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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916870
Clone id YMU001_000093_A05
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAAAATGATGAGATCAACCCCCCATGCGCCTGCAACACATTGGACTGCACAGGCTCGCT
CAGCAAAGTGCAAAAAGTCATCAAATGTCATATCAGAGAGCTTCTTGTAAATCCTTCGAA
ATGAGTTGAAATGCAACTGGGCTTTGGCTAATTTCTTTTCCTTGTCAGTCATTGGTCGCG
TAATCAGTTCTGACAATGACTTTCCAACCAAGTGCTTGCAGAAATTATCCACAGTGCAGA
GGCCAGACTGACTTTCCTCTCCTTTCTTTTTCGCCTCTAGAAGTATGATCTTAGCTACCA
GCTCCCCTGTAAATCCCCTGTCAATCCAACCAGCTGCCAGCGCATTCACTAGTGAGGTAT
AAAGTTCCCGACTCCTGCCTGATCCATTCAGACGTCTAATGGACTCTGCTACAGCATTTG
ATACAAG
■■Homology search results ■■ -
sp_hit_id Q5F9J2
Definition sp|Q5F9J2|PYRF_NEIG1 Orotidine 5'-phosphate decarboxylase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Align length 70
Score (bit) 29.6
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916870|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_A05.
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5F9J2|PYRF_NEIG1 Orotidine 5'-phosphate decarboxylase OS=Nei...    30   5.3  
sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding sub...    30   5.3  
sp|Q71YX4|RECX_LISMF Regulatory protein recX OS=Listeria monocyt...    29   7.0  
sp|P34733|LEU3_PICAN 3-isopropylmalate dehydrogenase OS=Pichia a...    29   7.0  
sp|Q67S57|GUAA_SYMTH GMP synthase [glutamine-hydrolyzing] OS=Sym...    29   7.0  
sp|Q6DH46|ACPL2_DANRE Acid phosphatase-like protein 2 OS=Danio r...    29   7.0  
sp|Q5GA85|L_TAVCV Large structural protein OS=Taro vein chlorosi...    29   8.8  
sp|Q1LTQ6|GSH1_BAUCH Glutamate--cysteine ligase OS=Baumannia cic...    29   8.8  
sp|P25653|FIG2_YEAST Factor-induced gene 2 protein OS=Saccharomy...    29   8.8  
sp|Q71F56|MD13L_HUMAN Mediator of RNA polymerase II transcriptio...    29   9.1  

>sp|Q5F9J2|PYRF_NEIG1 Orotidine 5'-phosphate decarboxylase
           OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
           GN=pyrF PE=3 SV=1
          Length = 246

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = -1

Query: 220 CKHLVGKSLSELITRPMTDKEKKLAKAQLHFNSFRRIYKKLSDMTFDDFLHFAERACAVQ 41
           C+  +GK L        T   + LA++ +H       +K   D+ + D  H   +AC V 
Sbjct: 41  CQIKIGKEL-------FTATGRSLAESLIHQG-----FKLFLDLKYHDIPHTVAQACKVA 88

Query: 40  CVAGAWGVDL 11
              G W VD+
Sbjct: 89  ADMGVWMVDM 98


>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding
           subunit clpA homolog CD4B, chloroplastic OS=Solanum
           lycopersicum GN=CD4B PE=3 SV=1
          Length = 923

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 421 SNAVAESIRRLNGSGRSRELYTSLVNALAAGWIDRGFTG 305
           S+   E   + NGSG+++   T L NA ++    R FTG
Sbjct: 13  SSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTG 51


>sp|Q71YX4|RECX_LISMF Regulatory protein recX OS=Listeria
           monocytogenes serotype 4b (strain F2365) GN=recX PE=3
           SV=1
          Length = 269

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
 Frame = -1

Query: 304 ELVAKIILLEAKKKGEESQSGLCTVDNFCKHLVGKSLSELITRPMTDKEKK--LAKAQLH 131
           E++A+  L++ K   E     +   D   K L  K+++ L  R  ++KE +  L K ++ 
Sbjct: 31  EVLARYQLMKGKVLTEAEIEEIKQADMVRKGL-NKAINFLSHRVRSEKEIRDYLRKQEME 89

Query: 130 FNSFRRIYKKLSDMTFDDFLHFAE 59
             +   I KKL+DM + + L FAE
Sbjct: 90  AFAIDEILKKLADMDYINDLEFAE 113


>sp|P34733|LEU3_PICAN 3-isopropylmalate dehydrogenase OS=Pichia
           angusta GN=LEU2 PE=3 SV=1
          Length = 362

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 307 GELVAKIILLEAKKKGEESQSGLCTVDNFCKHLVGKSLSELITRPMTDKEKKLAK 143
           G+ V   ++ EA K  E   S +    NF KHL+G +  +    P++D+  + AK
Sbjct: 10  GDHVGPEVVAEAVKVLEAVSSAIGVKFNFSKHLIGGASIDAYGVPLSDEALEAAK 64


