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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916850
Clone id YMU001_000092_E11
Library
Length 422
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCGTGCGTTGTTAGTCCAAAGGGTATTAAACCTCTTGTGTCCTCCCACATAGGGAATGC
CCAAGTCATAGAGCATTAAGCTCGATGTCTTTCTTTCACAAACATAGTTTGCGATAACAT
TAAAGAAAGTTCTTGTTCCGGACTATCGCCCAACGTAGGCGGACGGTTCCAATCCGAAGA
TTCCTTGTGCATGGAGGCACTTCCTTCCAATCTTTTCCTCCTGCAAGTTATTACCACCGG
CAGTGTTTTCCCGACGCCCATTAGAGTCTCTTTCTTACCAAATCATAAAAAATGATTCAC
CTTGTGAGCATCAATGACGCCTTGCAAAATCTTAGGCAGATAGGATTCTAGCCATAGAAC
GTACGTTCAAACCCGGTTCATAATTCCTTGCAAGAGAGTATAACAAACTCTCATCCAATT
CC
■■Homology search results ■■ -
sp_hit_id Q92JP8
Definition sp|Q92JP8|SCA1_RICCN Putative surface cell antigen sca1 OS=Rickettsia conorii
Align length 59
Score (bit) 32.3
E-value 0.78
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916850|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_E11.
         (422 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92JP8|SCA1_RICCN Putative surface cell antigen sca1 OS=Ricke...    32   0.78 
sp|Q54MH9|RFC1_DICDI Probable replication factor C subunit 1 OS=...    30   3.9  
sp|Q59TN9|ATG20_CANAL Autophagy-related protein 20 OS=Candida al...    30   3.9  

>sp|Q92JP8|SCA1_RICCN Putative surface cell antigen sca1 OS=Rickettsia
            conorii GN=sca1 PE=3 SV=1
          Length = 1902

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 113  DNIKESSCSGLSPNVGGRFQSEDSLCMEALPSNLFLLQVITTGSVFPTPIRVSFLPNHK 289
            +NI+     G +PN GG   S  +  M+ LP NL +      GS++ +P    F  +HK
Sbjct: 984  NNIETDVDVGFNPN-GGNSHSMPTANMDILPKNLAVTPPTNVGSLYNSPQAQQFQEDHK 1041


>sp|Q54MH9|RFC1_DICDI Probable replication factor C subunit 1
            OS=Dictyostelium discoideum GN=rfc1 PE=3 SV=1
          Length = 1401

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 22/74 (29%)
 Frame = -3

Query: 360  VLWLESYLPKILQGVI----------------------DAHKVNHFL*FGKKETLMGVGK 247
            +LW+E Y PK+++ ++                      DA K N  L  G      G+GK
Sbjct: 849  ILWVEKYRPKVIEDIVGNPGIFQEFGKWLDQWNSTAPRDASKKNAVLLSGPP----GIGK 904

Query: 246  TLPVVITCRRKRLE 205
            T   ++ C++K  E
Sbjct: 905  TSAALLICKQKGFE 918


>sp|Q59TN9|ATG20_CANAL Autophagy-related protein 20 OS=Candida
           albicans GN=ATG20 PE=3 SV=1
          Length = 407

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
 Frame = +2

Query: 2   SCVVSPKGIKPLVSSHIGNAQVIEH*ARCLSFTNIVCDNIK-----ESSCSGLSPNVGGR 166
           S + SPK    + S+H+   ++IEH  R L+     C  IK     E     L PN    
Sbjct: 281 SIITSPKTYSYINSTHLTKGKLIEHRKRLLTNFLNNCLEIKQIRSLEFFAKFLDPN--AN 338

Query: 167 FQSEDSLCMEALPSNLFL------LQVITTGSVFPTPIR---VSFLPNHKK*FT 301
           +  E +L    LP +++L      L+     S  P P     +SF  ++KK  T
Sbjct: 339 WGDEIALIQSQLPKSIYLSNPENGLKTDPIYSNLPNPSNKNTISFFKDNKKKLT 392
tr_hit_id B0BVT4
Definition tr|B0BVT4|B0BVT4_RICRO Putative uncharacterized protein OS=Rickettsia rickettsii (strain Iowa)
Align length 59
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916850|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_E11.
         (422 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0BVT4|B0BVT4_RICRO Putative uncharacterized protein OS=Ricke...    37   0.49 
tr|A8GQE7|A8GQE7_RICRS Cell surface antigen OS=Rickettsia ricket...    37   0.49 
tr|Q3L7Q6|Q3L7Q6_9RICK Surface antigen (Fragment) OS=Rickettsia ...    36   0.83 
tr|Q7PAC7|Q7PAC7_RICSI Cell surface antigen OS=Rickettsia sibiri...    35   1.8  
tr|Q3L7Q7|Q3L7Q7_9RICK Surface antigen (Fragment) OS=Israeli tic...    35   1.8  
tr|Q9M2G4|Q9M2G4_ARATH Putative uncharacterized protein F14P22.1...    33   5.4  
tr|Q940L8|Q940L8_ARATH AT3g58520/F14P22_110 OS=Arabidopsis thali...    33   5.4  
tr|Q8LFY2|Q8LFY2_ARATH Putative uncharacterized protein OS=Arabi...    33   5.4  
tr|B4PFE9|B4PFE9_DROYA GE21262 OS=Drosophila yakuba GN=GE21262 P...    33   7.0  
tr|B3NFP9|B3NFP9_DROER GG15039 OS=Drosophila erecta GN=GG15039 P...    33   7.0  

