BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916872|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_A09.
         (269 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protei...    31   1.7  
sp|Q9P6L8|SRB8_SCHPO Mediator of RNA polymerase II transcription...    29   8.4  

>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-H87 PE=2 SV=1
          Length = 633

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 267 ACAIINTPRGKDIHVTKNMTVC 202
           A A++NTP G  IH+ KN+ VC
Sbjct: 572 AFALLNTPPGSTIHIKKNIRVC 593


>sp|Q9P6L8|SRB8_SCHPO Mediator of RNA polymerase II transcription
            subunit 12 OS=Schizosaccharomyces pombe GN=srb8 PE=1 SV=1
          Length = 1233

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
 Frame = +2

Query: 29   VDVDIF*LSPFNGMPPTQSLRKL--------AYTLYHDVAFL*SRFRFKLMGVLV 169
            V +DI     F+G+P TQS ++L        + TLY  V+F  S F FK + VLV
Sbjct: 1175 VILDILNFLKFSGIP-TQSKKRLEVHMLNFISSTLYLKVSFCSSNFLFKTISVLV 1228

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916872|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_A09.
         (269 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******