BP916879
Clone id YMU001_000093_B04
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTAGTACAACTAAACCTTAATCATGTAAGGACCACAAAATCGAAACAATCTGGGTGGG
TGTATCTCCAGTATCATGCAATAAATTACAACTCAACAAGGTCATCGACTTTTGCAACCC
TACGATTACCCTGAGAGCATTTTGCTGACGAAGAAAATTCCTCAAGACTGTTCAGGAGAC
TCATTTCTCTAAATTTACATCAGTCATCTTCACTCTGATCATGTCCATGAACAGTCCCAG
AAAACCTTACAAAATTTTTCCAATGACTAATAACTACAATGAGGACAGCAGGCGCCGGGG
CCGACCAAACCTGCCGTTGTGCTCCAGCCATTATGGAAGAGCAGCATCTTTGTACATCAC
TTGCAATCGATCGGGGATGTTGCCATCTCTCCGACAATGAAGGCTCAGCTATCATAGATG
TATGTACCCCGTGTCAATTAGCTATACGAGCCTGGAAGTTGCAGGTGATCGTCATTTGAA
GAATAGGGCCCCGGTGCTGTAGGTTAGCATGAAAAGTAATCTGTCTTGGAGAGCCCTTCT
TTTATGATCCCACA
■■Homology search results ■■ -
sp_hit_id A9IMR9
Definition sp|A9IMR9|PNP_BART1 Polyribonucleotide nucleotidyltransferase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)
Align length 92
Score (bit) 30.4
E-value 6.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916879|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_B04.
(554 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A9IMR9|PNP_BART1 Polyribonucleotide nucleotidyltransferase OS... 30 6.0
sp|Q6G5F8|PNP_BARHE Polyribonucleotide nucleotidyltransferase OS... 30 6.0
sp|Q0WRC9|FB218_ARATH F-box protein At4g02740 OS=Arabidopsis tha... 30 6.0
sp|Q036B8|ADD_LACC3 Adenosine deaminase OS=Lactobacillus casei (... 30 7.9

>sp|A9IMR9|PNP_BART1 Polyribonucleotide nucleotidyltransferase
OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)
GN=pnp PE=3 SV=1
Length = 731

Score = 30.4 bits (67), Expect = 6.0
Identities = 25/92 (27%), Positives = 38/92 (41%)
Frame = +2

Query: 29 KDHKIETIWVGVSPVSCNKLQLNKVIDFCNPTITLRAFC*RRKFLKTVQETHFSKFTSVI 208
K HKIE W G P++ L+ K+ + + + T ET ++
Sbjct: 3 KTHKIEIEWAG-RPLT---LETGKIARQADGAV-----------IATYGET-------IV 40

Query: 209 FTLIMSMNSPRKPYKIFPMTNNYNEDSRRRGR 304
++S SP+ FP+T NY E S GR
Sbjct: 41 LATVVSAKSPKPDQDFFPLTVNYQEKSYAVGR 72


>sp|Q6G5F8|PNP_BARHE Polyribonucleotide nucleotidyltransferase
OS=Bartonella henselae GN=pnp PE=3 SV=1
Length = 733

Score = 30.4 bits (67), Expect = 6.0
Identities = 25/92 (27%), Positives = 38/92 (41%)
Frame = +2

Query: 29 KDHKIETIWVGVSPVSCNKLQLNKVIDFCNPTITLRAFC*RRKFLKTVQETHFSKFTSVI 208
K HKIE W G P++ L+ K+ + + + T ET ++
Sbjct: 3 KTHKIEIEWAG-RPLT---LETGKIARQADGAV-----------IATYGET-------IV 40

Query: 209 FTLIMSMNSPRKPYKIFPMTNNYNEDSRRRGR 304
++S SP+ FP+T NY E S GR
Sbjct: 41 LATVVSAKSPKPDQDFFPLTVNYQEKSYAVGR 72


>sp|Q0WRC9|FB218_ARATH F-box protein At4g02740 OS=Arabidopsis
thaliana GN=At4g02740 PE=1 SV=1
Length = 479

Score = 30.4 bits (67), Expect = 6.0
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2

Query: 23 SCKDHKIETIWVGVSPVSCNKLQLNKVIDFCNPTIT 130
SCK++ ++T+ + SC KLQ +V++FCN +T
Sbjct: 334 SCKENLLKTLILR----SCPKLQEKEVLEFCNSLLT 365


>sp|Q036B8|ADD_LACC3 Adenosine deaminase OS=Lactobacillus casei
(strain ATCC 334) GN=add PE=3 SV=1
Length = 339

Score = 30.0 bits (66), Expect = 7.9
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3

Query: 288 AGAGAD-QTCRCAPAIMEEQHLCTSLAIDRGCCHLSDNEGSAI 413
AG AD T CAPAI Q L L G CH N G A+
Sbjct: 171 AGNEADFPTNVCAPAIKTAQSLGVPLTFHAGECHCPQNIGEAV 213


tr_hit_id A4EDD7
Definition tr|A4EDD7|A4EDD7_9RHOB Oxidoreductase-like protein OS=Roseobacter sp. CCS2
Align length 70
Score (bit) 33.5
E-value 7.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916879|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_B04.
(554 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A4EDD7|A4EDD7_9RHOB Oxidoreductase-like protein OS=Roseobacte... 33 7.8

>tr|A4EDD7|A4EDD7_9RHOB Oxidoreductase-like protein OS=Roseobacter
sp. CCS2 GN=RCCS2_03469 PE=4 SV=1
Length = 324

Score = 33.5 bits (75), Expect = 7.8
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2

Query: 526 RQITFHANLQHRGPILQMTITCNFQARIAN*HGVHTSMIAEPSLSERWQHPRSIASDVQR 347
+QITFH G +T+TC F A + + + A+ +ERW V+
Sbjct: 235 QQITFH------GKKGVLTLTCPFNADVFDAATLTLENAAQTVTTERWPGVNQYVLQVEN 288

Query: 346 CCSSIMAGAQ 317
C+S+ GA+
Sbjct: 289 FCNSVQTGAE 298