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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916864
Clone id YMU001_000092_G11
Library
Length 404
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000092_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATAATCCATTTGATACATAAACTTTGCCATCTCCATTCAAAATCTTGAGAAACAGGTAAT
GATAAAATCTGCAAACCATTGACGGGAGCTCAACTCCTACAACACTGCAGAGACCCTGGA
ATCATACAAGTTAACAAGACTATTAGCAGTAGAGATGTCCTTTAAGTTGGATAAAGCTAG
TAAATTTGTACAAGGCTCTAAAACCCCGACTCCCTCTGATCACAATAATATGTGTAACCT
AGCCTGTGACAATCTGTCAGCGTCCAGCAGGCTTCCACAACGATAAGCCATGCGCCACTT
TGCCTTTCCAGCATAGCAGCATCCAGGACCCATCTTCGTCCACACTAAAATTCTTGCTGT
AACCGCACCTGACAATAGTTTGAGACTCATTTAGAGCCTTTCGA
■■Homology search results ■■ -
sp_hit_id Q9LTI5
Definition sp|Q9LTI5|SCL11_ARATH Scarecrow-like protein 11 OS=Arabidopsis thaliana
Align length 46
Score (bit) 51.2
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916864|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_G11.
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LTI5|SCL11_ARATH Scarecrow-like protein 11 OS=Arabidopsis t...    51   2e-06
sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14 OS=Arabidopsis t...    49   1e-05
sp|Q9SNB8|SCL30_ARATH Scarecrow-like protein 30 OS=Arabidopsis t...    47   3e-05
sp|O80933|SCL9_ARATH Scarecrow-like protein 9 OS=Arabidopsis tha...    43   6e-04
sp|P0C883|SCL33_ARATH Scarecrow-like protein 33 OS=Arabidopsis t...    43   6e-04
sp|Q3EDH0|SCL31_ARATH Scarecrow-like protein 31 OS=Arabidopsis t...    41   0.002
sp|P0C884|SCL34_ARATH Scarecrow-like protein 34 OS=Arabidopsis t...    39   0.006
sp|Q9CM98|PROA_PASMU Gamma-glutamyl phosphate reductase OS=Paste...    30   2.8  
sp|Q1L8H0|LR14L_DANRE Leucine-rich repeat-containing protein 14-...    30   2.8  
sp|P50237|ST1C1_RAT Sulfotransferase 1C1 OS=Rattus norvegicus GN...    29   8.2  
sp|Q80VR3|ST1C1_MOUSE Sulfotransferase 1C1 OS=Mus musculus GN=Su...    29   8.2  

>sp|Q9LTI5|SCL11_ARATH Scarecrow-like protein 11 OS=Arabidopsis
           thaliana GN=SCL11 PE=2 SV=1
          Length = 610

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 20/46 (43%), Positives = 31/46 (67%)
 Frame = -2

Query: 403 RKALNESQTIVRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPA 266
           ++ + E++ IVR  Y ++F +D D +WML  WKG+V +  S WKPA
Sbjct: 555 KQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWKPA 600


>sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14 OS=Arabidopsis
           thaliana GN=SCL14 PE=2 SV=2
          Length = 769

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 17/33 (51%), Positives = 25/33 (75%)
 Frame = -2

Query: 364 GYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPA 266
           GY KNF VD++G+W+L  WKG++ +  SLW P+
Sbjct: 735 GYDKNFDVDQNGNWLLQGWKGRIVYASSLWVPS 767


>sp|Q9SNB8|SCL30_ARATH Scarecrow-like protein 30 OS=Arabidopsis
           thaliana GN=SCL30 PE=2 SV=1
          Length = 583

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = -2

Query: 403 RKALNESQTIVRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPA 266
           ++ + + + IV+  Y K+F +D D  WM   WKG+V + +S WKPA
Sbjct: 536 KQIVKDGKEIVKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWKPA 581


>sp|O80933|SCL9_ARATH Scarecrow-like protein 9 OS=Arabidopsis
           thaliana GN=SCL9 PE=2 SV=1
          Length = 718