>tr|B0BVT4|B0BVT4_RICRO Putative uncharacterized protein OS=Rickettsia
            rickettsii (strain Iowa) GN=RrIowa_0029 PE=4 SV=1
          Length = 1866

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = +2

Query: 113  DNIKESSCSGLSPNVGGRFQSEDSLCMEALPSNLFLLQVITTGSVFPTPIRVSFLPNHK 289
            DNI+     G +PN GG   S  +  M++LP NL +   I  GS++ +P    F  +HK
Sbjct: 988  DNIETDVDIGFNPN-GGNSHSMPTANMDSLPKNLAVTPPINVGSLYNSPQAQQFREDHK 1045


>tr|A8GQE7|A8GQE7_RICRS Cell surface antigen OS=Rickettsia rickettsii
            (strain Sheila Smith) GN=A1G_00130 PE=4 SV=1
          Length = 1866

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = +2

Query: 113  DNIKESSCSGLSPNVGGRFQSEDSLCMEALPSNLFLLQVITTGSVFPTPIRVSFLPNHK 289
            DNI+     G +PN GG   S  +  M++LP NL +   I  GS++ +P    F  +HK
Sbjct: 988  DNIETDVDIGFNPN-GGNSHSMPTANMDSLPKNLAVTPPINVGSLYNSPQAQQFREDHK 1045


>tr|Q3L7Q6|Q3L7Q6_9RICK Surface antigen (Fragment) OS=Rickettsia
            heilongjiangensis GN=sca1 PE=4 SV=1
          Length = 1588

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +2

Query: 113  DNIKESSCSGLSPNVGGRFQSEDSLCMEALPSNLFLLQVITTGSVFPTPIRVSFLPNHK 289
            +NI+  +  G +PN GG   S     M++LP NL +   I  GS++ +P    F  +HK
Sbjct: 901  NNIETDADVGFNPN-GGNSHSMPPANMDSLPKNLAVTPTINVGSLYNSPQAQQFREDHK 958


>tr|Q7PAC7|Q7PAC7_RICSI Cell surface antigen OS=Rickettsia sibirica
            246 GN=rsib_orf.698 PE=4 SV=1
          Length = 1851

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +2

Query: 113  DNIKESSCSGLSPNVGGRFQSEDSLCMEALPSNLFLLQVITTGSVFPTPIRVSFLPNHK 289
            +NI+     G +PN GG   S  +  M++LP NL +   I  GS++ +P    F  +HK
Sbjct: 981  NNIETDVDVGFNPN-GGNSHSMPTANMDSLPKNLAVTPPINVGSLYNSPQAQQFREDHK 1038


>tr|Q3L7Q7|Q3L7Q7_9RICK Surface antigen (Fragment) OS=Israeli tick
            typhus rickettsia GN=sca1 PE=4 SV=1
          Length = 1859

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +2

Query: 113  DNIKESSCSGLSPNVGGRFQSEDSLCMEALPSNLFLLQVITTGSVFPTPIRVSFLPNHK 289
            +NI+     G +PN GG   S  +  M++LP NL +   I  GS++ +P    F  +HK
Sbjct: 980  NNIETDVDVGFNPN-GGNSHSMPTANMDSLPKNLAVTPPINVGSLYNSPQAQQFREDHK 1037


>tr|Q9M2G4|Q9M2G4_ARATH Putative uncharacterized protein F14P22.110
           OS=Arabidopsis thaliana GN=F14P22.110 PE=4 SV=1
          Length = 394

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +1

Query: 163 TVPIRRFLVHGGTSFQSFPPASYYHRQCFPDAH*SLFLTKS*KMIHLVSINDALQNLRQI 342
           TVP+ RFL    T F  FP A Y    CF     +L L    ++IH     D ++ L ++
Sbjct: 60  TVPVLRFLRRYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRV 119


>tr|Q940L8|Q940L8_ARATH AT3g58520/F14P22_110 OS=Arabidopsis thaliana
           GN=At3g58520 PE=2 SV=1
          Length = 418

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +1

Query: 163 TVPIRRFLVHGGTSFQSFPPASYYHRQCFPDAH*SLFLTKS*KMIHLVSINDALQNLRQI 342
           TVP+ RFL    T F  FP A Y    CF     +L L    ++IH     D ++ L ++
Sbjct: 84  TVPVLRFLRRYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRV 143


>tr|Q8LFY2|Q8LFY2_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 391

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +1

Query: 163 TVPIRRFLVHGGTSFQSFPPASYYHRQCFPDAH*SLFLTKS*KMIHLVSINDALQNLRQI 342
           TVP+ RFL    T F  FP A Y    CF     +L L    ++IH     D ++ L ++
Sbjct: 57  TVPVLRFLRRYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRV 116


>tr|B4PFE9|B4PFE9_DROYA GE21262 OS=Drosophila yakuba GN=GE21262 PE=4
           SV=1
          Length = 450

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 189 AWRHFLPIFSSCKLLPPAVFSRRPLESLSYQIIKNDSPCEH 311
           AW HF   FSS +L+   V++   +E L +++++++ P  H
Sbjct: 256 AWSHFSSHFSSIELVLTLVYAYEAIELLQHRVLRSNMPVTH 296


>tr|B3NFP9|B3NFP9_DROER GG15039 OS=Drosophila erecta GN=GG15039 PE=4
           SV=1
          Length = 450

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 189 AWRHFLPIFSSCKLLPPAVFSRRPLESLSYQIIKNDSPCEH 311
           AW HF   FSS +L+   V++   +E L +++++++ P  H
Sbjct: 256 AWSHFSDHFSSIELVLTLVYAYEAIELLQHRVLRSNMPVTH 296