BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916877|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_B02.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12RU8|RAPA_SHEDO RNA polymerase-associated protein rapA OS=S...    30   6.5  
sp|O95197|RTN3_HUMAN Reticulon-3 OS=Homo sapiens GN=RTN3 PE=1 SV=2     30   8.7  

>sp|Q12RU8|RAPA_SHEDO RNA polymerase-associated protein rapA
           OS=Shewanella denitrificans (strain OS217 / ATCC
           BAA-1090 / DSM 15013) GN=rapA PE=3 SV=1
          Length = 968

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 278 NI*LSLSHFNFNPTQNSLNS*IALKVVSISTPLIHPL 168
           N+   + + NF    +++N  IA K+V+ S PL+HPL
Sbjct: 851 NLATKVDYNNFEKQLSAVNRHIASKLVNASQPLLHPL 887


>sp|O95197|RTN3_HUMAN Reticulon-3 OS=Homo sapiens GN=RTN3 PE=1 SV=2
          Length = 1032

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 450 HCCF*SLPSSFPEWDSFLLYKISQMSVQ 367
           HC   S+P+SFPE  +FL  KI Q+  Q
Sbjct: 152 HCDRPSIPASFPEHPAFLSKKIGQVEEQ 179

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916877|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_B02.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4AJI4|B4AJI4_BACPU Spore coat polysaccharide biosynthesis pr...    34   3.7  
tr|A8FIL7|A8FIL7_BACP2 Possible spore coat polysaccharide biosyn...    34   4.8  

>tr|B4AJI4|B4AJI4_BACPU Spore coat polysaccharide biosynthesis
           protein SpsD OS=Bacillus pumilus ATCC 7061 GN=BAT_0873
           PE=4 SV=1
          Length = 291

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 506 LLRLCVDPIGIEMGSSTIDIVVSKVSLRHFPNGIHFCYIRFLKCLFSEQPYLRQIIYQ 333
           L RL   P+ +EM S+  D+V+S    + +   +   Y  F+K  ++  P+L Q + Q
Sbjct: 120 LTRLEAPPVHMEMPSTGEDVVISLPDEKEYDEAVSLAYQAFVKSRYALDPFLDQNVVQ 177


>tr|A8FIL7|A8FIL7_BACP2 Possible spore coat polysaccharide
           biosynthesis protein SpsD OS=Bacillus pumilus (strain
           SAFR-032) GN=spsD PE=4 SV=1
          Length = 291

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 506 LLRLCVDPIGIEMGSSTIDIVVSKVSLRHFPNGIHFCYIRFLKCLFSEQPYLRQ 345
           L RL   P+ +EM S++ D+V+S    + +   +   Y  F+K  ++  P+L Q
Sbjct: 120 LTRLEAPPVHMEMPSTSEDVVISLPDEKEYDEAVSLAYQAFVKSRYALDPFLDQ 173