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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916857
Clone id YMU001_000092_F10
Library
Length 277
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATGTGTCTCACAAGGAATGAGACGAAATACAAAGCATTAAAAGTCAATTAAAATTAAAC
CCAAAATAAACCTCAAAATTTCGTCCCTCATCAGCCCTCCCAAGGCCAAAAGAAAGTAGA
TACAAAAGCCTGGATGCACAACTCAAAACACCTGTTTCAGACGATCATTCGTGCTCGACT
TTTAAAGAGTGATAAATCTCTGCCCTCACCAAATCCACAGCTCCATGATCATGTGTGTAT
CGATCAGGCCCAAAATAAAGACCTGTCTTTTCTATAA
■■Homology search results ■■ -
sp_hit_id Q22811
Definition sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis elegans
Align length 33
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916857|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_F10.
         (277 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis e...    29   6.4  
sp|P14647|RDRP_BPQBE RNA-directed RNA polymerase beta chain OS=E...    29   8.3  
sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea...    29   8.3  

>sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis
           elegans GN=ceh-21 PE=2 SV=3
          Length = 495

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 106 PKESRYKSLDAQLKTPVSDDHSCSTFKE**ISA 204
           P E  Y  LDAQL++ V +DH+  +  E  +SA
Sbjct: 68  PPERNYAELDAQLESVVLEDHTAESTMEPGVSA 100


>sp|P14647|RDRP_BPQBE RNA-directed RNA polymerase beta chain
           OS=Enterobacteria phage Qbeta PE=2 SV=1
          Length = 589

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 193 ITL*KSSTNDRLKQVF*VVHPGFCIYFLLALGGLMRDEI 77
           +T+ K+S  DR       + PG+ ++F L +GG++RD +
Sbjct: 210 VTVPKNSKTDRCI----AIEPGWNMFFQLGIGGILRDRL 244


>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea
           mays GN=MET2A PE=1 SV=1
          Length = 912

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 13  KE*DEIQSIKSQLKLNPK*TSKFRPSSALPRPKESRYKSLDAQLKTPVSDD 165
           +E +E+ +  S  +     +S  +P S   + K  R K  DA++K PV DD
Sbjct: 31  EEEEEVAAASSAKRSRKAASSGKKPKSPPKQAKPGRKKKGDAEMKEPVEDD 81
tr_hit_id Q7XI89
Definition tr|Q7XI89|Q7XI89_ORYSJ Os07g0581300 protein OS=Oryza sativa subsp. japonica
Align length 32
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916857|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_F10.
         (277 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XI89|Q7XI89_ORYSJ Os07g0581300 protein OS=Oryza sativa subs...    47   4e-04
tr|B8B7S7|B8B7S7_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|A3BLJ5|A3BLJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|Q9MAJ5|Q9MAJ5_ARATH F27F5.22 OS=Arabidopsis thaliana PE=4 SV=1      43   0.009
tr|Q7Y231|Q7Y231_ARATH At1g45150 (Putative uncharacterized prote...    43   0.009
tr|A7NTF2|A7NTF2_VITVI Chromosome chr18 scaffold_1, whole genome...    42   0.012
tr|A9T5B5|A9T5B5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.016
tr|B4BV11|B4BV11_9CHRO Small GTP-binding protein OS=Cyanothece s...    33   5.5  
tr|Q25BL9|Q25BL9_BRAOL Heat shock factor, putative OS=Brassica o...    33   9.4  

>tr|Q7XI89|Q7XI89_ORYSJ Os07g0581300 protein OS=Oryza sativa subsp.
           japonica GN=P0453G03.31 PE=2 SV=1
          Length = 658

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 17/32 (53%), Positives = 25/32 (78%)
 Frame = -3

Query: 275 IEKTGLYFGPDRYTHDHGAVDLVRAEIYHSLK 180
           +EKTG+Y GPDRY  DHG +D++R E+Y + +
Sbjct: 626 LEKTGVYLGPDRYALDHGPIDVMRGEVYRTCR 657


>tr|B8B7S7|B8B7S7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_26624 PE=4 SV=1
          Length = 709

