NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916887
Clone id YMU001_000093_C02
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAAGTGTATAGTATAGATCTGTTAAACCCTCTATCACATGACCTTCTGGCCCTATCCAT
AATAATATCCATACTTGGTCTTGTACACCTTGCTAGGATCATGCTCATGTGATCCTTAAG
GTGTACTTGACGTGCCAAGTGGTGTAGCTACTAAAGACAGAGGTGGATGCTCTCTTGATG
GTGTCAATGCATCGGTAGCACCATGATTGCAACAACCACCAGCCAAGGTAAACACCCACT
TGAACGAGTCCTACGACGTCTCGAAGAGTCATAGAGCATAGTCTCTGATGTAGCACAATC
AATCGTTGTAACTGGCACACTCATGGTTGGTGTGGCACCACCTATCAATGTAACTAGCAC
ACGTATCATAGATGTCAAAATGGGTGTATTTGGTTGGGGAAGGACTAACGCTCAAAAATC
TATGTGCATATGTATACTGCTCAAGTGAAGATTGCGAGAAAAATGCATGCAGCTGCTCAA
GTGACATGCCAATTGGAGTAACAAAAAATTTGAATCTCAGAGAGTATGGCTCCTCATCAT
■■Homology search results ■■ -
sp_hit_id Q8TFG4
Definition sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c OS=Schizosaccharomyces pombe
Align length 44
Score (bit) 34.3
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916887|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_C02.
         (540 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c OS=Schiz...    34   0.40 
sp|O84712|CLPP2_CHLTR ATP-dependent Clp protease proteolytic sub...    31   3.4  
sp|Q3KKY8|CLPP2_CHLTA ATP-dependent Clp protease proteolytic sub...    31   3.4  
sp|P50817|VL1_HPV48 Major capsid protein L1 OS=Human papillomavi...    30   7.5  
sp|P67794|COX1_CHOPI Cytochrome c oxidase subunit 1 OS=Choriston...    30   9.8  
sp|P67793|COX1_CHOOC Cytochrome c oxidase subunit 1 OS=Choriston...    30   9.8  
sp|P50669|COX1_CHOFU Cytochrome c oxidase subunit 1 OS=Choriston...    30   9.8  
sp|P50668|COX1_CHOBI Cytochrome c oxidase subunit 1 OS=Choriston...    30   9.8  

>sp|Q8TFG4|YL54_SCHPO Uncharacterized protein PB18E9.04c
           OS=Schizosaccharomyces pombe GN=SPAPB18E9.04c PE=2 SV=1
          Length = 800

 Score = 34.3 bits (77), Expect = 0.40
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 402 LPQPNTPILTSMIRVLVTLIGGATPTMSVPVTTIDCATSETMLY 271
           +P  +TP+ +S        I  +TP  S PVTT +C TS ++LY
Sbjct: 502 VPYTSTPVTSSNYT-----ISSSTPVTSTPVTTTNCTTSTSVLY 540



 Score = 34.3 bits (77), Expect = 0.40
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 402 LPQPNTPILTSMIRVLVTLIGGATPTMSVPVTTIDCATSETMLY 271
           +P  +TP+ +S        I  +TP  S PVTT +C TS ++LY
Sbjct: 561 VPYTSTPVTSSNYT-----ISSSTPVTSTPVTTTNCTTSTSVLY 599



 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 399 PQPNTPILTSMIRVLVTLIGGATPTMSVPVTTIDCATSETMLY 271
           P  +TP+ T+      ++   +TP  S P+TT +C TS ++ Y
Sbjct: 462 PVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPY 504



 Score = 31.6 bits (70), Expect = 2.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 399 PQPNTPILTSMIRVLVTLIGGATPTMSVPVTTIDCATSETMLY 271
           P  +TP+ T+      +++  +TP  S P+ T +C TS ++ Y
Sbjct: 521 PVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPY 563



 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 399 PQPNTPILTSMIRVLVTLIGGATPTMSVPVTTIDCATSETMLY 271
           P  +TP+ T+      ++   +TP  S P+TT +C TS ++ Y
Sbjct: 439 PVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPY 481


