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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916839
Clone id YMU001_000092_D02
Library
Length 321
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGAATCAGAAGCTTCAAGTGATCCAACTGAGTCACCGTATGCCAAAACCACAGACACTGG
CGTTGATCCAAGGGTAGTAGCTCGAAAAGTGAAGGTGGAATTTGATGCAGCAGCAGAAAT
TCAACCTGGAACAGAATCGGATGAGCCAGATGTACCTCCAGTAGTAGTAAGTAGCTGCCG
GCCCTTTTTAAAAAAGAATAGTTCGAAGAGTTGAGAAAGTCTTAAGTGGAAAACAATGAT
CCCCTGGTTTTGAGAAGGGAAGTCTTTGGTGTGGGCTGCTGCGTCGAAGCATGCAAGTAT
TATGATTTGTGATCTGGACAA
■■Homology search results ■■ -
sp_hit_id Q92337
Definition sp|Q92337|ABC1_SCHPO ATP-binding cassette transporter abc1 OS=Schizosaccharomyces pombe
Align length 47
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916839|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_D02.
         (321 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92337|ABC1_SCHPO ATP-binding cassette transporter abc1 OS=Sc...    32   1.3  

>sp|Q92337|ABC1_SCHPO ATP-binding cassette transporter abc1
           OS=Schizosaccharomyces pombe GN=abc1 PE=2 SV=1
          Length = 1427

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -2

Query: 236 LFST*DFLNSSNYSFLKRAGSYLLLLEVHLAHPILFQVEFLLLHQIP 96
           L S  DFL  S++SF  + GS+LLLL      P+ + +   LL  IP
Sbjct: 132 LISIYDFLTYSSWSFSVKGGSFLLLL------PLAYNITLFLLVIIP 172
tr_hit_id A9T9I7
Definition tr|A9T9I7|A9T9I7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 44
Score (bit) 57.0
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916839|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_D02.
         (321 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T9I7|A9T9I7_PHYPA Predicted protein OS=Physcomitrella paten...    57   5e-07
tr|A7Q7P4|A7Q7P4_VITVI Chromosome chr18 scaffold_61, whole genom...    43   0.007
tr|A5AGX7|A5AGX7_VITVI Putative uncharacterized protein OS=Vitis...    43   0.007
tr|Q5VQL0|Q5VQL0_ORYSJ Putative uncharacterized protein P0691E06...    43   0.009
tr|Q5VQK9|Q5VQK9_ORYSJ cDNA clone:J013138A22, full insert sequen...    43   0.009
tr|B8AAV3|B8AAV3_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.009
tr|B6SMC4|B6SMC4_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.009
tr|A2ZYN4|A2ZYN4_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.009
tr|Q9LU01|Q9LU01_ARATH Genomic DNA, chromosome 5, TAC clone:K15C...    42   0.015
tr|Q8LDA8|Q8LDA8_ARATH Putative uncharacterized protein OS=Arabi...    42   0.015
tr|A0YN58|A0YN58_9CYAN ATP phosphoribosyltransferase regulatory ...    33   7.1  
tr|A6AT87|A6AT87_VIBHA Putative glucose-1-phosphate adenylyltran...    33   9.2  

>tr|A9T9I7|A9T9I7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_142249 PE=4 SV=1
          Length = 172

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 28/44 (63%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
 Frame = +2

Query: 2   ESEASS-DPTESPYAKTTDTGVDPRVVARKVKVEFDAAAEIQPG 130
           E E S  +P  SPYAK T TGVDP+V A++ KV++DAAAEIQPG
Sbjct: 86  EDEISEVNPLASPYAKVTPTGVDPKVAAQRAKVDWDAAAEIQPG 129


>tr|A7Q7P4|A7Q7P4_VITVI Chromosome chr18 scaffold_61, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031940001
           PE=4 SV=1
          Length = 254

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 18/33 (54%), Positives = 28/33 (84%)
 Frame = +2

Query: 26  TESPYAKTTDTGVDPRVVARKVKVEFDAAAEIQ 124
           ++S YAK TDTGVDPR  A+++ +++D+AAEI+
Sbjct: 179 SKSLYAKATDTGVDPREAAKRLNMDWDSAAEIE 211


