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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916890
Clone id YMU001_000093_C05
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGTTTGTTTTTTTTTCATCACAAACCCACGTTTGCTTAGCGATTATAGTCTCTGAGAAA
CAACCTGAGCTATACTGATGGCCTGTAGGGAAATCCATCTACCTCTAACCTGCATAAAGT
TGAAGAATACAATAGCAACCCAGTAATGTGAACTGGTAAAGCTGGCAAGAGTACTACGCA
TACCATCCTACCATCCCACAAAGGACATAATATACAACAACATCATCCAAAGATCTGTGC
ATTTGTCACCGTCTGTGATCAGAAAAGACCTCCAGAGCTATGGAAGAAATGCCATCAGCC
CCTCATAACTGCTTGCAAGAGTCAGCTCTGCTTTGCCTTCACCGCCCCACATGCAAGCGA
CCAATTTGTCCCTAAACTGTTGCTTTTCTTGTGTACAAATTGATTTGAATACTTCAGCTT
GGCACATTTTCGTGGAAAAAATGCATGCTGAACACGAATCATAGCAGGCACTCCTCAACA
TTTTTCTGATAAGCTCCACAAGGTACTCAATTAAGGACCATCGGCATGAAAGA
■■Homology search results ■■ -
sp_hit_id P27958
Definition sp|P27958|POLG_HCVH Genome polyprotein OS=Hepatitis C virus genotype 1a (isolate H)
Align length 59
Score (bit) 31.2
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916890|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_C05.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27958|POLG_HCVH Genome polyprotein OS=Hepatitis C virus geno...    31   3.3  
sp|Q9P273|TEN3_HUMAN Teneurin-3 OS=Homo sapiens GN=ODZ3 PE=2 SV=3      31   4.3  
sp|Q5EG65|POLG_HCVGL Genome polyprotein (Fragment) OS=Hepatitis ...    31   4.3  
sp|Q0SI54|ARGB_RHOSR Acetylglutamate kinase OS=Rhodococcus sp. (...    31   4.3  
sp|P26664|POLG_HCV1 Genome polyprotein OS=Hepatitis C virus geno...    30   7.3  
sp|P48807|FGF5_RAT Fibroblast growth factor 5 OS=Rattus norvegic...    30   7.3  
sp|A0JM51|CELF5_XENTR CUG-BP- and ETR-3-like factor 5 OS=Xenopus...    30   7.3  

>sp|P27958|POLG_HCVH Genome polyprotein OS=Hepatitis C virus
           genotype 1a (isolate H) PE=1 SV=3
          Length = 3011

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 262 LITDGDKCTDLWMMLLYIMSFVGW*DGMRSTLASFTSSHYWVA-IVFFNF-MQVRGRWI 92
           L+ D   C+ LWMMLL   +     + +    AS   +H  V+ +VFF F   ++GRW+
Sbjct: 725 LLADARVCSCLWMMLLISQAEAALENLVILNAASLAGTHGLVSFLVFFCFAWYLKGRWV 783


>sp|Q9P273|TEN3_HUMAN Teneurin-3 OS=Homo sapiens GN=ODZ3 PE=2 SV=3
          Length = 2699

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 101 TSNLHKVEEYNSNPVM*TGKAGKSTTHTILPSHKGHNIQQHHPKI 235
           T + +K +  N  P       G+ST   + PSHK H+  QHHP I
Sbjct: 160 TEHENKSDSENEQPA---SNQGQSTLQPLPPSHKQHS-AQHHPSI 200


>sp|Q5EG65|POLG_HCVGL Genome polyprotein (Fragment) OS=Hepatitis C
           virus (isolate Glasgow) PE=1 SV=3
          Length = 829

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 262 LITDGDKCTDLWMMLLYIMSFVGW*DGMRSTLASFTSSHYWVA-IVFFNFMQ-VRGRWI 92
           L+ D   C+ LWMMLL   +     + +    AS   +H  V+ +VFF F   +RG+W+
Sbjct: 725 LLADARVCSCLWMMLLISQAEAALENLVVLNAASLAGTHGLVSFLVFFCFAWFLRGKWV 783


