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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916848
Clone id YMU001_000092_E06
Library
Length 374
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGTATTTGTGGAGAGAAAACCTAAGATACTGAAGACCTTGCCATCTTTCAAAGGTCAGC
ATGAAATGAAAATGGAGATCAAAGTAGTGCCTTCCAAATGGAAGCCAATTCCAAAGATGG
TGTACACCAAAAGCCTTCAAGAATTGATATCAATTCTTATACAATGCATGATAAGTCTCT
CAAAGTTGTTTTACAAATTAGACCACATTTATGGGGTGAAGTAGGTAAAAACTTAGAAAA
GTTGGGGCTAAAAATTCCTCATCAAGAAACTCCTTTTGATGAACACATGGGTAAATCAAC
ACGACAAAGAAAAGGCTAAACCAGTACTTGTGAACAAGGTGAGTGATTACTATGAAGGGG
AAGAAGGAAATACC
■■Homology search results ■■ -
sp_hit_id Q73VU8
Definition sp|Q73VU8|SYP_MYCPA Prolyl-tRNA synthetase OS=Mycobacterium paratuberculosis
Align length 87
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916848|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_E06.
         (374 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q73VU8|SYP_MYCPA Prolyl-tRNA synthetase OS=Mycobacterium para...    31   2.2  
sp|A0QIY9|SYP_MYCA1 Prolyl-tRNA synthetase OS=Mycobacterium aviu...    31   2.2  
sp|O05814|SYP_MYCTU Prolyl-tRNA synthetase OS=Mycobacterium tube...    30   2.8  
sp|A1KMI8|SYP_MYCBP Prolyl-tRNA synthetase OS=Mycobacterium bovi...    30   2.8  
sp|Q7TXQ5|SYP_MYCBO Prolyl-tRNA synthetase OS=Mycobacterium bovi...    30   2.8  
sp|Q1BAA0|SYP_MYCSS Prolyl-tRNA synthetase OS=Mycobacterium sp. ...    30   4.9  
sp|A1UER2|SYP_MYCSK Prolyl-tRNA synthetase OS=Mycobacterium sp. ...    30   4.9  
sp|Q9PQQ9|RL4_UREPA 50S ribosomal protein L4 OS=Ureaplasma parvu...    30   4.9  
sp|B1AIM1|RL4_UREP2 50S ribosomal protein L4 OS=Ureaplasma parvu...    30   4.9  
sp|A4J555|PYRB_DESRM Aspartate carbamoyltransferase OS=Desulfoto...    30   4.9  
sp|P62286|ASPM_CANFA Abnormal spindle-like microcephaly-associat...    30   4.9  
sp|P54339|XKDT_BACSU Phage-like element PBSX protein xkdT OS=Bac...    29   6.3  
sp|P28584|TRK2_YEAST Low-affinity potassium transport protein OS...    29   6.3  
sp|P62288|ASPM_FELCA Abnormal spindle-like microcephaly-associat...    29   6.3  
sp|Q5HWE6|EX7L_CAMJR Exodeoxyribonuclease 7 large subunit OS=Cam...    29   8.3  
sp|A1VY44|EX7L_CAMJJ Exodeoxyribonuclease 7 large subunit OS=Cam...    29   8.3  
sp|Q9PIH4|EX7L_CAMJE Exodeoxyribonuclease 7 large subunit OS=Cam...    29   8.3  
sp|A7H544|EX7L_CAMJD Exodeoxyribonuclease 7 large subunit OS=Cam...    29   8.3  
sp|P62296|ASPM_SAIBB Abnormal spindle-like microcephaly-associat...    29   8.3  
sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-associat...    29   8.3  
sp|P62293|ASPM_PANTR Abnormal spindle-like microcephaly-associat...    29   8.3  
sp|P62292|ASPM_MACMU Abnormal spindle-like microcephaly-associat...    29   8.3  
sp|P62291|ASPM_MACFA Abnormal spindle-like microcephaly-associat...    29   8.3  
sp|P62290|ASPM_HYLLA Abnormal spindle-like microcephaly-associat...    29   8.3  
sp|Q8IZT6|ASPM_HUMAN Abnormal spindle-like microcephaly-associat...    29   8.3  
sp|P62289|ASPM_GORGO Abnormal spindle-like microcephaly-associat...    29   8.3  
sp|P62287|ASPM_COLGU Abnormal spindle-like microcephaly-associat...    29   8.3  
sp|P62283|ASPM_AOTVO Abnormal spindle-like microcephaly-associat...    29   8.3  