>tr|A5AGX7|A5AGX7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019177 PE=4 SV=1
          Length = 259

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 18/33 (54%), Positives = 28/33 (84%)
 Frame = +2

Query: 26  TESPYAKTTDTGVDPRVVARKVKVEFDAAAEIQ 124
           ++S YAK TDTGVDPR  A+++ +++D+AAEI+
Sbjct: 184 SKSLYAKATDTGVDPREAAKRLNMDWDSAAEIE 216


>tr|Q5VQL0|Q5VQL0_ORYSJ Putative uncharacterized protein
           P0691E06.11-2 OS=Oryza sativa subsp. japonica
           GN=P0691E06.11-2 PE=4 SV=1
          Length = 270

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 16/35 (45%), Positives = 27/35 (77%)
 Frame = +2

Query: 17  SDPTESPYAKTTDTGVDPRVVARKVKVEFDAAAEI 121
           S P +S YAK TDTG+DP   A+++ +++D+AA++
Sbjct: 191 SKPGKSVYAKATDTGIDPETAAKRLNIDWDSAADL 225


>tr|Q5VQK9|Q5VQK9_ORYSJ cDNA clone:J013138A22, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0691E06.11-1 PE=2
           SV=1
          Length = 292

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 16/35 (45%), Positives = 27/35 (77%)
 Frame = +2

Query: 17  SDPTESPYAKTTDTGVDPRVVARKVKVEFDAAAEI 121
           S P +S YAK TDTG+DP   A+++ +++D+AA++
Sbjct: 213 SKPGKSVYAKATDTGIDPETAAKRLNIDWDSAADL 247


>tr|B8AAV3|B8AAV3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04075 PE=4 SV=1
          Length = 292

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 16/35 (45%), Positives = 27/35 (77%)
 Frame = +2

Query: 17  SDPTESPYAKTTDTGVDPRVVARKVKVEFDAAAEI 121
           S P +S YAK TDTG+DP   A+++ +++D+AA++
Sbjct: 213 SKPGKSVYAKATDTGIDPETAAKRLNIDWDSAADL 247


>tr|B6SMC4|B6SMC4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 291

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 17/35 (48%), Positives = 27/35 (77%)
 Frame = +2

Query: 17  SDPTESPYAKTTDTGVDPRVVARKVKVEFDAAAEI 121
           S P +S YAK TDTG+DP   A+++ +++D+AA+I
Sbjct: 212 SKPGKSVYAKATDTGIDPETAAKRLNLDWDSAADI 246


>tr|A2ZYN4|A2ZYN4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_003656 PE=4 SV=1
          Length = 539

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 16/35 (45%), Positives = 27/35 (77%)
 Frame = +2

Query: 17  SDPTESPYAKTTDTGVDPRVVARKVKVEFDAAAEI 121
           S P +S YAK TDTG+DP   A+++ +++D+AA++
Sbjct: 213 SKPGKSVYAKATDTGIDPETAAKRLNIDWDSAADL 247


>tr|Q9LU01|Q9LU01_ARATH Genomic DNA, chromosome 5, TAC clone:K15C23
           (Putative uncharacterized protein At5g44650)
           OS=Arabidopsis thaliana GN=At5g44650 PE=2 SV=1
          Length = 280

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 17/32 (53%), Positives = 27/32 (84%)
 Frame = +2

Query: 29  ESPYAKTTDTGVDPRVVARKVKVEFDAAAEIQ 124
           +S YAK+TDTG+DP+  A+++ VE+D+AA I+
Sbjct: 205 KSMYAKSTDTGIDPKEAAKRLNVEWDSAAAIE 236


>tr|Q8LDA8|Q8LDA8_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 280

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 17/32 (53%), Positives = 27/32 (84%)
 Frame = +2

Query: 29  ESPYAKTTDTGVDPRVVARKVKVEFDAAAEIQ 124
           +S YAK+TDTG+DP+  A+++ VE+D+AA I+
Sbjct: 205 KSMYAKSTDTGIDPKEAAKRLNVEWDSAAAIE 236