>sp|Q67S57|GUAA_SYMTH GMP synthase [glutamine-hydrolyzing]
           OS=Symbiobacterium thermophilum GN=guaA PE=3 SV=1
          Length = 513

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
 Frame = -1

Query: 406 ESIRRLNGSGRSR-ELYTSLVNALAAGWIDRGFTGELVAKIILLEAKKKGEESQSGLCTV 230
           E IRR  GSGR    L   + +++AA  + +    +L    +     +KGE  Q      
Sbjct: 210 EEIRRQVGSGRVLCALSGGVDSSVAAVLVHKAVGDQLTCIFVDHGLMRKGEPEQVVRTFR 269

Query: 229 DNFCKHLVGKSLSELI---TRPMTDKEKKLAKAQLHFNSFRRIY----KKLSDMTF 83
           D+F  HLV    SE      R +TD E+   K ++  N F R++    +KL  + F
Sbjct: 270 DHFHIHLVHVDASERFLSKLRGVTDPEQ---KRKIIGNEFIRLFEDEARKLGQIDF 322


>sp|Q6DH46|ACPL2_DANRE Acid phosphatase-like protein 2 OS=Danio
           rerio GN=acpl2 PE=2 SV=1
          Length = 503

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = -1

Query: 400 IRRLNGSGRSRELYTSLVNALAAGWIDRGFTGELVAKIILLEAKKKGEESQSGLCTVDNF 221
           +R+L      R+ Y S  N LAA W+ R    E   K   L         QSGL  +  F
Sbjct: 172 VRQLKNGDHLRQAYISRHNLLAADWLPRQLWAETTGKSRTL---------QSGLAFLFGF 222

Query: 220 CKH 212
             H
Sbjct: 223 LPH 225


>sp|Q5GA85|L_TAVCV Large structural protein OS=Taro vein chlorosis
            virus GN=L PE=3 SV=1
          Length = 1928

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 81   SNVISESFL*ILRNELKCNWALANFFSLSVIGRVISSDNDFP---TKCLQKL 227
            S  ISESF+ ++R  +    AL    +  ++ R +  D+ FP   T C+  L
Sbjct: 1389 SRQISESFILLMRERINAATALQYMLNRVILARKLGLDSQFPIRSTSCVNLL 1440


>sp|Q1LTQ6|GSH1_BAUCH Glutamate--cysteine ligase OS=Baumannia
           cicadellinicola subsp. Homalodisca coagulata GN=gshA
           PE=3 SV=1
          Length = 523

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +3

Query: 30  PATHWTAQARSAKCKKSSNVISESFL*ILRNELKCNWALANFFSLS 167
           P T W   A  +    + ++IS  +L ++RN  +  W +   F  S
Sbjct: 157 PLTFWQVYAGVSDMNSNKDIISAGYLGLIRNYYRFGWIIPYIFGAS 202


>sp|P25653|FIG2_YEAST Factor-induced gene 2 protein OS=Saccharomyces
            cerevisiae GN=FIG2 PE=2 SV=2
          Length = 1609

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
 Frame = +3

Query: 9    MRSTPHAPATHWTAQARSAKCKKSS----------NVISESF-L*ILRNELKCNWALANF 155
            MRSTP    T  T+ +  A  KKSS          +V ++S  L    +E +   +++ +
Sbjct: 989  MRSTPFPYLTSSTSSSSLASTKKSSLEASSEMSTFSVSTQSLPLAFTSSEKRSTTSVSQW 1048

Query: 156  FSLSVIGRVISSDNDFPTKCLQKLSTVQRPD*LSSPFFFASRSMILATSSP 308
             +  +   ++SS ++        +ST ++P   +SP+ F+S   + ++S+P
Sbjct: 1049 SNTVLTNTIMSSSSNV-------ISTNEKPSSTTSPYNFSSGYSLPSSSTP 1092


>sp|Q71F56|MD13L_HUMAN Mediator of RNA polymerase II transcription
            subunit 13-like OS=Homo sapiens GN=MED13L PE=1 SV=1
          Length = 2210

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
 Frame = +1

Query: 55   LAQQSAKSHQMSYQRASCKSFEMS*NATGLWLISFPCQSLVA*SVLTMTFQPSACRNYPQ 234
            L Q  A S  M+Y     K    S   T L ++  P  S+V+  +     +       P+
Sbjct: 871  LEQHPAFSPVMNY-----KDGISSETVTALGMMESPMVSMVSTQLTEFKMEVEDGLGSPK 925