>sp|O84712|CLPP2_CHLTR ATP-dependent Clp protease proteolytic
           subunit 2 OS=Chlamydia trachomatis GN=clpP2 PE=3 SV=1
          Length = 203

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 120 LKDHMSMILARCTRPSMDIIMDRARRSCDRGFNRSILYTL 1
           LK H+S ILA CT  S++ I++ + R    G   +I Y L
Sbjct: 146 LKKHLSNILAECTGQSVEKIIEDSERDFFMGAEEAIAYGL 185


>sp|Q3KKY8|CLPP2_CHLTA ATP-dependent Clp protease proteolytic
           subunit 2 OS=Chlamydia trachomatis (strain A/HAR-13 /
           ATCC VR-571B) GN=clpP2 PE=3 SV=1
          Length = 203

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 120 LKDHMSMILARCTRPSMDIIMDRARRSCDRGFNRSILYTL 1
           LK H+S ILA CT  S++ I++ + R    G   +I Y L
Sbjct: 146 LKKHLSNILAECTGQSVEKIIEDSERDFFMGAEEAIAYGL 185


>sp|P50817|VL1_HPV48 Major capsid protein L1 OS=Human papillomavirus
           type 48 GN=L1 PE=3 SV=2
          Length = 513

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 329 GVAPPINVTSTRIIDVKMGVFGWGRTNAQKSM 424
           G APPI + +T I D  MG  G+G  N  K M
Sbjct: 180 GAAPPIQLVNTVIQDGDMGDIGFGAANFPKLM 211


>sp|P67794|COX1_CHOPI Cytochrome c oxidase subunit 1
           OS=Choristoneura pinus GN=COI PE=3 SV=2
          Length = 513

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = -3

Query: 529 PYSLRFKFFVTPIGMSLEQLHAFFSQSSLEQYTYAHRFLSVSPSPTKYTHFDIYDTCASY 350
           PY L+ +FF   IG++L     FF Q  L       R+   S  P  YT ++I  +  SY
Sbjct: 406 PYLLKIQFFTMFIGVNL----TFFPQHFLGLAGMPRRY---SDYPDTYTSWNIISSLGSY 458

Query: 349 I 347
           I
Sbjct: 459 I 459


>sp|P67793|COX1_CHOOC Cytochrome c oxidase subunit 1
           OS=Choristoneura occidentalis GN=COI PE=3 SV=2
          Length = 513

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = -3

Query: 529 PYSLRFKFFVTPIGMSLEQLHAFFSQSSLEQYTYAHRFLSVSPSPTKYTHFDIYDTCASY 350
           PY L+ +FF   IG++L     FF Q  L       R+   S  P  YT ++I  +  SY
Sbjct: 406 PYLLKIQFFTMFIGVNL----TFFPQHFLGLAGMPRRY---SDYPDTYTSWNIISSLGSY 458

Query: 349 I 347
           I
Sbjct: 459 I 459


>sp|P50669|COX1_CHOFU Cytochrome c oxidase subunit 1
           OS=Choristoneura fumiferana GN=COI PE=3 SV=2
          Length = 513

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = -3

Query: 529 PYSLRFKFFVTPIGMSLEQLHAFFSQSSLEQYTYAHRFLSVSPSPTKYTHFDIYDTCASY 350
           PY L+ +FF   IG++L     FF Q  L       R+   S  P  YT ++I  +  SY
Sbjct: 406 PYLLKIQFFTMFIGVNL----TFFPQHFLGLAGMPRRY---SDYPDTYTSWNIISSLGSY 458

Query: 349 I 347
           I
Sbjct: 459 I 459


>sp|P50668|COX1_CHOBI Cytochrome c oxidase subunit 1
           OS=Choristoneura biennis GN=COI PE=3 SV=2
          Length = 513

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = -3

Query: 529 PYSLRFKFFVTPIGMSLEQLHAFFSQSSLEQYTYAHRFLSVSPSPTKYTHFDIYDTCASY 350
           PY L+ +FF   IG++L     FF Q  L       R+   S  P  YT ++I  +  SY
Sbjct: 406 PYLLKIQFFTMFIGVNL----TFFPQHFLGLAGMPRRY---SDYPDTYTSWNIISSLGSY 458

