BP916842
Clone id YMU001_000092_D09
Library
Length 351
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATCGAGGTTTACACCCACTTTGCCATACTTTTGGTTGACAGATTTTTGGTCATTTTGAAG
TGGTCGAGATCATCTCCCACTTCGGCATCTTGGATGCAGTTTCATGGTTGAGATTTGAGT
TGAGTTTATGCTCCTCACGTAGGGGGAACTCTGCACGTTTTCCCAAGATTCTCACCATGT
TTTCTACATATCTGTAGTTTACTCTTTGATTGTGTAGTGGTCGAGTGTGACTCCCACTTT
GTCAACAATCGAGTTTTGACTCTCACTTTGACAGGTTTTGTCAGTTTCGGACACAGATTG
GTGTATTGTATCCACTCTTACACGAGTGACACTTATGTATGCTCGTAGTGG
■■Homology search results ■■ -
sp_hit_id Q4L7H9
Definition sp|Q4L7H9|RECX_STAHJ Regulatory protein recX OS=Staphylococcus haemolyticus (strain JCSC1435)
Align length 38
Score (bit) 32.7
E-value 0.57
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916842|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_D09.
(351 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4L7H9|RECX_STAHJ Regulatory protein recX OS=Staphylococcus h... 33 0.57
sp|P16415|ZN823_HUMAN Zinc finger protein 823 OS=Homo sapiens GN... 30 2.8
sp|Q12280|IQG1_YEAST Ras GTPase-activating-like protein IQG1 OS=... 30 2.8
sp|P34739|TTF2_DROME Transcription termination factor 2 OS=Droso... 30 4.8
sp|Q9P7H8|YLK1_SCHPO Uncharacterized protein C1782.01 OS=Schizos... 29 6.3
sp|Q895L2|RS2_CLOTE 30S ribosomal protein S2 OS=Clostridium teta... 29 6.3
sp|Q96BY7|ATG2B_HUMAN Autophagy-related protein 2 homolog B OS=H... 29 8.2

>sp|Q4L7H9|RECX_STAHJ Regulatory protein recX OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=recX PE=3 SV=1
Length = 267

Score = 32.7 bits (73), Expect = 0.57
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = -3

Query: 118 SNLNHETASKMPKWEMISTTSK*PKICQPKVWQSGCKP 5
S +NHE ++ K MI+TT K P+I + K++Q G +P
Sbjct: 105 SYINHEDYAESLKNTMINTTDKGPEIFRQKLYQVGIEP 142


>sp|P16415|ZN823_HUMAN Zinc finger protein 823 OS=Homo sapiens
GN=ZNF823 PE=2 SV=2
Length = 610

Score = 30.4 bits (67), Expect = 2.8
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = -3

Query: 337 HKCHSCKSGYNTPICVRN*QNLSK*ESKLDC*QSG---SHTRPLHNQRVNY 194
HKC C G++ P VRN + E +C Q G SH+ + + +
Sbjct: 332 HKCKICGKGFDCPSSVRNHETTHTGEKPYECKQCGKVLSHSSSFRSHMITH 382


>sp|Q12280|IQG1_YEAST Ras GTPase-activating-like protein IQG1
OS=Saccharomyces cerevisiae GN=IQG1 PE=1 SV=1
Length = 1495

Score = 30.4 bits (67), Expect = 2.8
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3

Query: 238 SGSHTRPLHNQRVNYRYVENMVRILGKRAEFPLREE--HKLNSNLNHETASKMPKWEMIS 65
SGS ++P +N RYVEN LG PLR + K+NS+LN + S + S
Sbjct: 5 SGSPSKPGNNNSYLNRYVEN----LGTNVTPPLRPQSSSKINSSLNIASPSHLKTKTSAS 60

Query: 64 TTS 56
+S
Sbjct: 61 NSS 63


>sp|P34739|TTF2_DROME Transcription termination factor 2
OS=Drosophila melanogaster GN=lds PE=1 SV=2
Length = 1061

Score = 29.6 bits (65), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2

Query: 248 LLTKWESHSTTTQSKSKLQICRKHGEN 168
LL +WES + S+ KL +C HG N
Sbjct: 535 LLRQWESEVESKVSRQKLTVCVHHGNN 561


>sp|Q9P7H8|YLK1_SCHPO Uncharacterized protein C1782.01
OS=Schizosaccharomyces pombe GN=SPAC1782.01 PE=2 SV=1
Length = 1679

Score = 29.3 bits (64), Expect = 6.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1

Query: 1 IEVYTHFAILLVDRFLVILKWSRSSPTSASWMQF 102
+ +Y+ ILL+ + L++ KW P +A+ ++F
Sbjct: 1426 VNLYSEEIILLIQKNLIVTKWDVKRPAAAALLEF 1459


>sp|Q895L2|RS2_CLOTE 30S ribosomal protein S2 OS=Clostridium tetani
GN=rpsB PE=3 SV=1
Length = 233

Score = 29.3 bits (64), Expect = 6.3
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1

Query: 220 VECDSHFVNNRVLTLTLTGFVSFGHRL 300
V CD HFVNNR L LT F + R+
Sbjct: 85 VRCDMHFVNNRWLGGMLTNFSTIKGRI 111


>sp|Q96BY7|ATG2B_HUMAN Autophagy-related protein 2 homolog B OS=Homo
sapiens GN=ATG2B PE=1 SV=4
Length = 2078

Score = 28.9 bits (63), Expect = 8.2
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Frame = -2

Query: 254 TRLLTKWESHSTTTQSKSKLQICRKHGENLG------KTCRVPPT*GA*TQLKSQP*NCI 93
T LLT T + S LQ+ KH EN G + VP A Q+K P C
Sbjct: 626 TELLTFHSKEETGSHSPVCLQLHYKHSENRGPQGNQARLSSVPHK--AELQIKLNPVCCE 683

Query: 92 QDAEVGDDLDHFKMTKNLSTKSM 24
D + D L+ + L+T M
Sbjct: 684 LDISIVDRLNSLLQPQKLATVEM 706


tr_hit_id Q12TX7
Definition tr|Q12TX7|Q12TX7_METBU Nucleotidyl transferase OS=Methanococcoides burtonii (strain DSM 6242)
Align length 54
Score (bit) 36.2
E-value 0.83
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916842|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_D09.
(351 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q12TX7|Q12TX7_METBU Nucleotidyl transferase OS=Methanococcoid... 36 0.83

>tr|Q12TX7|Q12TX7_METBU Nucleotidyl transferase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_2236 PE=4 SV=1
Length = 328

Score = 36.2 bits (82), Expect = 0.83
Identities = 24/54 (44%), Positives = 26/54 (48%)
Frame = +1

Query: 181 FLHICSLLFDCVVVECDSHFVNNRVLTLTLTGFVSFGHRLVYCIHSYTSDTYVC 342
FL S+LFD + D H N LT L G VS GHRL H Y S Y C
Sbjct: 149 FLKEPSVLFDILEKMVDEHTGNEIQLTDALQGMVSSGHRLK---HFYVSSWYDC 199