Query: 235  CRGQTDFPLL----SFSPLEV*S*LPAPL*IPCQSNQLPAHSLVRYKVPDSCL 381
                 DF  +    SF P  V S + APL        LP+H L+  K+PD+CL
Sbjct: 926  PEEIKDFSYVHKVPSFQPF-VGSSMFAPL------KMLPSHCLLPLKIPDACL 971
tr_hit_id B4AWG4
Definition tr|B4AWG4|B4AWG4_9CHRO Peptidase M16 domain protein OS=Cyanothece sp. PCC 7822
Align length 107
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916870|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_A05.
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4AWG4|B4AWG4_9CHRO Peptidase M16 domain protein OS=Cyanothec...    34   3.2  
tr|A4X9U2|A4X9U2_SALTO DNA polymerase III, alpha subunit OS=Sali...    34   4.2  
tr|B1FBC9|B1FBC9_9BURK Binding-protein-dependent transport syste...    33   5.3  
tr|B1WXK2|B1WXK2_CYAA5 Protease OS=Cyanothece (strain ATCC 51142...    33   7.2  
tr|A8LY60|A8LY60_SALAI DNA polymerase III, alpha subunit OS=Sali...    33   7.2  
tr|Q3M2V7|Q3M2V7_ANAVT Putative uncharacterized protein OS=Anaba...    33   9.1  

>tr|B4AWG4|B4AWG4_9CHRO Peptidase M16 domain protein OS=Cyanothece
           sp. PCC 7822 GN=Cyan7822DRAFT_0706 PE=3 SV=1
          Length = 518

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
 Frame = -1

Query: 418 NAVAESIRRLNGSGRSRELYTSLVN----ALAAGWIDRGFTGELVAKIILLEAKKKGEES 251
           NA+ E I  L   G +  LY SLV     ALAA   + GF  +    I+L  A       
Sbjct: 360 NAIYEVIASLMSDGLTSRLYKSLVEEKKVALAAQGFN-GFPDDKYPNIMLFYAMTAPN-- 416

Query: 250 QSGLCTVDNFCKHLVGKSLSELITRPMTDKEKKLAKAQLHFNSFRRI 110
                TVD+  K L    +  L T P+++KE +  K QL     R +
Sbjct: 417 ----ATVDDVAKAL-AVEIERLKTEPVSEKELERVKTQLRAELLRSL 458


>tr|A4X9U2|A4X9U2_SALTO DNA polymerase III, alpha subunit
           OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818
           / CNB-440) GN=Strop_3239 PE=4 SV=1
          Length = 1124

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 415 AVAESIRRLNGSGRSRELYTSLVNALAAGWIDRGFTGEL 299
           A A+ +RR  G+ RS E    + + L AG  +RG TGEL
Sbjct: 745 AEADQLRRAMGAKRSAERMARIADRLYAGMAERGITGEL 783


>tr|B1FBC9|B1FBC9_9BURK Binding-protein-dependent transport systems
           inner membrane component OS=Burkholderia ambifaria
           IOP40-10 GN=BamIOP4010DRAFT_1338 PE=3 SV=1
          Length = 371

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 6   MMRSTPHAPATHWTAQARSAKCKKSSNVISESFL*ILRNELKCNWALANF---FSLSVIG 176
           M  STP + +T WTA A  A    S +    ++L   R  L   W+L  F   F LS++G
Sbjct: 1   MSSSTPASNSTAWTADASGAAHAASPSPWRRTWLRFRRQRLG-YWSLVIFVSLFVLSLLG 59

Query: 177 RVISSD 194
            V+S+D
Sbjct: 60  EVLSND 65


>tr|B1WXK2|B1WXK2_CYAA5 Protease OS=Cyanothece (strain ATCC 51142)
           GN=cce_3195 PE=4 SV=1
          Length = 517

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
 Frame = -1

Query: 418 NAVAESIRRLNGSGRSRELYTSLVNALAAGWIDRGFTG---ELVAKIILLEAKKKGEESQ 248
           +A+ + I  L  SGR+  LY SLV       + +GF G   E    ++L  A+     S 
Sbjct: 359 SAIYQVISTLLSSGRTSRLYKSLVEDKQVALVAQGFNGFPAEKYPNLMLFYAQTAPNASI 418

Query: 247 SGLCTVDNFCKHLVGKSLSELITRPMTDKEKKLAKAQLHFNSFRRIYKKL 98
             + T        +   + +L T+P+ ++E +  K QL     R +   L
Sbjct: 419 EDVATA-------LSLEIDKLKTQPVFEQELQRVKNQLRAGLLRSLDSNL 461


>tr|A8LY60|A8LY60_SALAI DNA polymerase III, alpha subunit
           OS=Salinispora arenicola (strain CNS-205) GN=Sare_3466
           PE=4 SV=1
          Length = 1124

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 415 AVAESIRRLNGSGRSRELYTSLVNALAAGWIDRGFTGEL 299
           A A+ +RR  G+ RS E    + + L AG  +RG TGEL
Sbjct: 745 AEADQLRRAMGAKRSVERMARIADRLYAGMAERGITGEL 783


>tr|Q3M2V7|Q3M2V7_ANAVT Putative uncharacterized protein OS=Anabaena
           variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_D0014
           PE=4 SV=1
          Length = 484

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -3

Query: 239 LHCG*FLQALGWKVIVRTDYATND*QGKEISQSPVAFQL 123
           +HC  F+ A GWK IV+     +D  GKE+S  P  F L
Sbjct: 236 IHCTDFIPAKGWKQIVQQAIVDDD-DGKEVSYWPERFTL 273