 61 3e-08
tr|Q01DD5|Q01DD5_OSTTA MRNA cleavage and polyadenylation factor ... 57 4e-07
tr|A8IWM5|A8IWM5_CHLRE mRNA cleavage and polyadenylation factor ... 52 2e-05
tr|Q54N48|Q54N48_DICDI Pre-mRNA cleavage complex subunit OS=Dict... 51 3e-05
tr|B4MRZ9|B4MRZ9_DROWI GK15921 OS=Drosophila willistoni GN=GK159... 41 0.035
tr|Q5ZJL4|Q5ZJL4_CHICK Putative uncharacterized protein OS=Gallu... 40 0.045
tr|B4MCL6|B4MCL6_DROVI GJ19681 OS=Drosophila virilis GN=GJ19681 ... 39 0.10
tr|Q7QJW7|Q7QJW7_ANOGA AGAP007701-PA OS=Anopheles gambiae GN=AGA... 39 0.17
tr|Q28ZT4|Q28ZT4_DROPS GA19268 OS=Drosophila pseudoobscura pseud... 39 0.17
tr|B4GGT6|B4GGT6_DROPE GL17071 OS=Drosophila persimilis GN=GL170... 39 0.17
tr|Q16WA6|Q16WA6_AEDAE Cleavage/polyadenylation factor ia subuni... 38 0.22
tr|B3RT55|B3RT55_TRIAD Putative uncharacterized protein OS=Trich... 38 0.22
tr|B0VZR4|B0VZR4_CULQU Pre-mRNA cleavage complex II protein Clp1... 38 0.22
tr|A7RG82|A7RG82_NEMVE Predicted protein OS=Nematostella vectens... 38 0.22
tr|Q7K284|Q7K284_DROME CG5970 OS=Drosophila melanogaster GN=CG59... 37 0.38
tr|B4QEE3|B4QEE3_DROSI GD25757 OS=Drosophila simulans GN=GD25757... 37 0.38
tr|B4P4H2|B4P4H2_DROYA GE13359 OS=Drosophila yakuba GN=GE13359 P... 37 0.38
tr|B4HQJ2|B4HQJ2_DROSE GM20275 OS=Drosophila sechellia GN=GM2027... 37 0.38
tr|B3MGZ0|B3MGZ0_DROAN GF11182 OS=Drosophila ananassae GN=GF1118... 37 0.50
tr|B4KML2|B4KML2_DROMO GI21336 OS=Drosophila mojavensis GN=GI213... 37 0.65

>tr|A9RTM0|A9RTM0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_119032 PE=4 SV=1
Length = 443

Score = 84.3 bits (207), Expect = 3e-15
Identities = 40/48 (83%), Positives = 43/48 (89%)
Frame = +1

Query: 1 IGGGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYAAEPD 144
IGGGPQAPRSALPIGAEPTADPTRVVPV S DLLH VLAVS+A +P+
Sbjct: 349 IGGGPQAPRSALPIGAEPTADPTRVVPVGFSRDLLHVVLAVSFAKDPE 396


>tr|B8A358|B8A358_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 412

Score = 77.8 bits (190), Expect = 3e-13
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +1

Query: 1 IGGGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYAAEPD 144
IGGG QAPRSALPIGAEP ADPTR+V V+IS D++H+VLA+SYA EP+
Sbjct: 344 IGGGHQAPRSALPIGAEPVADPTRLVAVNISTDMIHTVLAISYAKEPE 391


>tr|B6U1P3|B6U1P3_MAIZE Pre-mRNA cleavage complex II protein Clp1
OS=Zea mays PE=2 SV=1
Length = 422

Score = 77.8 bits (190), Expect = 3e-13
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +1

Query: 1 IGGGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYAAEPD 144
IGGG QAPRSALPIGAEP ADPTR+V V+IS D++H+VLA+SYA EP+
Sbjct: 327 IGGGHQAPRSALPIGAEPVADPTRLVAVNISTDMIHTVLAISYAKEPE 374


