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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916886
Clone id YMU001_000093_C01
Library
Length 421
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCGGGCTTTTCGCCTTCGCCAAGCCAATACACTCCTACTGGAAGCAGTAGATGAACTGAG
AGTAAGGCTCTTGCATTGAAACTTGGAATAGTGCTAGTGCAGAGTGTTCTTTGAGTTGAG
AAAGTGCACGGCGAAGCCACTGCACTTCTGACCTGACCATCCTTCTCGTCGACGGTGAAG
CAACTAACAGAGTCGAACTTTTTAAAGCTTTCTTTGCACTCAGTCTAAAACCAAAAAAAA
GAAAGGTTTTTCTTGAACTGTGCTGCTCATGAGGCTGCTTACTGGGGAGGATGGTGGATG
ATGACATGTGACGCTTGTGAGGAGCTATGGAGTCATGGACCTGTGGTGTCGTATATGGTT
ATGGAAACTTCCCAAAGCTACGCAGGGTCCAGCTAGATCGGGGATATTTAATGTGCGGAT
A
■■Homology search results ■■ -
sp_hit_id Q7FB12
Definition sp|Q7FB12|NDHM_ORYSJ NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. japonica
Align length 55
Score (bit) 30.0
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916886|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_C01.
         (421 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7FB12|NDHM_ORYSJ NAD(P)H-quinone oxidoreductase subunit M, c...    30   3.9  
sp|A2XVZ1|NDHM_ORYSI NAD(P)H-quinone oxidoreductase subunit M, c...    30   3.9  
sp|Q91513|PRLR_ORENI Prolactin receptor OS=Oreochromis niloticus...    30   5.0  
sp|O74508|SPP1_SCHPO Set1 complex component spp1 OS=Schizosaccha...    29   6.6  
sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protei...    29   6.6  
sp|O97859|NEUR3_BOVIN Sialidase-3 OS=Bos taurus GN=NEU3 PE=1 SV=1      29   6.6  
sp|Q9SV36|ARK1_ARATH Armadillo repeat-containing kinesin-like pr...    29   8.6  

>sp|Q7FB12|NDHM_ORYSJ NAD(P)H-quinone oxidoreductase subunit M,
           chloroplastic OS=Oryza sativa subsp. japonica GN=ndhM
           PE=2 SV=1
          Length = 220

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -1

Query: 409 KYPRSSWTLRSFGKFP*PYTTPQVHDSIAPHKRHMSSSTILPSKQPHEQHSSRKT 245
           + PR++WT R   +FP P         +   +   +   + P  Q  EQ   RKT
Sbjct: 19  RLPRATWTARRSVRFP-PVRAQDQQQQVKEEEEEAAVENLPPPPQEEEQRRERKT 72


>sp|A2XVZ1|NDHM_ORYSI NAD(P)H-quinone oxidoreductase subunit M,
           chloroplastic OS=Oryza sativa subsp. indica GN=ndhM PE=2
           SV=1
          Length = 220

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -1

Query: 409 KYPRSSWTLRSFGKFP*PYTTPQVHDSIAPHKRHMSSSTILPSKQPHEQHSSRKT 245
           + PR++WT R   +FP P         +   +   +   + P  Q  EQ   RKT
Sbjct: 19  RLPRATWTARRSVRFP-PVRAQDQQQQVKEEEEEAAVENLPPPPQEEEQRRERKT 72


>sp|Q91513|PRLR_ORENI Prolactin receptor OS=Oreochromis niloticus
           GN=prlr PE=2 SV=1
          Length = 630

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 358 PYTTPQVHDSIAPHKRHMSSSTILPSKQPHEQH 260
           PY+    H+S+  HK+H  S+T  P   P   H
Sbjct: 426 PYSPLDPHNSLEMHKQHCLSNTQFPPGSPSSDH 458


>sp|O74508|SPP1_SCHPO Set1 complex component spp1
           OS=Schizosaccharomyces pombe GN=spp1 PE=2 SV=1
          Length = 424

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 289 GWWMMTCDACEELWSHGPVVS 351
           G WM+ CD CE+ W HG  V+
Sbjct: 129 GSWMLGCDGCED-WFHGTCVN 148


>sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein
           At4g30825, chloroplastic OS=Arabidopsis thaliana
           GN=At4g30825 PE=2 SV=2
          Length = 904

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 387 PCVALGSFHNHIR 349
           PCV  GSFHNHIR
Sbjct: 473 PCVLKGSFHNHIR 485


