BP916843
Clone id YMU001_000092_D11
Library
Length 355
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACAGGTTACAATAGGGCGGTAGAGGCTCAACAATGCATGAAGTGTGCTCTGAGACTATGT
GACGGACTCAAGACCCTAGACCTAGGTAGATTAACAATCCTGACCGATAACATCCATAAT
TTATTCAAGAACCAAATACCTACAAGAAGGGATAAGTTCAGTGGACTAGGATGAAGAATA
GTCTAGATAGGTGACTACCTACCTAGGCTACATGGCTACCACCCATCCACCTACCGCTCT
GCCCTCCAGAGGGACTTGCTCTATCGTCGACTTGCCCGACCATGCAGAGTCCACCATTCG
ACTTGCTCTATCATCGACGGAGCAAGCACGCCTTGCACCAAAGGTGGAACGCCTT
■■Homology search results ■■ -
sp_hit_id Q31Y82
Definition sp|Q31Y82|YFEO_SHIBS Putative ion-transport protein yfeO OS=Shigella boydii serotype 4 (strain Sb227)
Align length 50
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916843|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_D11.
(355 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q31Y82|YFEO_SHIBS Putative ion-transport protein yfeO OS=Shig... 31 1.7
sp|Q3YZE3|YFEO_SHISS Putative ion-transport protein yfeO OS=Shig... 31 2.2
sp|Q0T2B0|YFEO_SHIF8 Putative ion-transport protein yfeO OS=Shig... 31 2.2
sp|Q1R8X7|YFEO_ECOUT Putative ion-transport protein yfeO OS=Esch... 31 2.2
sp|P67729|YFEO_ECOLI Putative ion-transport protein yfeO OS=Esch... 31 2.2
sp|B1IX73|YFEO_ECOLC Putative ion-transport protein yfeO OS=Esch... 31 2.2
sp|A1ADR5|YFEO_ECOK1 Putative ion-transport protein yfeO OS=Esch... 31 2.2
sp|A8A2P3|YFEO_ECOHS Putative ion-transport protein yfeO OS=Esch... 31 2.2
sp|P67730|YFEO_ECO57 Putative ion-transport protein yfeO OS=Esch... 31 2.2
sp|A7ZPJ9|YFEO_ECO24 Putative ion-transport protein yfeO OS=Esch... 31 2.2
sp|P59585|YFEO_SHIFL Putative ion-transport protein yfeO OS=Shig... 30 2.9
sp|Q8FFD3|YFEO_ECOL6 Putative ion-transport protein yfeO OS=Esch... 30 2.9
sp|Q0TF71|YFEO_ECOL5 Putative ion-transport protein yfeO OS=Esch... 30 2.9

>sp|Q31Y82|YFEO_SHIBS Putative ion-transport protein yfeO
OS=Shigella boydii serotype 4 (strain Sb227) GN=yfeO
PE=3 SV=1
Length = 418

Score = 31.2 bits (69), Expect = 1.7
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2

Query: 227 PPTALPSRGTCSIVDL-------PDHAESTIRLALSSTEQARLAPKVERL 355
PP+ALP I+ L P+H TI +AL+ ARL P+V R+
Sbjct: 96 PPSALPGLIVALILGLAGGVSLGPEHPIMTINIALAVAIGARLLPRVNRM 145


>sp|Q3YZE3|YFEO_SHISS Putative ion-transport protein yfeO
OS=Shigella sonnei (strain Ss046) GN=yfeO PE=3 SV=1
Length = 418

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2

Query: 227 PPTALPSRGTCSIVDL-------PDHAESTIRLALSSTEQARLAPKVERL 355
PP+ALP I+ L P+H T+ +AL+ ARL P+V R+
Sbjct: 96 PPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRM 145


>sp|Q0T2B0|YFEO_SHIF8 Putative ion-transport protein yfeO
OS=Shigella flexneri serotype 5b (strain 8401) GN=yfeO
PE=3 SV=1
Length = 418

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2

Query: 227 PPTALPSRGTCSIVDL-------PDHAESTIRLALSSTEQARLAPKVERL 355
PP+ALP I+ L P+H T+ +AL+ ARL P+V R+
Sbjct: 96 PPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRM 145


>sp|Q1R8X7|YFEO_ECOUT Putative ion-transport protein yfeO
OS=Escherichia coli (strain UTI89 / UPEC) GN=yfeO PE=3
SV=1
Length = 418

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2

Query: 227 PPTALPSRGTCSIVDL-------PDHAESTIRLALSSTEQARLAPKVERL 355
PP+ALP I+ L P+H T+ +AL+ ARL P+V R+
Sbjct: 96 PPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRM 145


>sp|P67729|YFEO_ECOLI Putative ion-transport protein yfeO
OS=Escherichia coli (strain K12) GN=yfeO PE=3 SV=1
Length = 418

