BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916884|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_B11.
         (424 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1    32   0.80 
sp|O33006|SECY_MYCLE Preprotein translocase subunit secY OS=Myco...    31   1.8  
sp|P19936|PYRI_SERMA Aspartate carbamoyltransferase regulatory c...    30   3.0  
sp|P0A5Z2|SECY_MYCTU Preprotein translocase subunit secY OS=Myco...    29   6.8  
sp|P0A5Z3|SECY_MYCBO Preprotein translocase subunit secY OS=Myco...    29   6.8  
sp|Q6NW52|MSRB2_DANRE Methionine-R-sulfoxide reductase B2, mitoc...    29   8.8  

>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
          Length = 5255

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +1

Query: 13   HAIAMHAPPSGLKAQTSPPGLIHSAVCIAATYLDGDVIFVKKGAGQPSGLSAHGTWSWNR 192
            H +    PP  L  +  P   IHSA C + T L G +   +    +  G S  G WS   
Sbjct: 3833 HLLGTRGPPLALDQELPPGSTIHSA-CTSCTCLHGRLNCSEPVCPRDGGFSPWGPWSSCS 3891

Query: 193  FSC 201
             SC
Sbjct: 3892 RSC 3894


>sp|O33006|SECY_MYCLE Preprotein translocase subunit secY
           OS=Mycobacterium leprae GN=secY PE=3 SV=1
          Length = 438

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 19  IAMHAPPSGLKAQTSPPGLIHSAVCIAATYLDGDVIFVKKG 141
           IA   P  G +   S  G+I +AVC+AA  +   V+FV++G
Sbjct: 195 IAARIPAEGKQILDSRGGVIFAAVCLAALVIIVGVVFVEQG 235


>sp|P19936|PYRI_SERMA Aspartate carbamoyltransferase regulatory
           chain OS=Serratia marcescens GN=pyrI PE=3 SV=3
          Length = 154

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = -2

Query: 126 DHITIKISCCNANC-RMNEAGRGGLSLEARGG-----CMHCNRVF 10
           DHI   ++C N NC   +E  R   S+++RGG     C +C + F
Sbjct: 101 DHIDGVLTCPNGNCISRSEPVRSSFSVKSRGGEVHLKCRYCEKEF 145


>sp|P0A5Z2|SECY_MYCTU Preprotein translocase subunit secY
           OS=Mycobacterium tuberculosis GN=secY PE=3 SV=1
          Length = 441

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 19  IAMHAPPSGLKAQTSPPGLIHSAVCIAATYLDGDVIFVKKG 141
           IA   P  G     S  G++ +AVC AA  +   V+FV++G
Sbjct: 198 IAARIPAEGQSILESRGGVVFTAVCAAALIIIVGVVFVEQG 238


>sp|P0A5Z3|SECY_MYCBO Preprotein translocase subunit secY
           OS=Mycobacterium bovis GN=secY PE=3 SV=1
          Length = 441

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 19  IAMHAPPSGLKAQTSPPGLIHSAVCIAATYLDGDVIFVKKG 141
           IA   P  G     S  G++ +AVC AA  +   V+FV++G
Sbjct: 198 IAARIPAEGQSILESRGGVVFTAVCAAALIIIVGVVFVEQG 238


>sp|Q6NW52|MSRB2_DANRE Methionine-R-sulfoxide reductase B2,
           mitochondrial OS=Danio rerio GN=msrb2 PE=2 SV=1
          Length = 180

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 34  PPSGLKAQTSPPGLIHSAVCIAATYLDGDVIFVKKGAGQPSGLSAHGTW 180
           P SG+    +  G+ H  VC  +     +  +   GAG PS   AHGTW
Sbjct: 72  PFSGIYLNHNEVGMYH-CVCCDSPLFSSEAKY-DAGAGWPSFCEAHGTW 118

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916884|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_B11.
         (424 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0CP40|A0CP40_PARTE Chromosome undetermined scaffold_23, whol...    34   3.1  
tr|Q23CN8|Q23CN8_TETTH Putative uncharacterized protein OS=Tetra...    33   5.4  

>tr|A0CP40|A0CP40_PARTE Chromosome undetermined scaffold_23, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00008948001 PE=4 SV=1
          Length = 489

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 274 LDSRECDQLGAEPAFMSADSAKMKYKKIDSNSKYHEH*VLKAGQ-LLSLQRSHHHQDK 104
           LD  + +Q    P         +K KK+DSN KYHE  + K  Q L  LQ+ H    K
Sbjct: 88  LDINDANQKKIRPNSRQQIQHLVKSKKLDSNLKYHEELIQKQFQKLFELQKQHQQTHK 145


>tr|Q23CN8|Q23CN8_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00854210 PE=4
           SV=1
          Length = 909

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 3   GWQTRDCNACTPLGPQGSNLPSRPHSFCSLHCSNLS*W---*CDLC 131
           GW   DCN CTPL P  S          ++ C+++S W    C LC
Sbjct: 582 GWSDYDCNLCTPLSPYAS-FDGTKCVASTISCNSVSGWTNKNCQLC 626