>sp|O97859|NEUR3_BOVIN Sialidase-3 OS=Bos taurus GN=NEU3 PE=1 SV=1
          Length = 428

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +1

Query: 133 EATALLT*PSFSSTVKQLTESNFLKLS--LHSV*NQKKER----FFLNCAAHEAAYWGGW 294
           +A A+   P   S+V+   E+  L  S  L+S    KK R     +LN +  EAA W   
Sbjct: 302 DAPAIQQSPLLCSSVRPEPEAGTLSESWLLYSHPTNKKRRVDLGIYLNQSPLEAACWSRP 361

Query: 295 WMMTCDAC 318
           W++ C  C
Sbjct: 362 WILHCGPC 369


>sp|Q9SV36|ARK1_ARATH Armadillo repeat-containing kinesin-like
           protein 1 OS=Arabidopsis thaliana GN=ARK1 PE=1 SV=2
          Length = 1051

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
 Frame = -1

Query: 397 SSWTLRSFGKFP*PYTTPQVHDSIAPHKRHM----SSSTILPSKQ----PHEQHSSRKTF 242
           SS  +RS  K    +   ++   + P+  H     SSS  LP++     P   HSSR   
Sbjct: 6   SSSAVRSSAK----HAAERIQQHLPPNSNHAVSLSSSSLNLPARTSIVAPGIAHSSR--- 58

Query: 241 LFFGFRLSAKKALKSSTLLVASPSTRR 161
                R SA  +  SS++  +SPSTRR
Sbjct: 59  --LKDRPSASSSSSSSSVSASSPSTRR 83
tr_hit_id Q4C9A4
Definition tr|Q4C9A4|Q4C9A4_CROWT Putative uncharacterized protein OS=Crocosphaera watsonii
Align length 26
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916886|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_C01.
         (421 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4C9A4|Q4C9A4_CROWT Putative uncharacterized protein OS=Croco...    35   1.8  
tr|A4VQ24|A4VQ24_PSEU5 Type II restriction enzyme, methylase sub...    34   3.1  
tr|B5VW16|B5VW16_SPIMA Putative uncharacterized protein OS=Arthr...    34   3.1  
tr|B4TG70|B4TG70_SALHS Type II restriction enzyme, methylase sub...    33   7.0  
tr|B3E6K0|B3E6K0_GEOLS Putative uncharacterized protein OS=Geoba...    33   7.0  
tr|B5WD81|B5WD81_9BURK N6 adenine-specific DNA methyltransferase...    33   7.0  
tr|B5P783|B5P783_SALET Putative uncharacterized protein OS=Salmo...    33   7.0  
tr|Q8XC72|Q8XC72_ECO57 Putative uncharacterized protein OS=Esche...    33   9.2  
tr|B5Z3P2|B5Z3P2_ECO5E Putative uncharacterized protein OS=Esche...    33   9.2  
tr|B1LDN8|B1LDN8_ECOSM Putative uncharacterized protein OS=Esche...    33   9.2  
tr|B1ITR8|B1ITR8_ECOLC Putative uncharacterized protein OS=Esche...    33   9.2  
tr|Q7A8N7|Q7A8N7_ECO57 Putative uncharacterized protein ECs5262 ...    33   9.2  
tr|B6ZTY5|B6ZTY5_ECO57 Putative uncharacterized protein OS=Esche...    33   9.2  
tr|B3BSL5|B3BSL5_ECO57 Type II restriction enzyme, methylase sub...    33   9.2  
tr|B3BBG1|B3BBG1_ECO57 Type II restriction enzyme, methylase sub...    33   9.2  
tr|B3AZ45|B3AZ45_ECO57 Type II restriction enzyme, methylase sub...    33   9.2  
tr|B3AHV8|B3AHV8_ECO57 Type II restriction enzyme, methylase sub...    33   9.2  
tr|B3A5B5|B3A5B5_ECO57 Type II restriction enzyme, methylase sub...    33   9.2  
tr|B2PQ43|B2PQ43_ECO57 Type II restriction enzyme, methylase sub...    33   9.2  
tr|B2P6D3|B2P6D3_ECO57 Type II restriction enzyme, methylase sub...    33   9.2  
tr|B2NPL2|B2NPL2_ECO57 Type II restriction enzyme, methylase sub...    33   9.2  
tr|A0Z4T6|A0Z4T6_9GAMM Helicase, putative OS=marine gamma proteo...    33   9.2  