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -2

Query: 361 YSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPAGR 260
           Y K+F +D+D  W+L  WKG+    LS+WKP  +
Sbjct: 684 YHKDFVIDQDNRWLLQGWKGRTVMALSVWKPESK 717


>sp|P0C883|SCL33_ARATH Scarecrow-like protein 33 OS=Arabidopsis
           thaliana GN=SCL33 PE=3 SV=1
          Length = 694

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = -2

Query: 403 RKALNESQTIVRCGYS-KNFSVDEDGSWMLLCWKGKVAHGLSLWKP 269
           ++ + + + +V  GY  K F VD+D  W+L  WKG++ +G S+W P
Sbjct: 648 KELVQKLKLMVESGYKPKEFDVDQDCHWLLQGWKGRIVYGSSIWVP 693


>sp|Q3EDH0|SCL31_ARATH Scarecrow-like protein 31 OS=Arabidopsis
           thaliana GN=SCL31 PE=2 SV=1
          Length = 695

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 364 GYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPA 266
           GY K+F +DED +W L  WKG++    S W P+
Sbjct: 663 GYHKDFVLDEDSNWFLQGWKGRILFSSSCWVPS 695


>sp|P0C884|SCL34_ARATH Scarecrow-like protein 34 OS=Arabidopsis
           thaliana GN=SCL34 PE=3 SV=1
          Length = 630

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 361 YSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPA 266
           Y K+F VDE+  W+L  WKG+  +  S W PA
Sbjct: 599 YHKDFVVDENSKWLLQGWKGRTLYASSCWVPA 630


>sp|Q9CM98|PROA_PASMU Gamma-glutamyl phosphate reductase
           OS=Pasteurella multocida GN=proA PE=3 SV=1
          Length = 420

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 143 LAVEMSFKLDKASKFVQGSKTPTPSDHNNMCNLACDNLSASSRLP---QR*AMRHFAFPA 313
           L +E S  LDKA   ++ +KT  PS  N +  L      A+  LP   Q  + +H  F A
Sbjct: 230 LFIEQSADLDKALPLIENAKTQRPSTCNTLETLLVQRAIATQFLPKLAQHLSAKHVKFHA 289


>sp|Q1L8H0|LR14L_DANRE Leucine-rich repeat-containing protein
           14-like OS=Danio rerio GN=si:dkey-231l1.3 PE=3 SV=1
          Length = 526

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -3

Query: 327 PGCCYAGKAKWRMAYRCGSLLDADRLSQARLHI--LL*SEGVGVLEPCTNLLALSNLKDI 154
           P  CY     + +  R     D+D+  QAR  +  +L  EG G +E CT LL + +    
Sbjct: 429 PRDCYPESVTYPLDDRTLVNYDSDKFQQARTELVGILEREGKGHVEVCTPLLGVYDADIN 488

Query: 153 STANSL 136
            T+N L
Sbjct: 489 ETSNEL 494


>sp|P50237|ST1C1_RAT Sulfotransferase 1C1 OS=Rattus norvegicus
           GN=Sult1c1 PE=1 SV=1
          Length = 304

