| BP916846 |
| Clone id |
YMU001_000092_E04 |
| Library |
YMU01 |
| Length |
445 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000092_E04. |
| Accession |
BP916846 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
CCAAGTTACATTGGCATGATTTGAACTTGCTCGCCTAGCTCTCTACAAATAATCTCTTTT
TCTCCCTCTTCGTTGCATTACTTTGTATCCAAGATAGATAACATTGCAATAATTTTTGAA
ATTTCATCATTGCAACCGAAACCCACACTACCAAGCAACGTTTTTTATTAACACAAAGGA
GCCTCAATAATCTTCATTCCCAAATTACCTTGGAGCACTACGATAAACAAGGCAACCCCT
AGCATTCTACAATTGTTGGCTAAGCTAGGAAGCCAAGGAAGATGCATATTGCTGATATAC
TAAGTCCATGTTTTGTTGCCCACACAACCTTTGAAAACACCACCACAAGCTTGATATTCA
GCATACCATCAATCCCTATTGTTGATGTCATCATGAGCAAATATTGACGCTAAGAAAGTA
AGCAATTGCAACATACAATCGCAGT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q54F05 |
| Definition |
sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum |
| Align length |
39 |
| Score (bit) |
33.5 |
| E-value |
0.41 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q6BRT9 |
| Definition |
tr|Q6BRT9|Q6BRT9_DEBHA DEHA2D13882p OS=Debaryomyces hansenii |
| Align length |
39 |
| Score (bit) |
37.4 |
| E-value |
0.37 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916846|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_E04.
(445 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q6BRT9|Q6BRT9_DEBHA DEHA2D13882p OS=Debaryomyces hansenii GN=... 37 0.37
tr|A8XLM7|A8XLM7_CAEBR Putative uncharacterized protein OS=Caeno... 34 3.1
tr|B6K8E7|B6K8E7_SCHJP Pre-mRNA-splicing factor ATP-dependent RN... 34 3.1
tr|A5DB53|A5DB53_PICGU Putative uncharacterized protein OS=Pichi... 34 3.1
tr|A8Q9X2|A8Q9X2_BRUMA Probable ATP-dependent helicase DHX35, pu... 34 4.1
tr|Q6FTI2|Q6FTI2_CANGA Strain CBS138 chromosome G complete seque... 33 5.4
tr|Q1E9M0|Q1E9M0_COCIM Putative uncharacterized protein OS=Cocci... 33 5.4
tr|Q6CF95|Q6CF95_YARLI YALI0B09053p OS=Yarrowia lipolytica GN=YA... 33 7.0
tr|A8NV89|A8NV89_COPC7 Putative uncharacterized protein OS=Copri... 33 7.0
tr|Q01B22|Q01B22_OSTTA DHX8_ARATH Putative pre-mRNA splicing fac... 33 9.2
>tr|Q6BRT9|Q6BRT9_DEBHA DEHA2D13882p OS=Debaryomyces hansenii
GN=DEHA2D13882g PE=4 SV=2
Length = 1147
Score = 37.4 bits (85), Expect = 0.37
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = -3
Query: 203 LGMKIIEAPL--C**KTLLGSVGFGCNDEISKIIAMLSI 93
LG K+ E P+ KTL+ SV FGC+DEI I+AMLS+
Sbjct: 895 LGRKMAEFPMEPALAKTLIISVDFGCSDEILTIVAMLSV 933
>tr|A8XLM7|A8XLM7_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG15221 PE=4 SV=2
Length = 722
Score = 34.3 bits (77), Expect = 3.1
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = -3
Query: 203 LGMKIIEAPL--C**KTLLGSVGFGCNDEISKIIAMLSILD 87
LG+++ E PL K LL S FGC+DEI I+AM+ I D
Sbjct: 498 LGLQMAEFPLPPMHSKCLLKSAEFGCSDEIVTIVAMMQIQD 538
>tr|B6K8E7|B6K8E7_SCHJP Pre-mRNA-splicing factor ATP-dependent RNA
helicase prp22 OS=Schizosaccharomyces japonicus yFS275
GN=SJAG_05025 PE=4 SV=1