>tr|Q4C9A4|Q4C9A4_CROWT Putative uncharacterized protein
           OS=Crocosphaera watsonii GN=CwatDRAFT_6410 PE=4 SV=1
          Length = 1678

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 332 VMDLWCRIWLWKLPKATQGPARSGIF 409
           VMD WC +W WK+ KA   P R+  +
Sbjct: 908 VMDYWCALWFWKIEKADLLPTRNEFY 933


>tr|A4VQ24|A4VQ24_PSEU5 Type II restriction enzyme, methylase
           subunit OS=Pseudomonas stutzeri (strain A1501)
           GN=PST_3447 PE=4 SV=1
          Length = 1635

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 332 VMDLWCRIWLWKLPKATQGPAR 397
           VMD WC +W W L KA + P+R
Sbjct: 859 VMDAWCALWFWPLDKAGELPSR 880


>tr|B5VW16|B5VW16_SPIMA Putative uncharacterized protein
           OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_0708 PE=4 SV=1
          Length = 864

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 332 VMDLWCRIWLWKLPKATQGPARSGIFN 412
           VMD WC +W W L +A   P+R   F+
Sbjct: 112 VMDYWCSLWFWPLEEAENLPSREEFFS 138


>tr|B4TG70|B4TG70_SALHS Type II restriction enzyme, methylase
           subunit OS=Salmonella heidelberg (strain SL476)
           GN=SeHA_C4895 PE=4 SV=1
          Length = 1640

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 332 VMDLWCRIWLWKLPKATQGPAR 397
           VMD WC +W W + KA + P R
Sbjct: 852 VMDYWCALWFWPIDKANELPDR 873


>tr|B3E6K0|B3E6K0_GEOLS Putative uncharacterized protein
           OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 /
           SZ) GN=Glov_1103 PE=4 SV=1
          Length = 408

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = -1

Query: 286 PSKQPHEQHSSRKTFLFFGFRLSAKKALKSSTLLVASPSTRRMVRSEVQWLRRALSQLKE 107
           P + PHE+H     +L    R+   KAL +S         R+    E Q L+R + QLK 
Sbjct: 100 PQEGPHERHPVCTPYLNLLDRIKNDKALATSF------DERQKAERETQELQRRIDQLKG 153

Query: 106 HSALALFQVSMQEP 65
               AL +   Q+P
Sbjct: 154 SYDTALLEAIAQQP 167


>tr|B5WD81|B5WD81_9BURK N6 adenine-specific DNA methyltransferase
           OS=Burkholderia sp. H160 GN=BH160DRAFT_1032 PE=4 SV=1
          Length = 1703

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 332 VMDLWCRIWLWKLPKATQGPAR 397
           VMD WC +W W + ++ Q P+R
Sbjct: 881 VMDFWCALWFWPITQSAQLPSR 902


>tr|B5P783|B5P783_SALET Putative uncharacterized protein
           OS=Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486 GN=SeHB_A4623 PE=4 SV=1
          Length = 1640

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 332 VMDLWCRIWLWKLPKATQGPAR 397
           VMD WC +W W + KA + P R
Sbjct: 852 VMDYWCALWFWPIDKANELPDR 873


>tr|Q8XC72|Q8XC72_ECO57 Putative uncharacterized protein
           OS=Escherichia coli O157:H7 GN=Z5900 PE=4 SV=2
          Length = 1644

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 332 VMDLWCRIWLWKLPKATQGPAR 397
           VMD WC +W W + KA + P R
Sbjct: 852 VMDYWCALWFWPIDKADELPDR 873


>tr|B5Z3P2|B5Z3P2_ECO5E Putative uncharacterized protein
           OS=Escherichia coli O157:H7 (strain EC4115 / EHEC)
           GN=ECH74115_5809 PE=4 SV=1
          Length = 1644

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 332 VMDLWCRIWLWKLPKATQGPAR 397
           VMD WC +W W + KA + P R
Sbjct: 852 VMDYWCALWFWPIDKADELPDR 873


>tr|B1LDN8|B1LDN8_ECOSM Putative uncharacterized protein
           OS=Escherichia coli (strain SMS-3-5 / SECEC)
           GN=EcSMS35_4829 PE=4 SV=1
          Length = 1640

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 332 VMDLWCRIWLWKLPKATQGPAR 397
           VMD WC +W W + KA + P R
Sbjct: 852 VMDYWCALWFWPIDKADELPDR 873