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = -3

Query: 275 IEKTGLYFGPDRYTHDHGAVDLVRAEIYH 189
           +EKTG+Y GPDRY  DHG +D++R E+Y+
Sbjct: 626 LEKTGVYLGPDRYALDHGPIDVMRGEVYY 654


>tr|A3BLJ5|A3BLJ5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_023917 PE=4 SV=1
          Length = 957

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = -3

Query: 275 IEKTGLYFGPDRYTHDHGAVDLVRAEIYH 189
           +EKTG+Y GPDRY  DHG +D++R E+Y+
Sbjct: 874 LEKTGVYLGPDRYALDHGPIDVMRGEVYY 902


>tr|Q9MAJ5|Q9MAJ5_ARATH F27F5.22 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 687

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 15/32 (46%), Positives = 26/32 (81%)
 Frame = -3

Query: 275 IEKTGLYFGPDRYTHDHGAVDLVRAEIYHSLK 180
           +EKTG+Y GP+RYT +H  +D++R E+Y++ +
Sbjct: 654 LEKTGVYTGPERYTLEHRPIDVLRGEVYNTCR 685


>tr|Q7Y231|Q7Y231_ARATH At1g45150 (Putative uncharacterized protein
           At1g45150) OS=Arabidopsis thaliana GN=At1g45150 PE=2
           SV=1
          Length = 643

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 15/32 (46%), Positives = 26/32 (81%)
 Frame = -3

Query: 275 IEKTGLYFGPDRYTHDHGAVDLVRAEIYHSLK 180
           +EKTG+Y GP+RYT +H  +D++R E+Y++ +
Sbjct: 610 LEKTGVYTGPERYTLEHRPIDVLRGEVYNTCR 641


>tr|A7NTF2|A7NTF2_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014643001
           PE=4 SV=1
          Length = 638

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 14/32 (43%), Positives = 27/32 (84%)
 Frame = -3

Query: 275 IEKTGLYFGPDRYTHDHGAVDLVRAEIYHSLK 180
           +E+TG+Y GP+RYT +H ++D++R EI+++ +
Sbjct: 606 LERTGVYMGPERYTLEHMSIDMMRGEIFNAFR 637


>tr|A9T5B5|A9T5B5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_140448 PE=4 SV=1
          Length = 651

 Score = 42.0 bits (97), Expect = 0.016
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = -3

Query: 275 IEKTGLYFGPDRYTHDHGAVDLVRAEIYHSLK 180
           +E+TG Y GP+RYT +H  ++ +R EIYH+ +
Sbjct: 617 LERTGTYTGPERYTLEHNPIESLRGEIYHAYR 648


>tr|B4BV11|B4BV11_9CHRO Small GTP-binding protein OS=Cyanothece sp.
           PCC 8802 GN=Cyan8802DRAFT_0628 PE=4 SV=1
          Length = 616

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 62  QNKPQNFVPHQPSQGQKKVDTKA-WMHNSKHLFQTIIRARLLKSDKSLPSPNPQLHDHVC 238
           QNK  N    +  +  K +  K     N+K  F +IIR+      KSLP   P++ +++ 
Sbjct: 395 QNKEGNKALIKADREDKTIFIKVKGNENTKRSFLSIIRSEFEVIHKSLPGLEPEIKEYIA 454

Query: 239 IDQAQNKDLSF 271
           + Q + K +S+
Sbjct: 455 LPQDETKPISY 465


>tr|Q25BL9|Q25BL9_BRAOL Heat shock factor, putative OS=Brassica
           oleracea GN=23.t00064 PE=3 SV=1
          Length = 432

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
 Frame = +2

Query: 65  NKPQNFVPHQPSQGQKKVDTKAW-------MHNSKHLFQTIIRARLLKSDKSLPSPNPQL 223
           N   +FV    + G +KVD   W       +   KHL +TI R +  +   S  S NPQ 
Sbjct: 84  NNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKSTQGHGSSSSSNPQS 143

Query: 224 H 226
           H
Sbjct: 144 H 144