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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916860
Clone id YMU001_000092_G01
Library
Length 408
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAAACAACAAGATTGCTACACATGAGAGAAAGGTCTTTATACGGAGCTTCTATACATGT
GAACAAGATCCAAAGTAGCAAATGAAACAATATGTTGCTATTGTTTCCCATCAATTTCAT
CTCCCAGTGTAATTTTTTGACAATTGTAAGGCATATTGTGCAAAAATGTTGTTCAAAGCT
TTTACAAGATGCTTTGTGATTGTAAATACAATGCTCCTACTCCAAGTAGAGGTGAGAGTG
GGATGCAATAACAAAGCGGCTAAGAGCCTTGGCAATCTTACCTGCCAAAGATCTTGTTCT
CAAAGAGGCATCACCTTGGGCTACAGCCATAGCCTTGAGAAAAGCGCCTTGCTCGAACGC
TATCTTGGCCACAGGAGCACCAACTGGTGCAAACTTCAATAACAACCA
■■Homology search results ■■ -
sp_hit_id A6U860
Definition sp|A6U860|RL4_SINMW 50S ribosomal protein L4 OS=Sinorhizobium medicae (strain WSM419)
Align length 51
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916860|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_G01.
         (408 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6U860|RL4_SINMW 50S ribosomal protein L4 OS=Sinorhizobium me...    30   3.7  
sp|Q92QG9|RL4_RHIME 50S ribosomal protein L4 OS=Rhizobium melilo...    30   4.8  
sp|A0QSQ1|GLMM_MYCS2 Phosphoglucosamine mutase OS=Mycobacterium ...    30   4.8  
sp|Q927J4|Y2794_LISIN UPF0309 protein lin2794 OS=Listeria innocu...    30   5.0  
sp|Q71WD4|Y2617_LISMF UPF0309 protein LMOf2365_2617 OS=Listeria ...    30   5.0  
sp|P57290|AKH_BUCAI Bifunctional aspartokinase/homoserine dehydr...    29   6.5  
sp|Q07108|CD69_HUMAN Early activation antigen CD69 OS=Homo sapie...    29   8.5  

>sp|A6U860|RL4_SINMW 50S ribosomal protein L4 OS=Sinorhizobium
           medicae (strain WSM419) GN=rplD PE=3 SV=1
          Length = 206

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 245 AITKRLRALAILPAKDLVLKEASPWATAIALRKAPCSNAILATGAPTGANF 397
           A++ +L+A  I+   DLV  EA   A A A      +NA++  GA    NF
Sbjct: 112 ALSAKLKAEEIIIVDDLVANEAKTKALAGAFASLGLTNALIIGGAEIEGNF 162


>sp|Q92QG9|RL4_RHIME 50S ribosomal protein L4 OS=Rhizobium meliloti
           GN=rplD PE=3 SV=1
          Length = 206

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 245 AITKRLRALAILPAKDLVLKEASPWATAIALRKAPCSNAILATGAPTGANF 397
           A++ +L+A  I+   DLV  EA   A A A      +NA++  GA    NF
Sbjct: 112 ALSAKLKAEDIIVIDDLVANEAKTKALAGAFASLGLTNALIIGGAEIEGNF 162


>sp|A0QSQ1|GLMM_MYCS2 Phosphoglucosamine mutase OS=Mycobacterium
           smegmatis GN=glmM PE=3 SV=1
          Length = 453

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 245 AITKRLRALAILPAKDLVLKEASPWATAIALRKAPCSNAILATGAPTGANFNNN 406
           A+T RL  L ++    +     + WA A    +A  +N I     PTG N N+N
Sbjct: 174 AVTTRLDGLTVV----VDCAHGAAWAAAPRAYRAAGANVIAINAEPTGLNINDN 223


>sp|Q927J4|Y2794_LISIN UPF0309 protein lin2794 OS=Listeria innocua
           GN=lin2794 PE=3 SV=1
          Length = 247