>sp|Q0SI54|ARGB_RHOSR Acetylglutamate kinase OS=Rhodococcus sp.
           (strain RHA1) GN=argB PE=3 SV=1
          Length = 308

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 382 QQFRDKLVACMWGGEGKAELTLASSYEGLMAFL 284
           QQFRDK+V   +GG    +  L +++   MAFL
Sbjct: 28  QQFRDKVVVVKYGGNAMVDDALKTAFAADMAFL 60


>sp|P26664|POLG_HCV1 Genome polyprotein OS=Hepatitis C virus
           genotype 1a (isolate 1) PE=1 SV=3
          Length = 3011

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 262 LITDGDKCTDLWMMLLYIMSFVGW*DGMRSTLASFTSSHYWVA-IVFFNF-MQVRGRWI 92
           L+ D   C+ LWMMLL   +     + +    AS   +H  V+ +VFF F   ++G+W+
Sbjct: 725 LLADARVCSCLWMMLLISQAEAALENLVILNAASLAGTHGLVSFLVFFCFAWYLKGKWV 783


>sp|P48807|FGF5_RAT Fibroblast growth factor 5 OS=Rattus norvegicus
           GN=Fgf5 PE=2 SV=1
          Length = 266

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +2

Query: 155 GKAGKSTTHTILPSHKGHNI-----QQHHPKICAFVTVCDQKRPPELWK 286
           GKA +  +  + P H   +      Q   P++   VTV ++K+PP  WK
Sbjct: 194 GKAKRGCSPRVKPQHVSTHFLPRFKQSEQPELSFTVTVPEKKKPPRPWK 242


>sp|A0JM51|CELF5_XENTR CUG-BP- and ETR-3-like factor 5 OS=Xenopus
           tropicalis GN=brunol5 PE=2 SV=1
          Length = 486

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = +3

Query: 183 PSYHPTKDIIYNNIIQRSVHLSPSVIRKDL-------QSYGRNAISPS*LLARVSSALPS 341
           PS HP  D IY N I      SP++  + L       Q Y  +AI P+  L  V+ + P 
Sbjct: 330 PSSHPALDTIYTNSIVPYPAQSPALTVESLHPSFTGVQQY--SAIYPTAALTPVTHSTPQ 387

Query: 342 PP 347
           PP
Sbjct: 388 PP 389
tr_hit_id Q7Q1K0
Definition tr|Q7Q1K0|Q7Q1K0_ANOGA AGAP009750-PA OS=Anopheles gambiae
Align length 92
Score (bit) 35.4
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916890|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_C05.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7Q1K0|Q7Q1K0_ANOGA AGAP009750-PA OS=Anopheles gambiae GN=AGA...    35   1.8  
tr|P90649|P90649_PARPR 156D suface antigen OS=Paramecium primaur...    34   4.1  
tr|Q4J1Y0|Q4J1Y0_AZOVI Fusaric acid resistance protein conserved...    34   5.4  
tr|B3TKU8|B3TKU8_9HEPC Polyprotein OS=Hepatitis C virus subtype ...    33   7.0  
tr|A8DGF9|A8DGF9_9HEPC Genome polyprotein OS=Hepatitis C virus s...    33   9.2  
tr|A5YM28|A5YM28_9HEPC Genome polyprotein (Fragment) OS=Hepatiti...    33   9.2  

>tr|Q7Q1K0|Q7Q1K0_ANOGA AGAP009750-PA OS=Anopheles gambiae
            GN=AGAP009750 PE=4 SV=4
          Length = 956

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = +2

Query: 56   RNNLSYTDGL*GN-PSTSNLHKVEEYNSNPVM*TGKAGKSTTHTILPSHKGHNIQQHHPK 232
            R  +S++D   G+  S+ +  K+++ +S+PV    +   +TT  I+ S  GH I  HH  
Sbjct: 775  RTIVSFSDTQTGSWQSSFSSMKLQDTHSSPV----RRLDATTAGIIKSKSGHAIGHHHGH 830