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 296 GAWLIVVEACWTLTDCHRLGYTYYCDQRE 210
           G+W   V+  W + D HR+ Y +Y D +E
Sbjct: 179 GSWYDHVKGWWDVKDQHRILYLFYEDMKE 207
tr_hit_id A3E2G2
Definition tr|A3E2G2|A3E2G2_PINRA SCARECROW-like protein 1 OS=Pinus radiata
Align length 46
Score (bit) 58.2
E-value 2.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916864|Adiantum capillus-veneris mRNA, clone:
YMU001_000092_G11.
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3E2G2|A3E2G2_PINRA SCARECROW-like protein 1 OS=Pinus radiata...    58   2e-07
tr|A7NYX8|A7NYX8_VITVI Chromosome chr6 scaffold_3, whole genome ...    57   6e-07
tr|Q1PCS0|Q1PCS0_TOBAC GRAS1 OS=Nicotiana tabacum PE=2 SV=1            53   7e-06
tr|Q00LP5|Q00LP5_SOLLC GRAS4 OS=Solanum lycopersicum GN=GRAS4 PE...    53   9e-06
tr|A7PIT1|A7PIT1_VITVI Chromosome chr13 scaffold_17, whole genom...    52   1e-05
tr|Q2XUT7|Q2XUT7_CAPAN GRAS transcription factor (Fragment) OS=C...    51   3e-05
tr|Q84TZ7|Q84TZ7_ORYSJ Putative uncharacterized protein OSJNBa00...    50   4e-05
tr|Q7X9T5|Q7X9T5_LILLO SCARECROW-like protein OS=Lilium longiflo...    50   4e-05
tr|B8AM74|B8AM74_ORYSI Putative uncharacterized protein OS=Oryza...    50   4e-05
tr|A7PNN8|A7PNN8_VITVI Chromosome chr8 scaffold_23, whole genome...    50   4e-05
tr|A7NYX9|A7NYX9_VITVI Chromosome chr6 scaffold_3, whole genome ...    50   4e-05
tr|A5BUL3|A5BUL3_VITVI Putative uncharacterized protein OS=Vitis...    50   4e-05
tr|A3AK55|A3AK55_ORYSJ Putative uncharacterized protein OS=Oryza...    50   4e-05
tr|A7PIT4|A7PIT4_VITVI Chromosome chr13 scaffold_17, whole genom...    49   2e-04
tr|A7NYY0|A7NYY0_VITVI Chromosome chr6 scaffold_3, whole genome ...    49   2e-04
tr|A5BV87|A5BV87_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|Q5N9X3|Q5N9X3_ORYSJ SCARECROW-like protein (Putative uncharac...    47   4e-04
tr|B8AC15|B8AC15_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|A7NYY1|A7NYY1_VITVI Chromosome chr6 scaffold_3, whole genome ...    47   4e-04
tr|Q3EAP0|Q3EAP0_ARATH Uncharacterized protein At3g46600.2 OS=Ar...    47   5e-04
tr|A8MS63|A8MS63_ARATH Uncharacterized protein At3g46600.3 OS=Ar...    47   5e-04
tr|B7ZYK9|B7ZYK9_MAIZE Putative uncharacterized protein OS=Zea m...    46   8e-04
tr|B6U6Z6|B6U6Z6_MAIZE SCARECROW-like protein OS=Zea mays PE=2 SV=1    46   8e-04
tr|A7PIT0|A7PIT0_VITVI Chromosome chr13 scaffold_17, whole genom...    46   0.001
tr|A5BUL4|A5BUL4_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|Q94HJ3|Q94HJ3_ORYSA Putative SCARECROW gene regulator OS=Oryz...    45   0.002
tr|Q65XW3|Q65XW3_ORYSJ Putative scarecrow gene regulator (Putati...    45   0.002
tr|A7PIS9|A7PIS9_VITVI Chromosome chr13 scaffold_17, whole genom...    45   0.002
tr|A5BUL5|A5BUL5_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q7XLZ1|Q7XLZ1_ORYSJ Os04g0590400 protein OS=Oryza sativa subs...    45   0.002

>tr|A3E2G2|A3E2G2_PINRA SCARECROW-like protein 1 OS=Pinus radiata
           GN=SCL1 PE=2 SV=1
          Length = 810

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 24/46 (52%), Positives = 33/46 (71%)
 Frame = -2

Query: 403 RKALNESQTIVRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPA 266
           R  L++S+  V+  Y K+F VDEDG+WMLL WKG+  H LS W+P+
Sbjct: 764 RSILSKSRDKVKTFYHKDFGVDEDGNWMLLGWKGRTIHALSTWRPS 809


>tr|A7NYX8|A7NYX8_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024293001
           PE=4 SV=1
          Length = 442

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 23/45 (51%), Positives = 31/45 (68%)
 Frame = -2

Query: 403 RKALNESQTIVRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKP 269
           ++ L+  +T V+ G+ KNF V+EDG WML  WKG+  H LS WKP
Sbjct: 397 QEILSRVRTTVKQGFHKNFMVEEDGGWMLQGWKGRTIHALSCWKP 441