>sp|Q73VU8|SYP_MYCPA Prolyl-tRNA synthetase OS=Mycobacterium
           paratuberculosis GN=proS PE=3 SV=1
          Length = 582

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +2

Query: 83  SSAFQMEANSKDGVHQKPSRIDINSYTMHDKSLKVVLQIRPHLWGEVGKNLEKLGLKIPH 262
           + AF  +   +DG   KP R+ + SY +    +  V+  + H         ++LGL+ P 
Sbjct: 434 TDAFTADVLGEDG---KPVRLTMGSYGLGVSRMVAVIAEQHH---------DELGLRWPA 481

Query: 263 QETPFDEHM---GKSTRQRKG*TSTCE 334
              PFD H+    K  + R G T+  +
Sbjct: 482 SVAPFDVHLVIANKDAQARAGATALAD 508


>sp|A0QIY9|SYP_MYCA1 Prolyl-tRNA synthetase OS=Mycobacterium avium
           (strain 104) GN=proS PE=3 SV=1
          Length = 582

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +2

Query: 83  SSAFQMEANSKDGVHQKPSRIDINSYTMHDKSLKVVLQIRPHLWGEVGKNLEKLGLKIPH 262
           + AF  +   +DG   KP R+ + SY +    +  V+  + H         ++LGL+ P 
Sbjct: 434 TDAFTADVLGEDG---KPVRLTMGSYGLGVSRMVAVIAEQHH---------DELGLRWPA 481

Query: 263 QETPFDEHM---GKSTRQRKG*TSTCE 334
              PFD H+    K  + R G T+  +
Sbjct: 482 SVAPFDVHLVIANKDAQARAGATALAD 508


>sp|O05814|SYP_MYCTU Prolyl-tRNA synthetase OS=Mycobacterium
           tuberculosis GN=proS PE=3 SV=1
          Length = 582

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 83  SSAFQMEANSKDGVHQKPSRIDINSYTMHDKSLKVVLQIRPHLWGEVGKNLEKLGLKIPH 262
           + AF  +   +DG   KP R+ + SY +    L  V+  + H         ++LGL+ P 
Sbjct: 434 TDAFTADVLGEDG---KPVRLTMGSYGIGVSRLVAVVAEQHH---------DELGLRWPS 481

Query: 263 QETPFDEHM---GKSTRQRKG*TS 325
              PFD H+    K  + R G T+
Sbjct: 482 TVAPFDVHLVIANKDAQARAGATA 505


>sp|A1KMI8|SYP_MYCBP Prolyl-tRNA synthetase OS=Mycobacterium bovis
           (strain BCG / Pasteur 1173P2) GN=proS PE=3 SV=1
          Length = 582

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 83  SSAFQMEANSKDGVHQKPSRIDINSYTMHDKSLKVVLQIRPHLWGEVGKNLEKLGLKIPH 262
           + AF  +   +DG   KP R+ + SY +    L  V+  + H         ++LGL+ P 
Sbjct: 434 TDAFTADVLGEDG---KPVRLTMGSYGIGVSRLVAVVAEQHH---------DELGLRWPS 481

Query: 263 QETPFDEHM---GKSTRQRKG*TS 325
              PFD H+    K  + R G T+
Sbjct: 482 TVAPFDVHLVIANKDAQARAGATA 505


>sp|Q7TXQ5|SYP_MYCBO Prolyl-tRNA synthetase OS=Mycobacterium bovis
           GN=proS PE=3 SV=1
          Length = 582