Query: 349 I 347
           I
Sbjct: 459 I 459
tr_hit_id Q4E286
Definition tr|Q4E286|Q4E286_TRYCR Putative uncharacterized protein OS=Trypanosoma cruzi
Align length 38
Score (bit) 34.3
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916887|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_C02.
         (540 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4E286|Q4E286_TRYCR Putative uncharacterized protein OS=Trypa...    34   4.3  
tr|B3L5H8|B3L5H8_PLAKH Subtilisin-like protease 2, putative OS=P...    34   5.6  
tr|A7SUX3|A7SUX3_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   7.3  
tr|B7KNN3|B7KNN3_METCH Putative uncharacterized protein OS=Methy...    33   9.5  
tr|B0X0P9|B0X0P9_CULQU Putative uncharacterized protein OS=Culex...    33   9.7  

>tr|Q4E286|Q4E286_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053510275.255 PE=4 SV=1
          Length = 225

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = -3

Query: 415 LSVSPSPTKYTHF--DIYDTCASYIDRWC---HTNHEC 317
           LS SP PTK+TH    +Y  CA    RWC   H  H C
Sbjct: 168 LSPSPHPTKHTHNVPIVYIACAPMHARWCSLLHDTHRC 205


>tr|B3L5H8|B3L5H8_PLAKH Subtilisin-like protease 2, putative
            OS=Plasmodium knowlesi (strain H) GN=PKH_093480 PE=4 SV=1
          Length = 1341

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = +2

Query: 305  VVTGTLMVGVAPPINVTSTRIIDVKMGVFGWGRTNAQKSMCICILLK*RLREKCMQLLK* 484
            V  G  MVGVAP + + S R ID   GV   G  +A K++ +CIL K  +          
Sbjct: 912  VANGLGMVGVAPDVTLISLRFID---GVKYGGSFHAIKAINVCILNKTPII--------- 959

Query: 485  HANWSNKKFES 517
            +A+W + K+++
Sbjct: 960  NASWGSNKYDA 970


>tr|A7SUX3|A7SUX3_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g133042 PE=4 SV=1
          Length = 577

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 526 YSLRFKFFVTPIGMSLEQLHAFFSQSSLEQYTYAHRFLSVS 404
           YSL   FF     +    LH+FF QSS+ QY+  H F   S
Sbjct: 408 YSLLHSFFPQSRVLQYSLLHSFFPQSSVPQYSLLHSFFPQS 448



 Score = 33.1 bits (74), Expect = 9.5
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 526 YSLRFKFFVTPIGMSLEQLHAFFSQSSLEQYTYAHRFLSVS 404
           YSL   FF     +    LH+FF QSS+ QY+  H F   S
Sbjct: 528 YSLLHSFFPQSSVLQYSLLHSFFPQSSVLQYSLLHSFFPQS 568


>tr|B7KNN3|B7KNN3_METCH Putative uncharacterized protein
           OS=Methylobacterium chloromethanicum CM4 GN=Mchl_1079
           PE=4 SV=1
          Length = 246

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 22/65 (33%), Positives = 26/65 (40%)
 Frame = -3

Query: 529 PYSLRFKFFVTPIGMSLEQLHAFFSQSSLEQYTYAHRFLSVSPSPTKYTHFDIYDTCASY 350
           P  +RF F  TP G S E LH         +   AH        PTK+ H D  D     
Sbjct: 137 PKGIRFSFPGTPNGKSREDLHGLIESVRRWRNRIAHHRAIFDKGPTKH-HADALD----- 190

Query: 349 IDRWC 335
           + RWC
Sbjct: 191 LIRWC 195


>tr|B0X0P9|B0X0P9_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ012934 PE=4 SV=1
          Length = 935

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
 Frame = -1

Query: 408 LVLPQPNTPILTSMIRVLVTLIGGATPTMS------VPVTTIDCATS 286
           + +  PN  ILT+++ ++ T++GGA  T +       PVTT+D  T+
Sbjct: 44  VTISSPNPTILTTILTLIQTVLGGAATTAAPVVTTVAPVTTVDPGTT 90