Query: 233  ICAFVTVCDQKRPPEL----WKKCHQPLITAC 316
             C F        P +L    WK C  P++T C
Sbjct: 831  RCPFCDWICHGDPTQLDKHYWKAC--PVLTKC 860


>tr|P90649|P90649_PARPR 156D suface antigen OS=Paramecium
           primaurelia PE=4 SV=1
          Length = 2543

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
 Frame = -2

Query: 514 LIEYLVELIRKMLRSACYDSCSACIFSTKMCQAEVFKSICTQEKQQFRDKLVACMWGGEG 335
           L  Y    I     + CY+S SA       CQ +  KS   Q        L  C++ G G
Sbjct: 669 LFAYKSGSIDNFTTNQCYNSASAT--ENDSCQVKTCKSATNQTDSTCGSFLEGCVYNGNG 726

Query: 334 -----KAELTLASSYEGLMAF 287
                KA  T  +SY G++AF
Sbjct: 727 GCVDPKAGDTTCASYTGVLAF 747


>tr|Q4J1Y0|Q4J1Y0_AZOVI Fusaric acid resistance protein conserved
           region OS=Azotobacter vinelandii DJ GN=AvinDRAFT_6957
           PE=4 SV=1
          Length = 725

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = -2

Query: 427 MCQAEVFKSICTQEKQQFRD-KLVACMWGGEGKAELTLASSYEGLMAFLP*LWRSFLITD 251
           +C A ++  +CT    ++RD +  AC+  G     + L ++++   AF+  LWR   IT 
Sbjct: 104 LCLA-LWVGLCTAGSARYRDFRGYACVLAGYTAVMIGLPATFDPEGAFMQALWRVLEITV 162

Query: 250 GDKCTDLWMMLL 215
           G  CT L M L+
Sbjct: 163 GILCTGLVMGLV 174


>tr|B3TKU8|B3TKU8_9HEPC Polyprotein OS=Hepatitis C virus subtype 1a
           PE=4 SV=1
          Length = 3011

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = -2

Query: 343 GEGKAELTLASSYEGLMAFLP*LWRSFLITDGDKCTDLWMMLLYIMSFVGW*DGMRSTLA 164
           G G +  +LA  +E ++          L+ D   C+ LWMMLL   +     + +    A
Sbjct: 704 GVGSSITSLAIKWEYVVLLF------LLLADARVCSCLWMMLLISQAEAALENLVVLNAA 757

Query: 163 SFTSSHYWVA-IVFFNF-MQVRGRWI 92
           S T +H + + +VFF F   ++GRW+
Sbjct: 758 SLTGTHGFASFLVFFCFAWYLKGRWV 783


>tr|A8DGF9|A8DGF9_9HEPC Genome polyprotein OS=Hepatitis C virus
           subtype 1a PE=4 SV=2
          Length = 3011

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -2

Query: 262 LITDGDKCTDLWMMLLYIMSFVGW*DGMRSTLASFTSSHYWVA-IVFFNF-MQVRGRWI 92
           L+ D   C+ LWMMLL   +     + +    AS T +H +V+ +VFF F   ++G+W+
Sbjct: 725 LLADARVCSCLWMMLLISQAEAALENLVILNAASLTGTHGFVSFLVFFCFAWYLKGKWV 783


>tr|A5YM28|A5YM28_9HEPC Genome polyprotein (Fragment) OS=Hepatitis C
           virus PE=4 SV=1
          Length = 1644

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 262 LITDGDKCTDLWMMLLYIMSFVGW*DGMRSTLASFTSSHYWVA-IVFFNF-MQVRGRWIS 89
           L+ D   C+ LWMMLL   +     + +    AS   +H  V+ +VFF F   ++GRW+S
Sbjct: 725 LLADARVCSCLWMMLLISQAEAALENLVLLNAASLAGTHGLVSFLVFFCFAWYLKGRWVS 784