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 83  SSAFQMEANSKDGVHQKPSRIDINSYTMHDKSLKVVLQIRPHLWGEVGKNLEKLGLKIPH 262
           + AF  +   +DG   KP R+ + SY +    L  V+  + H         ++LGL+ P 
Sbjct: 434 TDAFTADVLGEDG---KPVRLTMGSYGIGVSRLVAVVAEQHH---------DELGLRWPS 481

Query: 263 QETPFDEHM---GKSTRQRKG*TS 325
              PFD H+    K  + R G T+
Sbjct: 482 TVAPFDVHLVIANKDAQARAGATA 505


>sp|Q1BAA0|SYP_MYCSS Prolyl-tRNA synthetase OS=Mycobacterium sp.
           (strain MCS) GN=proS PE=3 SV=1
          Length = 584

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 83  SSAFQMEANSKDGVHQKPSRIDINSYTMHDKSLKVVLQIRPHLWGEVGKNLEKLGLKIPH 262
           + AF  +   +DG   KP R+ + SY +    L  V+  + H         ++LGL+ P 
Sbjct: 438 TEAFSADVLGEDG---KPVRLTMGSYGIGVSRLVAVIAEQQH---------DELGLRWPA 485

Query: 263 QETPFDEHM 289
              PFD H+
Sbjct: 486 AVAPFDVHV 494


>sp|A1UER2|SYP_MYCSK Prolyl-tRNA synthetase OS=Mycobacterium sp.
           (strain KMS) GN=proS PE=3 SV=1
          Length = 584

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 83  SSAFQMEANSKDGVHQKPSRIDINSYTMHDKSLKVVLQIRPHLWGEVGKNLEKLGLKIPH 262
           + AF  +   +DG   KP R+ + SY +    L  V+  + H         ++LGL+ P 
Sbjct: 438 TEAFSADVLGEDG---KPVRLTMGSYGIGVSRLVAVIAEQQH---------DELGLRWPA 485

Query: 263 QETPFDEHM 289
              PFD H+
Sbjct: 486 AVAPFDVHV 494


>sp|Q9PQQ9|RL4_UREPA 50S ribosomal protein L4 OS=Ureaplasma parvum
           GN=rplD PE=3 SV=1
          Length = 211

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 215 GEVGKNLE---KLGLKIPHQETPFDEHMGKSTRQRKG*TSTCEQGE 343
           G   K LE    L +++PH++  FD  + ++  +R+G  ST  +GE
Sbjct: 11  GNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGE 56


>sp|B1AIM1|RL4_UREP2 50S ribosomal protein L4 OS=Ureaplasma parvum
           serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rplD
           PE=3 SV=1
          Length = 211

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 215 GEVGKNLE---KLGLKIPHQETPFDEHMGKSTRQRKG*TSTCEQGE 343
           G   K LE    L +++PH++  FD  + ++  +R+G  ST  +GE
Sbjct: 11  GNFAKELEVTSDLFVEVPHKQAMFDSVLAENAAERQGTHSTLTKGE 56


>sp|A4J555|PYRB_DESRM Aspartate carbamoyltransferase
           OS=Desulfotomaculum reducens (strain MI-1) GN=pyrB PE=3
           SV=1
          Length = 312

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 28/81 (34%)
 Frame = +2

Query: 107 NSKDGVHQKPSRIDINSYTMHDKS-----LKVVLQ--------IRPHLWG---------E 220
           N+ DG H+ P++  ++ +T+ +K      LKVV+          R ++WG          
Sbjct: 128 NAGDGTHEHPTQALLDMFTIREKKGSMAGLKVVIVGDILHSRVARSNIWGLTKMGAEVRV 187

Query: 221 VG------KNLEKLGLKIPHQ 265
           VG      K++EK+G+K+ H+
Sbjct: 188 VGPITLMPKDIEKMGVKVYHR 208
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916848|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_E06.
         (374 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******