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 387 PVGAPVAKIAFEQGAFLKAMAVAQGDASLRTRSLAGK 277
           PV   VA+IA E+GAF+  +   Q  AS ++R  +GK
Sbjct: 118 PVPIDVAEIAREKGAFVIVITSLQYSASQKSRHTSGK 154


>sp|Q71WD4|Y2617_LISMF UPF0309 protein LMOf2365_2617 OS=Listeria
           monocytogenes serotype 4b (strain F2365)
           GN=LMOf2365_2617 PE=3 SV=1
          Length = 247

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -1

Query: 387 PVGAPVAKIAFEQGAFLKAMAVAQGDASLRTRSLAGK 277
           PV   VA+IA E+GAF+  +   Q  AS ++R  +GK
Sbjct: 118 PVPIDVAEIAREKGAFVIVITSLQYSASQKSRHTSGK 154


>sp|P57290|AKH_BUCAI Bifunctional aspartokinase/homoserine
           dehydrogenase OS=Buchnera aphidicola subsp.
           Acyrthosiphon pisum GN=thrA PE=3 SV=1
          Length = 816

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 247 NNKAAKSLGNLTCQRSCSQRGITLGYSH 330
           N    KS+G L C+++CS++    G +H
Sbjct: 285 NTNNVKSIGTLICEQNCSEKDFLKGVTH 312


>sp|Q07108|CD69_HUMAN Early activation antigen CD69 OS=Homo sapiens
           GN=CD69 PE=1 SV=1
          Length = 199

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 280 TCQRSCSQRGITLGYSHSLEKSALLERYLGHRSTNWCKLQ*QP 408
           + Q +CS+ G TL    S +    L+RY G R  +W  L+ +P
Sbjct: 108 SAQNACSEHGATLAVIDSEKDMNFLKRYAG-REEHWVGLKKEP 149
tr_hit_id O97234
Definition tr|O97234|O97234_PLAF7 Putative uncharacterized protein MAL3P2.13 OS=Plasmodium falciparum (isolate 3D7)
Align length 47
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916860|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_G01.
         (408 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O97234|O97234_PLAF7 Putative uncharacterized protein MAL3P2.1...    36   0.84 
tr|B8DMM0|B8DMM0_DESVM Putative uncharacterized protein OS=Desul...    34   4.2  
tr|A5L0T9|A5L0T9_9GAMM Putative uncharacterized protein OS=Vibri...    33   7.1  

>tr|O97234|O97234_PLAF7 Putative uncharacterized protein MAL3P2.13
           OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P2.13 PE=4
           SV=2
          Length = 1446

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 195 KASCK-SFEQHFCTICLTIVKKLHWEMKLMGNNSNILFHLLLWILFT 58
           K  CK   E+ FC+ C  I+  LH+E  ++ N   +LF  L +  FT
Sbjct: 196 KKKCKYDKEKTFCSFCTYIISLLHYENNIIKNKDKLLFLFLFFFYFT 242


>tr|B8DMM0|B8DMM0_DESVM Putative uncharacterized protein
           OS=Desulfovibrio vulgaris (strain Miyazaki) GN=DvMF_2033
           PE=3 SV=1
          Length = 300

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/52 (44%), Positives = 28/52 (53%)
 Frame = -1

Query: 402 LLKFAPVGAPVAKIAFEQGAFLKAMAVAQGDASLRTRSLAGKIAKALSRFVI 247
           LL FAP  A   K A +  AFLKAM   +  A+   R   GK  ++ SRFVI
Sbjct: 133 LLTFAPREADPEKWAADTQAFLKAMPGVERVAASPLRDELGKAWRSASRFVI 184


>tr|A5L0T9|A5L0T9_9GAMM Putative uncharacterized protein
           OS=Vibrionales bacterium SWAT-3 GN=VSWAT3_12032 PE=4
           SV=1
          Length = 603

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 228 YLE*EHCIYNHKASC-KSFEQHFCTICLTIVKKLHWEMKLM 109
           YL+   C   HKA C  +F+QH  ++   I K  HW  KL+
Sbjct: 121 YLQELECAEEHKALCDNAFQQHSKSLMQPISKLTHWNQKLL 161