Length = 1082
Score = 34.3 bits (77), Expect = 3.1
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -3
Query: 164 KTLLGSVGFGCNDEISKIIAMLSI 93
K LL SV +GC+DEI IIAMLS+
Sbjct: 852 KVLLKSVEYGCSDEILSIIAMLSV 875
>tr|A5DB53|A5DB53_PICGU Putative uncharacterized protein OS=Pichia
guilliermondii GN=PGUG_00508 PE=4 SV=2
Length = 1115
Score = 34.3 bits (77), Expect = 3.1
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = -3
Query: 164 KTLLGSVGFGCNDEISKIIAMLSI 93
KTL+ SV FGC+++I I+AMLS+
Sbjct: 874 KTLIASVEFGCSEDILSIVAMLSV 897
>tr|A8Q9X2|A8Q9X2_BRUMA Probable ATP-dependent helicase DHX35,
putative OS=Brugia malayi GN=Bm1_47285 PE=4 SV=1
Length = 693
Score = 33.9 bits (76), Expect = 4.1
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = -3
Query: 218 VLQGNLGMKIIEAPLC**--KTLLGSVGFGCNDEISKIIAMLSILD 87
+L LG+++I+ PL KTLL S GC++EI+ IIAML I D
Sbjct: 477 LLTNPLGIQMIDFPLPPQHSKTLLCSGELGCSEEIATIIAMLQIQD 522
>tr|Q6FTI2|Q6FTI2_CANGA Strain CBS138 chromosome G complete sequence
OS=Candida glabrata GN=CAGL0G02299g PE=4 SV=1
Length = 1057
Score = 33.5 bits (75), Expect = 5.4
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -3
Query: 203 LGMKIIEAPL--C**KTLLGSVGFGCNDEISKIIAMLSILDTK*CNEEGEKE 54
LG K++ PL K L+ S+ FGC+ E+ I+AMLS+ +E +KE
Sbjct: 764 LGKKMVNFPLQPTLSKVLIQSISFGCSKEVVTIVAMLSVPQVFERPKERQKE 815
>tr|Q1E9M0|Q1E9M0_COCIM Putative uncharacterized protein
OS=Coccidioides immitis GN=CIMG_00743 PE=4 SV=1
Length = 1215
Score = 33.5 bits (75), Expect = 5.4
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 203 LGMKIIEAPL--C**KTLLGSVGFGCNDEISKIIAMLSI 93
LG K+ + P+ K L+ SV GC+DE+ I+AMLS+
Sbjct: 962 LGRKMADFPMEPALAKVLIASVDMGCSDEVLSIVAMLSV 1000
>tr|Q6CF95|Q6CF95_YARLI YALI0B09053p OS=Yarrowia lipolytica
GN=YALI0B09053g PE=4 SV=1
Length = 1077
Score = 33.1 bits (74), Expect = 7.0
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 203 LGMKIIEAPL--C**KTLLGSVGFGCNDEISKIIAMLSI 93
LGMK+ + P+ C K L+ SV +GC+ E+ ++AML +
Sbjct: 815 LGMKMSQFPMDPCLGKILIKSVDYGCSKEMLSVVAMLCV 853
>tr|A8NV89|A8NV89_COPC7 Putative uncharacterized protein
OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
9003) GN=CC1G_06213 PE=4 SV=1
Length = 722
Score = 33.1 bits (74), Expect = 7.0
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Frame = -3
Query: 212 QGN---LGMKIIEAPLC**--KTLLGSVGFGCNDEISKIIAMLSI 93
QGN LG + E PL KTL+ S +GC+DEI I+AMLS+
Sbjct: 477 QGNITPLGSMMAEYPLDPQMAKTLIVSPNYGCSDEILTIVAMLSV 521
>tr|Q01B22|Q01B22_OSTTA DHX8_ARATH Putative pre-mRNA splicing factor
ATP-dep (ISS) (Fragment) OS=Ostreococcus tauri
GN=Ot04g02270 PE=4 SV=1
Length = 1090
Score = 32.7 bits (73), Expect = 9.2
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -3
Query: 203 LGMKIIEAPL--C**KTLLGSVGFGCNDEISKIIAMLS 96
LG K+ E PL K L+ SV GC+DEI I+AMLS
Sbjct: 896 LGRKMAEFPLEPQMSKMLIASVDIGCSDEILTIVAMLS 933
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