>tr|Q1PCS0|Q1PCS0_TOBAC GRAS1 OS=Nicotiana tabacum PE=2 SV=1
          Length = 644

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 23/36 (63%), Positives = 26/36 (72%)
 Frame = -2

Query: 373 VRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPA 266
           VR  Y K+FSVDED  WML  WKG+V + LS WKPA
Sbjct: 606 VRREYHKDFSVDEDSQWMLQGWKGRVVYALSCWKPA 641


>tr|Q00LP5|Q00LP5_SOLLC GRAS4 OS=Solanum lycopersicum GN=GRAS4 PE=2
           SV=1
          Length = 666

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 22/35 (62%), Positives = 26/35 (74%)
 Frame = -2

Query: 373 VRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKP 269
           VR  Y ++FSVDEDG WML  WKG+V + LS WKP
Sbjct: 624 VRSEYHRDFSVDEDGHWMLQGWKGRVIYALSCWKP 658


>tr|A7PIT1|A7PIT1_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018463001
           PE=4 SV=1
          Length = 716

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 20/46 (43%), Positives = 31/46 (67%)
 Frame = -2

Query: 403 RKALNESQTIVRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPA 266
           R+ + E++  V+    K+F +DEDG W+ L WKG++ H +S WKPA
Sbjct: 670 REVVEEAKEWVKSCLHKDFIIDEDGQWLRLGWKGRITHAMSSWKPA 715


>tr|Q2XUT7|Q2XUT7_CAPAN GRAS transcription factor (Fragment)
           OS=Capsicum annuum PE=2 SV=1
          Length = 325

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 22/35 (62%), Positives = 25/35 (71%)
 Frame = -2

Query: 373 VRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKP 269
           VR  Y K+FSV EDG WML  WKG+V + LS WKP
Sbjct: 285 VRSEYHKDFSVHEDGRWMLQGWKGRVFYALSCWKP 319


>tr|Q84TZ7|Q84TZ7_ORYSJ Putative uncharacterized protein
           OSJNBa0087M10.10 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0087M10.10 PE=4 SV=1
          Length = 663

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 19/42 (45%), Positives = 30/42 (71%)
 Frame = -2

Query: 394 LNESQTIVRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKP 269
           + E+Q +VR GY K+F VDE+  W++L WKG++ +  S W+P
Sbjct: 396 VRETQDMVRKGYHKDFLVDEEDQWLVLGWKGRILYASSTWQP 437


>tr|Q7X9T5|Q7X9T5_LILLO SCARECROW-like protein OS=Lilium longiflorum
           GN=LlSCL PE=2 SV=1
          Length = 748

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 22/48 (45%), Positives = 31/48 (64%)
 Frame = -2

Query: 403 RKALNESQTIVRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPAGR 260
           R  + +S+  V+  Y K+F VDEDG W+LL WKG++ + LS W P  R
Sbjct: 701 RDIVKKSKCKVKELYHKDFVVDEDGRWLLLGWKGRIIYALSAWTPNSR 748


>tr|B8AM74|B8AM74_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12502 PE=4 SV=1
          Length = 705

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 19/42 (45%), Positives = 30/42 (71%)
 Frame = -2

Query: 394 LNESQTIVRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKP 269
           + E+Q +VR GY K+F VDE+  W++L WKG++ +  S W+P
Sbjct: 657 VRETQDMVRKGYHKDFLVDEEDQWLVLGWKGRILYASSTWQP 698


>tr|A7PNN8|A7PNN8_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021332001
           PE=4 SV=1
          Length = 743

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = -2

Query: 403 RKALNESQTIVRCGYSKNFSVDEDGSWMLLCWKGKVAHGLSLWKPA 266
           R+ +  +   V   Y K+F +DED  WML  WKG++ + LS WKPA
Sbjct: 698 RETMKRATERVTTNYHKDFVIDEDSQWMLQGWKGRIIYALSAWKPA 743