>tr|B6TXK0|B6TXK0_MAIZE Pre-mRNA cleavage complex II protein Clp1
OS=Zea mays PE=2 SV=1
Length = 439

Score = 77.8 bits (190), Expect = 3e-13
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +1

Query: 1 IGGGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYAAEPD 144
IGGG QAPRSALPIGAEP ADPTR+V V+IS D++H+VLA+SYA EP+
Sbjct: 344 IGGGHQAPRSALPIGAEPVADPTRLVAVNISTDMIHTVLAISYAKEPE 391


>tr|B6T4T8|B6T4T8_MAIZE Pre-mRNA cleavage complex II protein Clp1
OS=Zea mays PE=2 SV=1
Length = 439

Score = 77.8 bits (190), Expect = 3e-13
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +1

Query: 1 IGGGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYAAEPD 144
IGGG QAPRSALPIGAEP ADPTR+V V+IS D++H+VLA+SYA EP+
Sbjct: 344 IGGGHQAPRSALPIGAEPVADPTRLVAVNISTDMIHTVLAISYAKEPE 391


>tr|A7PMM8|A7PMM8_VITVI Chromosome chr14 scaffold_21, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00020879001
PE=4 SV=1
Length = 427

Score = 75.1 bits (183), Expect = 2e-12
Identities = 36/48 (75%), Positives = 41/48 (85%)
Frame = +1

Query: 1 IGGGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYAAEPD 144
IGGGPQAPRSALPIGAEP ADP R+V V+I+ D+LH VLAVS+A E D
Sbjct: 332 IGGGPQAPRSALPIGAEPAADPLRLVRVNINRDMLHLVLAVSFAKEAD 379


>tr|Q6Z6M0|Q6Z6M0_ORYSJ Os02g0217500 protein OS=Oryza sativa subsp.
japonica GN=P0027A02.1 PE=4 SV=1
Length = 432

Score = 71.2 bits (173), Expect = 2e-11
Identities = 34/46 (73%), Positives = 40/46 (86%)
Frame = +1

Query: 7 GGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYAAEPD 144
G QAP+SALPIGAEP ADPTR+V V+IS D++H+VLAVSYA EPD
Sbjct: 339 GTHQAPKSALPIGAEPVADPTRLVAVNISTDMVHTVLAVSYAKEPD 384


>tr|B8AE77|B8AE77_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06380 PE=4 SV=1
Length = 434

Score = 71.2 bits (173), Expect = 2e-11
Identities = 34/46 (73%), Positives = 40/46 (86%)
Frame = +1

Query: 7 GGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYAAEPD 144
G QAP+SALPIGAEP ADPTR+V V+IS D++H+VLAVSYA EPD
Sbjct: 341 GTHQAPKSALPIGAEPVADPTRLVAVNISTDMVHTVLAVSYAKEPD 386


>tr|A3A4K5|A3A4K5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_005727 PE=4 SV=1
Length = 454

Score = 71.2 bits (173), Expect = 2e-11
Identities = 34/46 (73%), Positives = 40/46 (86%)
Frame = +1

Query: 7 GGPQAPRSALPIGAEPTADPTRVVPVSISHDLLHSVLAVSYAAEPD 144
G QAP+SALPIGAEP ADPTR+V V+IS D++H+VLAVSYA EPD
Sbjct: 332 GTHQAPKSALPIGAEPVADPTRLVAVNISTDMVHTVLAVSYAKEPD 377


>tr|Q9SR06|Q9SR06_ARATH F7O18.15 protein OS=Arabidopsis thaliana
GN=At3g04680/F7O18.15 PE=2 SV=1
Length = 444

Score = 68.2 bits (165), Expect = 2e-10
Identities = 34/49 (69%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Frame = +1

Query: 1 IGGGPQAPRSALPIGAEPTADPTRVVPVSI-SHDLLHSVLAVSYAAEPD 144
IGGGPQAP+SALP G+ ++P RV PV+I DLLHSVLAVSYA EPD
Sbjct: 347 IGGGPQAPKSALPAGSTSVSNPLRVTPVNIDDRDLLHSVLAVSYAEEPD 395