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2

Query: 227 PPTALPSRGTCSIVDL-------PDHAESTIRLALSSTEQARLAPKVERL 355
PP+ALP I+ L P+H T+ +AL+ ARL P+V R+
Sbjct: 96 PPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRM 145


>sp|B1IX73|YFEO_ECOLC Putative ion-transport protein yfeO
OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
Crooks) GN=yfeO PE=3 SV=1
Length = 418

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2

Query: 227 PPTALPSRGTCSIVDL-------PDHAESTIRLALSSTEQARLAPKVERL 355
PP+ALP I+ L P+H T+ +AL+ ARL P+V R+
Sbjct: 96 PPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRM 145


>sp|A1ADR5|YFEO_ECOK1 Putative ion-transport protein yfeO
OS=Escherichia coli O1:K1 / APEC GN=yfeO PE=3 SV=1
Length = 418

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2

Query: 227 PPTALPSRGTCSIVDL-------PDHAESTIRLALSSTEQARLAPKVERL 355
PP+ALP I+ L P+H T+ +AL+ ARL P+V R+
Sbjct: 96 PPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRM 145


>sp|A8A2P3|YFEO_ECOHS Putative ion-transport protein yfeO
OS=Escherichia coli O9:H4 (strain HS) GN=yfeO PE=3 SV=1
Length = 418

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2

Query: 227 PPTALPSRGTCSIVDL-------PDHAESTIRLALSSTEQARLAPKVERL 355
PP+ALP I+ L P+H T+ +AL+ ARL P+V R+
Sbjct: 96 PPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRM 145


>sp|P67730|YFEO_ECO57 Putative ion-transport protein yfeO
OS=Escherichia coli O157:H7 GN=yfeO PE=3 SV=1
Length = 418

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2

Query: 227 PPTALPSRGTCSIVDL-------PDHAESTIRLALSSTEQARLAPKVERL 355
PP+ALP I+ L P+H T+ +AL+ ARL P+V R+
Sbjct: 96 PPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRM 145


>sp|A7ZPJ9|YFEO_ECO24 Putative ion-transport protein yfeO
OS=Escherichia coli O139:H28 (strain E24377A / ETEC)
GN=yfeO PE=3 SV=1
Length = 418

Score = 30.8 bits (68), Expect = 2.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = +2

Query: 227 PPTALPSRGTCSIVDL-------PDHAESTIRLALSSTEQARLAPKVERL 355
PP+ALP I+ L P+H T+ +AL+ ARL P+V R+
Sbjct: 96 PPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRM 145


tr_hit_id Q5Z8Y1
Definition tr|Q5Z8Y1|Q5Z8Y1_ORYSJ Putative uncharacterized protein P0596H10.7 OS=Oryza sativa subsp. japonica
Align length 59
Score (bit) 35.8
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916843|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_D11.
(355 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5Z8Y1|Q5Z8Y1_ORYSJ Putative uncharacterized protein P0596H10... 36 1.1
tr|Q8UVD6|Q8UVD6_DANRE Brother of CDO OS=Danio rerio GN=boc PE=2... 35 2.4
tr|A3YTS5|A3YTS5_9SYNE Putative uncharacterized protein OS=Synec... 33 9.4

>tr|Q5Z8Y1|Q5Z8Y1_ORYSJ Putative uncharacterized protein P0596H10.7
OS=Oryza sativa subsp. japonica GN=P0596H10.7 PE=4 SV=1
Length = 643

Score = 35.8 bits (81), Expect = 1.1
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3

Query: 159 QWTRMKNSLDR*LPT*ATWLPPIHLPLCPPEGLALSSTCPTMQSPPFDLLY---HRRSK 326
+W R + R WLPP+ LP PP A+++ CP SPP L HR S+
Sbjct: 80 RWRRRERREQRVADGLLLWLPPLRLPASPPPPAAITARCPF--SPPGTALLPAAHRSSR 136


>tr|Q8UVD6|Q8UVD6_DANRE Brother of CDO OS=Danio rerio GN=boc PE=2
SV=1
Length = 1032

Score = 34.7 bits (78), Expect = 2.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3

Query: 162 WTRMKNSLDR*LPT*ATWLPPIHLPLCPPEGLALSSTCP 278
W + K +LD PT A + P + P +GLAL CP
Sbjct: 839 WAKQKQTLDMRFPTLAATVSPCQYTMVPLQGLALGRACP 877


>tr|A3YTS5|A3YTS5_9SYNE Putative uncharacterized protein
OS=Synechococcus sp. WH 5701 GN=WH5701_04175 PE=4 SV=1
Length = 568

Score = 32.7 bits (73), Expect = 9.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2

Query: 206 GYMATTHPPTALPSRGTCSIVD-LPDHAESTIRLALSSTEQARLA 337
GY A P R + + PD+ E TIR+A+SST + LA
Sbjct: 492 GYSAVYDSAVGAPQRANITAIPGTPDYTEQTIRMAISSTSKPHLA 536